Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 SSTR5-AS1-204ENST00000569832 2864 ntTSL 2 BASIC12.91□□□□□ -0.34
COL28A1Q2UY09 NEU3-201ENST00000294064 6728 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL28A1Q2UY09 ZDHHC8-203ENST00000405930 3112 ntTSL 2 BASIC12.91□□□□□ -0.34
COL28A1Q2UY09 CENPBD1-201ENST00000314994 2744 ntAPPRIS P1 BASIC12.91□□□□□ -0.34
COL28A1Q2UY09 UBE2E2-202ENST00000396703 2748 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL28A1Q2UY09 IMMT-212ENST00000620815 1520 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
COL28A1Q2UY09 IL1RAPL2-202ENST00000372582 2985 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL28A1Q2UY09 BRSK1-206ENST00000590333 2977 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
COL28A1Q2UY09 MTSS1-216ENST00000524090 2166 ntTSL 2 BASIC12.91□□□□□ -0.34
COL28A1Q2UY09 AC023794.5-201ENST00000564380 2157 ntBASIC12.91□□□□□ -0.34
COL28A1Q2UY09 TNNI1-201ENST00000336092 1750 ntAPPRIS P2 TSL 5 BASIC12.91□□□□□ -0.34
COL28A1Q2UY09 EDEM2-201ENST00000374491 1756 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
COL28A1Q2UY09 PPM1M-203ENST00000409502 1790 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
COL28A1Q2UY09 ZFP28-204ENST00000591844 3475 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
COL28A1Q2UY09 SERHL2-201ENST00000327678 1374 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL28A1Q2UY09 NOP58-201ENST00000264279 2046 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL28A1Q2UY09 NSD2-203ENST00000382888 2666 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
COL28A1Q2UY09 PIP5K1B-208ENST00000541509 2664 ntTSL 2 BASIC12.91□□□□□ -0.34
COL28A1Q2UY09 AL359075.1-201ENST00000476232 2921 ntTSL 1 (best) BASIC12.91□□□□□ -0.34
COL28A1Q2UY09 C5orf56-206ENST00000612967 2791 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL28A1Q2UY09 CEP131-201ENST00000269392 3673 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL28A1Q2UY09 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL28A1Q2UY09 C19orf44-203ENST00000594035 2609 ntAPPRIS ALT2 TSL 1 (best) BASIC12.91□□□□□ -0.34
COL28A1Q2UY09 HSP90AA1-201ENST00000216281 3379 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
COL28A1Q2UY09 LYPLA1-202ENST00000343231 1308 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
COL28A1Q2UY09 MKL1-201ENST00000355630 4496 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
COL28A1Q2UY09 TGM1-202ENST00000544573 1581 ntTSL 2 BASIC12.9□□□□□ -0.34
COL28A1Q2UY09 UGP2-207ENST00000467648 2057 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
COL28A1Q2UY09 FNTB-201ENST00000246166 2834 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
COL28A1Q2UY09 IKZF1-202ENST00000343574 5925 ntTSL 5 BASIC12.9□□□□□ -0.34
COL28A1Q2UY09 RFX8-201ENST00000428343 1686 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
COL28A1Q2UY09 PRRT3-203ENST00000412055 3761 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
COL28A1Q2UY09 CAMSAP3-201ENST00000160298 3889 ntAPPRIS P3 TSL 2 BASIC12.9□□□□□ -0.34
COL28A1Q2UY09 CTBP1-AS-201ENST00000625256 3886 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
COL28A1Q2UY09 STRCP1-201ENST00000509801 5328 ntBASIC12.9□□□□□ -0.34
COL28A1Q2UY09 AFF3-201ENST00000317233 8135 ntAPPRIS ALT2 TSL 5 BASIC12.9□□□□□ -0.34
COL28A1Q2UY09 GFI1B-203ENST00000372123 1514 ntTSL 5 BASIC12.9□□□□□ -0.34
COL28A1Q2UY09 FLAD1-202ENST00000295530 1211 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
COL28A1Q2UY09 PCP2-201ENST00000311069 776 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
COL28A1Q2UY09 TAC4-203ENST00000352793 564 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
COL28A1Q2UY09 OR2W3-201ENST00000360358 945 ntAPPRIS P1 BASIC12.9□□□□□ -0.34
COL28A1Q2UY09 NR1I3-201ENST00000367979 1074 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
COL28A1Q2UY09 NR1I3-207ENST00000367985 1074 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
COL28A1Q2UY09 FUNDC1-201ENST00000378045 1196 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
COL28A1Q2UY09 CD3G-202ENST00000392883 1179 ntTSL 5 BASIC12.9□□□□□ -0.34
COL28A1Q2UY09 GAPDH-204ENST00000396859 1256 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
COL28A1Q2UY09 IGSF23-201ENST00000402988 989 ntAPPRIS P2 TSL 3 BASIC12.9□□□□□ -0.34
COL28A1Q2UY09 U3.41-201ENST00000408711 219 ntBASIC12.9□□□□□ -0.34
COL28A1Q2UY09 INMT-202ENST00000409539 803 ntAPPRIS ALT1 TSL 1 (best) BASIC12.9□□□□□ -0.34
COL28A1Q2UY09 VDAC1P11-201ENST00000458323 852 ntBASIC12.9□□□□□ -0.34
COL28A1Q2UY09 AC004889.1-201ENST00000498693 856 ntTSL 5 BASIC12.9□□□□□ -0.34
COL28A1Q2UY09 MAN2B2-202ENST00000504248 2968 ntTSL 2 BASIC12.9□□□□□ -0.34
COL28A1Q2UY09 NR1I3-225ENST00000508387 634 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
COL28A1Q2UY09 EIF2B1-205ENST00000539951 848 ntTSL 5 BASIC12.9□□□□□ -0.34
COL28A1Q2UY09 AC087741.1-205ENST00000572730 750 ntTSL 3 BASIC12.9□□□□□ -0.34
COL28A1Q2UY09 AC100786.1-201ENST00000583018 513 ntTSL 3 BASIC12.9□□□□□ -0.34
COL28A1Q2UY09 ADAM17-203ENST00000497134 1873 ntTSL 5 BASIC12.9□□□□□ -0.34
COL28A1Q2UY09 FAM213A-203ENST00000372187 1647 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
COL28A1Q2UY09 GJB4-201ENST00000339480 2840 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
COL28A1Q2UY09 RPP30-202ENST00000371703 2589 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
COL28A1Q2UY09 GSE1-202ENST00000393243 7140 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
COL28A1Q2UY09 CLP1-202ENST00000525602 1392 ntAPPRIS P1 TSL 1 (best) BASIC12.9□□□□□ -0.34
COL28A1Q2UY09 BICDL2-204ENST00000573514 3519 ntTSL 2 BASIC12.9□□□□□ -0.34
COL28A1Q2UY09 NHLH2-202ENST00000369506 7226 ntAPPRIS P1 BASIC12.9□□□□□ -0.34
COL28A1Q2UY09 ELK1-201ENST00000247161 2695 ntAPPRIS P3 TSL 1 (best) BASIC12.9□□□□□ -0.34
COL28A1Q2UY09 CRACR2A-203ENST00000440314 2697 ntAPPRIS P1 TSL 2 BASIC12.9□□□□□ -0.34
COL28A1Q2UY09 PCTP-207ENST00000576183 2680 ntTSL 3 BASIC12.9□□□□□ -0.34
COL28A1Q2UY09 OASL-202ENST00000339275 1492 ntTSL 1 (best) BASIC12.9□□□□□ -0.34
COL28A1Q2UY09 GTF2I-215ENST00000614986 4415 ntAPPRIS ALT1 TSL 1 (best) BASIC12.9□□□□□ -0.34
COL28A1Q2UY09 GTF2I-221ENST00000621734 4412 ntAPPRIS ALT2 TSL 1 (best) BASIC12.9□□□□□ -0.34
COL28A1Q2UY09 WNT5A-202ENST00000474267 6042 ntAPPRIS P1 TSL 5 BASIC12.9□□□□□ -0.35
COL28A1Q2UY09 SNCAIP-206ENST00000414317 1591 ntTSL 1 (best) BASIC12.9□□□□□ -0.35
COL28A1Q2UY09 TRIM11-204ENST00000493030 5774 ntTSL 1 (best) BASIC12.9□□□□□ -0.35
COL28A1Q2UY09 GUCY1B2-205ENST00000532104 1912 ntTSL 2 BASIC12.9□□□□□ -0.35
COL28A1Q2UY09 SCML4-203ENST00000369022 2377 ntTSL 2 BASIC12.89□□□□□ -0.35
COL28A1Q2UY09 AHCY-205ENST00000538132 2366 ntTSL 2 BASIC12.89□□□□□ -0.35
COL28A1Q2UY09 TMEM63B-202ENST00000323267 3198 ntAPPRIS P1 TSL 5 BASIC12.89□□□□□ -0.35
COL28A1Q2UY09 SF3A1-201ENST00000215793 5143 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL28A1Q2UY09 PTK7-203ENST00000345201 4071 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
COL28A1Q2UY09 HSD17B4-201ENST00000256216 2683 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL28A1Q2UY09 INO80-202ENST00000401393 5991 ntAPPRIS P1 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL28A1Q2UY09 TMBIM6-217ENST00000549385 2771 ntAPPRIS P3 TSL 5 BASIC12.89□□□□□ -0.35
COL28A1Q2UY09 FGGY-204ENST00000371218 2052 ntTSL 1 (best) BASIC12.89□□□□□ -0.35
COL28A1Q2UY09 ZWINT-202ENST00000361148 807 ntAPPRIS ALT2 TSL 2 BASIC12.89□□□□□ -0.35
COL28A1Q2UY09 RPL10-203ENST00000406022 748 ntTSL 3 BASIC12.89□□□□□ -0.35
COL28A1Q2UY09 AC091729.3-203ENST00000413706 674 ntTSL 5 BASIC12.89□□□□□ -0.35
COL28A1Q2UY09 AL359182.1-201ENST00000435915 469 ntTSL 3 BASIC12.89□□□□□ -0.35
COL28A1Q2UY09 CNBP-202ENST00000441626 1040 ntTSL 2 BASIC12.89□□□□□ -0.35
COL28A1Q2UY09 AC009517.1-201ENST00000454750 570 ntBASIC12.89□□□□□ -0.35
COL28A1Q2UY09 AL161727.1-201ENST00000457409 530 ntBASIC12.89□□□□□ -0.35
COL28A1Q2UY09 AL157871.2-201ENST00000556212 552 ntTSL 3 BASIC12.89□□□□□ -0.35
COL28A1Q2UY09 AL136298.3-201ENST00000556746 445 ntBASIC12.89□□□□□ -0.35
COL28A1Q2UY09 TCL1A-209ENST00000557043 980 ntTSL 3 BASIC12.89□□□□□ -0.35
COL28A1Q2UY09 PPY-202ENST00000587006 431 ntTSL 3 BASIC12.89□□□□□ -0.35
COL28A1Q2UY09 SMIM22-207ENST00000589721 822 ntAPPRIS ALT2 TSL 1 (best) BASIC12.89□□□□□ -0.35
COL28A1Q2UY09 AC123912.6-201ENST00000612657 315 ntBASIC12.89□□□□□ -0.35
COL28A1Q2UY09 Metazoa_SRP.173-201ENST00000614020 273 ntBASIC12.89□□□□□ -0.35
COL28A1Q2UY09 MEP1AP1-201ENST00000636082 1097 ntBASIC12.89□□□□□ -0.35
COL28A1Q2UY09 ADH1B-207ENST00000639454 1210 ntTSL 5 BASIC12.89□□□□□ -0.35
COL28A1Q2UY09 AC138627.1-201ENST00000641127 1257 ntBASIC12.89□□□□□ -0.35
Retrieved 100 of 98,524 protein–RNA pairs in 43.6 ms