Protein–RNA interactions for Protein: F8WFD2

NPIPA3, Nuclear pore complex-interacting protein family member A3, humanhuman

Predictions only

Length 350 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPIPA3F8WFD2 CYB5R2-201ENST00000299498 1254 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
NPIPA3F8WFD2 CLCC1-202ENST00000348264 1124 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
NPIPA3F8WFD2 HIST1H2BF-201ENST00000356530 1196 ntAPPRIS P1 BASIC12.23□□□□□ -0.45
NPIPA3F8WFD2 CASP8-206ENST00000392258 1060 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
NPIPA3F8WFD2 AC103702.2-203ENST00000425510 379 ntTSL 5 BASIC12.23□□□□□ -0.45
NPIPA3F8WFD2 AL355482.2-201ENST00000428646 1145 ntTSL 2 BASIC12.23□□□□□ -0.45
NPIPA3F8WFD2 AL390961.2-201ENST00000454991 472 ntTSL 3 BASIC12.23□□□□□ -0.45
NPIPA3F8WFD2 SIX3-AS1-202ENST00000456467 557 ntTSL 2 BASIC12.23□□□□□ -0.45
NPIPA3F8WFD2 TIMM17B-204ENST00000465150 964 ntTSL 2 BASIC12.23□□□□□ -0.45
NPIPA3F8WFD2 RPL29P2-202ENST00000498671 657 ntBASIC12.23□□□□□ -0.45
NPIPA3F8WFD2 AC104964.1-201ENST00000520494 489 ntTSL 2 BASIC12.23□□□□□ -0.45
NPIPA3F8WFD2 CMTM1-219ENST00000533953 934 ntAPPRIS ALT2 TSL 1 (best) BASIC12.23□□□□□ -0.45
NPIPA3F8WFD2 AL139316.1-201ENST00000555643 568 ntTSL 3 BASIC12.23□□□□□ -0.45
NPIPA3F8WFD2 LINC00511-205ENST00000578206 908 ntTSL 3 BASIC12.23□□□□□ -0.45
NPIPA3F8WFD2 SELENOW-212ENST00000601048 888 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
NPIPA3F8WFD2 AC113385.2-201ENST00000614465 762 ntBASIC12.23□□□□□ -0.45
NPIPA3F8WFD2 MECP2-213ENST00000622433 1071 ntTSL 5 BASIC12.23□□□□□ -0.45
NPIPA3F8WFD2 AC137723.2-201ENST00000623540 398 ntBASIC12.23□□□□□ -0.45
NPIPA3F8WFD2 ADH1B-207ENST00000639454 1210 ntTSL 5 BASIC12.23□□□□□ -0.45
NPIPA3F8WFD2 TNRC18P1-201ENST00000502875 3650 ntBASIC12.23□□□□□ -0.45
NPIPA3F8WFD2 AP001999.1-201ENST00000513405 3684 ntTSL 2 BASIC12.23□□□□□ -0.45
NPIPA3F8WFD2 INHBA-201ENST00000242208 6064 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
NPIPA3F8WFD2 AC020658.7-201ENST00000624274 2442 ntBASIC12.23□□□□□ -0.45
NPIPA3F8WFD2 MAGI2-218ENST00000630991 2349 ntTSL 2 BASIC12.23□□□□□ -0.45
NPIPA3F8WFD2 FAM86C1-202ENST00000359244 2110 ntAPPRIS ALT2 TSL 2 BASIC12.23□□□□□ -0.45
NPIPA3F8WFD2 FAM122C-203ENST00000414371 2119 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
NPIPA3F8WFD2 MAP7-201ENST00000354570 4152 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
NPIPA3F8WFD2 COASY-202ENST00000421097 2071 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
NPIPA3F8WFD2 PNKD-203ENST00000273077 3021 ntAPPRIS P4 TSL 1 (best) BASIC12.23□□□□□ -0.45
NPIPA3F8WFD2 DLGAP1-AS1-201ENST00000317114 1966 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
NPIPA3F8WFD2 LILRA1-201ENST00000251372 1910 ntAPPRIS P1 TSL 1 (best) BASIC12.23□□□□□ -0.45
NPIPA3F8WFD2 RECQL5-218ENST00000584999 1922 ntTSL 1 (best) BASIC12.23□□□□□ -0.45
NPIPA3F8WFD2 SEMA3F-201ENST00000002829 3802 ntAPPRIS P3 TSL 1 (best) BASIC12.23□□□□□ -0.45
NPIPA3F8WFD2 ZMIZ1-202ENST00000446377 6686 ntTSL 5 BASIC12.23□□□□□ -0.45
NPIPA3F8WFD2 PPP2R1B-204ENST00000426998 1888 ntAPPRIS ALT2 TSL 2 BASIC12.23□□□□□ -0.45
NPIPA3F8WFD2 TP73-207ENST00000378290 1831 ntTSL 2 BASIC12.23□□□□□ -0.45
NPIPA3F8WFD2 DMTN-220ENST00000523266 2735 ntTSL 5 BASIC12.23□□□□□ -0.45
NPIPA3F8WFD2 TTYH3-204ENST00000407643 4537 ntTSL 5 BASIC12.23□□□□□ -0.45
NPIPA3F8WFD2 RREB1-210ENST00000611109 3563 ntTSL 5 BASIC12.23□□□□□ -0.45
NPIPA3F8WFD2 TOX2-202ENST00000358131 2605 ntTSL 2 BASIC12.23□□□□□ -0.45
NPIPA3F8WFD2 ZNF683-205ENST00000436292 1712 ntAPPRIS ALT2 TSL 5 BASIC12.23□□□□□ -0.45
NPIPA3F8WFD2 ROBO2-209ENST00000487694 5919 ntTSL 5 BASIC12.22□□□□□ -0.45
NPIPA3F8WFD2 ZNF501-205ENST00000620116 3382 ntAPPRIS P1 TSL 4 BASIC12.22□□□□□ -0.45
NPIPA3F8WFD2 PHF10-206ENST00000621772 1651 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
NPIPA3F8WFD2 ACVR2A-201ENST00000241416 5728 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
NPIPA3F8WFD2 GDPD5-215ENST00000533805 2424 ntTSL 2 BASIC12.22□□□□□ -0.45
NPIPA3F8WFD2 MYT1-201ENST00000328439 5535 ntAPPRIS P2 TSL 1 (best) BASIC12.22□□□□□ -0.45
NPIPA3F8WFD2 SCD5-202ENST00000319540 3101 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
NPIPA3F8WFD2 PPHLN1-223ENST00000610488 1521 ntTSL 5 BASIC12.22□□□□□ -0.45
NPIPA3F8WFD2 AC079781.5-202ENST00000641784 3743 ntBASIC12.22□□□□□ -0.45
NPIPA3F8WFD2 WASHC5-202ENST00000517845 3667 ntTSL 2 BASIC12.22□□□□□ -0.45
NPIPA3F8WFD2 TMEM9B-202ENST00000525069 1433 ntTSL 2 BASIC12.22□□□□□ -0.45
NPIPA3F8WFD2 TRO-225ENST00000622017 1403 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
NPIPA3F8WFD2 USP31-203ENST00000567975 2142 ntTSL 2 BASIC12.22□□□□□ -0.45
NPIPA3F8WFD2 PCDHA4-202ENST00000512229 4163 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
NPIPA3F8WFD2 APCDD1L-AS1-203ENST00000427140 2092 ntTSL 2 BASIC12.22□□□□□ -0.45
NPIPA3F8WFD2 SPTB-203ENST00000389721 6705 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
NPIPA3F8WFD2 MRVI1-204ENST00000527509 2686 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
NPIPA3F8WFD2 UBE2D3-210ENST00000453744 3990 ntAPPRIS ALT1 TSL 1 (best) BASIC12.22□□□□□ -0.45
NPIPA3F8WFD2 AC007491.1-201ENST00000637560 1306 ntTSL 5 BASIC12.22□□□□□ -0.45
NPIPA3F8WFD2 ALOX15B-201ENST00000380173 2605 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
NPIPA3F8WFD2 PCDHA6-201ENST00000378126 3267 ntBASIC12.22□□□□□ -0.45
NPIPA3F8WFD2 SIRPB3P-201ENST00000340424 1216 ntBASIC12.22□□□□□ -0.45
NPIPA3F8WFD2 RBM4-203ENST00000398692 921 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
NPIPA3F8WFD2 ELFN1-AS1-201ENST00000415399 636 ntTSL 5 BASIC12.22□□□□□ -0.45
NPIPA3F8WFD2 AC116609.2-201ENST00000431542 256 ntTSL 5 BASIC12.22□□□□□ -0.45
NPIPA3F8WFD2 AL035413.1-201ENST00000437898 507 ntTSL 2 BASIC12.22□□□□□ -0.45
NPIPA3F8WFD2 RPL3P5-201ENST00000441645 1232 ntBASIC12.22□□□□□ -0.45
NPIPA3F8WFD2 AL512288.1-201ENST00000448015 491 ntTSL 5 BASIC12.22□□□□□ -0.45
NPIPA3F8WFD2 ALG1L7P-201ENST00000502317 768 ntBASIC12.22□□□□□ -0.45
NPIPA3F8WFD2 RBM4-207ENST00000506523 654 ntTSL 3 BASIC12.22□□□□□ -0.45
NPIPA3F8WFD2 AC025171.3-201ENST00000509036 472 ntTSL 2 BASIC12.22□□□□□ -0.45
NPIPA3F8WFD2 AC103736.1-201ENST00000524410 605 ntTSL 3 BASIC12.22□□□□□ -0.45
NPIPA3F8WFD2 SAA2-206ENST00000530400 323 ntTSL 3 BASIC12.22□□□□□ -0.45
NPIPA3F8WFD2 KNOP1P1-201ENST00000542108 989 ntBASIC12.22□□□□□ -0.45
NPIPA3F8WFD2 AC009065.6-201ENST00000568795 456 ntTSL 2 BASIC12.22□□□□□ -0.45
NPIPA3F8WFD2 AC004528.1-201ENST00000588380 641 ntTSL 5 BASIC12.22□□□□□ -0.45
NPIPA3F8WFD2 NAV1-210ENST00000593583 726 ntBASIC12.22□□□□□ -0.45
NPIPA3F8WFD2 ZNF737-204ENST00000596797 569 ntTSL 4 BASIC12.22□□□□□ -0.45
NPIPA3F8WFD2 KF455155.1-201ENST00000604493 303 ntBASIC12.22□□□□□ -0.45
NPIPA3F8WFD2 NEK4-207ENST00000535191 2452 ntTSL 2 BASIC12.22□□□□□ -0.45
NPIPA3F8WFD2 BCKDHB-201ENST00000320393 3692 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
NPIPA3F8WFD2 FIG4-201ENST00000230124 3011 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
NPIPA3F8WFD2 CCHCR1-203ENST00000396268 2958 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
NPIPA3F8WFD2 MED12L-202ENST00000309237 2862 ntAPPRIS ALT2 TSL 2 BASIC12.22□□□□□ -0.45
NPIPA3F8WFD2 SLC16A1-201ENST00000369626 3910 ntAPPRIS P1 TSL 1 (best) BASIC12.22□□□□□ -0.45
NPIPA3F8WFD2 MCRIP1-207ENST00000574190 2775 ntAPPRIS P1 TSL 2 BASIC12.22□□□□□ -0.45
NPIPA3F8WFD2 TNFRSF11A-205ENST00000616710 3809 ntAPPRIS ALT2 TSL 1 (best) BASIC12.22□□□□□ -0.45
NPIPA3F8WFD2 CASP8-212ENST00000432109 1629 ntAPPRIS P4 TSL 5 BASIC12.22□□□□□ -0.45
NPIPA3F8WFD2 SFMBT2-204ENST00000397167 8024 ntAPPRIS P1 TSL 5 BASIC12.22□□□□□ -0.45
NPIPA3F8WFD2 TMEM182-201ENST00000409173 3198 ntTSL 1 (best) BASIC12.22□□□□□ -0.45
NPIPA3F8WFD2 CARS-214ENST00000529772 2637 ntTSL 2 BASIC12.22□□□□□ -0.45
NPIPA3F8WFD2 USP40-201ENST00000251722 5692 ntAPPRIS ALT2 TSL 5 BASIC12.22□□□□□ -0.45
NPIPA3F8WFD2 L1CAM-202ENST00000361981 5004 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
NPIPA3F8WFD2 KYAT1-205ENST00000436267 2487 ntTSL 2 BASIC12.21□□□□□ -0.45
NPIPA3F8WFD2 WDR26-201ENST00000414423 6872 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
NPIPA3F8WFD2 MAP7D2-202ENST00000379651 3930 ntAPPRIS P3 TSL 1 (best) BASIC12.21□□□□□ -0.45
NPIPA3F8WFD2 DHX16-201ENST00000376437 1933 ntTSL 1 (best) BASIC12.21□□□□□ -0.45
NPIPA3F8WFD2 CLUL1-202ENST00000400606 1943 ntAPPRIS P1 TSL 1 (best) BASIC12.21□□□□□ -0.45
NPIPA3F8WFD2 IFNAR2-202ENST00000342136 2899 ntAPPRIS P4 TSL 1 (best) BASIC12.21□□□□□ -0.45
Retrieved 100 of 98,524 protein–RNA pairs in 38 ms