Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 PEX26-202ENST00000399744 1672 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CFAP54Q96N23 ZNF517-207ENST00000531720 1615 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CFAP54Q96N23 SAC3D1-201ENST00000398846 1566 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CFAP54Q96N23 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC21.98■■□□□ 1.11
CFAP54Q96N23 FLJ37453-201ENST00000317122 2473 ntTSL 2 BASIC21.98■■□□□ 1.11
CFAP54Q96N23 C1QTNF1-207ENST00000580454 1396 ntAPPRIS P1 TSL 5 BASIC21.98■■□□□ 1.11
CFAP54Q96N23 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
CFAP54Q96N23 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC21.98■■□□□ 1.11
CFAP54Q96N23 ZNF292-204ENST00000392985 1096 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
CFAP54Q96N23 PPP1R3F-205ENST00000495799 1537 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
CFAP54Q96N23 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC21.97■■□□□ 1.11
CFAP54Q96N23 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC21.97■■□□□ 1.11
CFAP54Q96N23 AC005181.1-201ENST00000604782 1256 ntBASIC21.97■■□□□ 1.11
CFAP54Q96N23 SHF-208ENST00000560734 1731 ntTSL 3 BASIC21.96■■□□□ 1.11
CFAP54Q96N23 HSDL1-202ENST00000434463 1493 ntTSL 2 BASIC21.96■■□□□ 1.11
CFAP54Q96N23 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
CFAP54Q96N23 SCARA5-203ENST00000518030 1074 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
CFAP54Q96N23 MMAB-206ENST00000540016 945 ntTSL 3 BASIC21.96■■□□□ 1.11
CFAP54Q96N23 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC21.96■■□□□ 1.11
CFAP54Q96N23 FAM32A-205ENST00000589852 1168 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
CFAP54Q96N23 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC21.96■■□□□ 1.11
CFAP54Q96N23 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC21.96■■□□□ 1.11
CFAP54Q96N23 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CFAP54Q96N23 AC027682.4-201ENST00000605277 798 ntTSL 5 BASIC21.96■■□□□ 1.11
CFAP54Q96N23 SNX24-201ENST00000261369 2158 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
CFAP54Q96N23 TSPAN4-202ENST00000397396 1332 ntTSL 5 BASIC21.96■■□□□ 1.11
CFAP54Q96N23 AL121749.1-202ENST00000609313 2153 ntBASIC21.96■■□□□ 1.11
CFAP54Q96N23 RFWD2-201ENST00000308769 2124 ntTSL 1 (best) BASIC21.95■■□□□ 1.11
CFAP54Q96N23 LGALS9B-201ENST00000324290 1243 ntAPPRIS P2 TSL 5 BASIC21.95■■□□□ 1.11
CFAP54Q96N23 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.11
CFAP54Q96N23 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC21.95■■□□□ 1.11
CFAP54Q96N23 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC21.95■■□□□ 1.11
CFAP54Q96N23 CD151-213ENST00000528011 1369 ntAPPRIS ALT1 TSL 5 BASIC21.95■■□□□ 1.1
CFAP54Q96N23 GNB2-203ENST00000393926 1641 ntAPPRIS P1 TSL 5 BASIC21.95■■□□□ 1.1
CFAP54Q96N23 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
CFAP54Q96N23 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
CFAP54Q96N23 USP36-216ENST00000589424 970 ntTSL 5 BASIC21.95■■□□□ 1.1
CFAP54Q96N23 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC21.95■■□□□ 1.1
CFAP54Q96N23 VIL1-204ENST00000440053 1454 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
CFAP54Q96N23 ATP6V0A2-209ENST00000613625 1620 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
CFAP54Q96N23 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC21.95■■□□□ 1.1
CFAP54Q96N23 UNC93B4-201ENST00000505679 747 ntBASIC21.95■■□□□ 1.1
CFAP54Q96N23 PTRH1-205ENST00000423807 1570 ntTSL 2 BASIC21.95■■□□□ 1.1
CFAP54Q96N23 KLC1-225ENST00000557575 2188 ntTSL 5 BASIC21.94■■□□□ 1.1
CFAP54Q96N23 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC21.94■■□□□ 1.1
CFAP54Q96N23 AC135731.1-201ENST00000569415 2548 ntBASIC21.94■■□□□ 1.1
CFAP54Q96N23 IGFBP3-201ENST00000275521 2262 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
CFAP54Q96N23 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC21.94■■□□□ 1.1
CFAP54Q96N23 CYB5R3-201ENST00000352397 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CFAP54Q96N23 EIF5A-205ENST00000419711 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
CFAP54Q96N23 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC21.94■■□□□ 1.1
CFAP54Q96N23 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC21.94■■□□□ 1.1
CFAP54Q96N23 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC21.94■■□□□ 1.1
CFAP54Q96N23 AL445228.2-201ENST00000605589 952 ntBASIC21.94■■□□□ 1.1
CFAP54Q96N23 SEC61A2-206ENST00000379051 707 ntTSL 3 BASIC21.93■■□□□ 1.1
CFAP54Q96N23 RNA5SP413-201ENST00000516373 109 ntBASIC21.93■■□□□ 1.1
CFAP54Q96N23 FAM110A-206ENST00000541082 1614 ntAPPRIS P1 TSL 3 BASIC21.93■■□□□ 1.1
CFAP54Q96N23 IRF3-227ENST00000600911 1637 ntTSL 5 BASIC21.93■■□□□ 1.1
CFAP54Q96N23 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CFAP54Q96N23 FAM124A-201ENST00000280057 2104 ntTSL 2 BASIC21.93■■□□□ 1.1
CFAP54Q96N23 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC21.93■■□□□ 1.1
CFAP54Q96N23 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC21.93■■□□□ 1.1
CFAP54Q96N23 AC008550.1-201ENST00000511500 884 ntBASIC21.93■■□□□ 1.1
CFAP54Q96N23 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC21.93■■□□□ 1.1
CFAP54Q96N23 MAGIX-202ENST00000595224 1238 ntAPPRIS P2 TSL 5 BASIC21.93■■□□□ 1.1
CFAP54Q96N23 AC133041.1-202ENST00000642053 222 ntBASIC21.93■■□□□ 1.1
CFAP54Q96N23 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
CFAP54Q96N23 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC21.93■■□□□ 1.1
CFAP54Q96N23 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC21.93■■□□□ 1.1
CFAP54Q96N23 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CFAP54Q96N23 RPS6-203ENST00000380384 1355 ntTSL 1 (best) BASIC21.92■■□□□ 1.1
CFAP54Q96N23 ZDHHC16-204ENST00000370842 1877 ntAPPRIS ALT1 TSL 5 BASIC21.92■■□□□ 1.1
CFAP54Q96N23 DUX4L16-201ENST00000555130 1264 ntBASIC21.92■■□□□ 1.1
CFAP54Q96N23 CCDC106-205ENST00000588740 1404 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CFAP54Q96N23 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC21.92■■□□□ 1.1
CFAP54Q96N23 NELFB-201ENST00000343053 2698 ntAPPRIS ALT2 TSL 1 (best) BASIC21.92■■□□□ 1.1
CFAP54Q96N23 TSPOAP1-AS1-205ENST00000580022 2337 ntTSL 2 BASIC21.91■■□□□ 1.1
CFAP54Q96N23 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CFAP54Q96N23 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC21.91■■□□□ 1.1
CFAP54Q96N23 TRIQK-221ENST00000524107 737 ntAPPRIS P1 TSL 3 BASIC21.91■■□□□ 1.1
CFAP54Q96N23 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC21.91■■□□□ 1.1
CFAP54Q96N23 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CFAP54Q96N23 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC21.91■■□□□ 1.1
CFAP54Q96N23 CEND1-201ENST00000330106 1649 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CFAP54Q96N23 CCDC106-202ENST00000586790 2162 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CFAP54Q96N23 PRMT2-204ENST00000397628 954 ntTSL 2 BASIC21.91■■□□□ 1.1
CFAP54Q96N23 FAM131A-208ENST00000453072 1038 ntTSL 2 BASIC21.91■■□□□ 1.1
CFAP54Q96N23 AC073912.3-201ENST00000624414 853 ntBASIC21.91■■□□□ 1.1
CFAP54Q96N23 GSTM3-202ENST00000361066 1565 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CFAP54Q96N23 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC21.91■■□□□ 1.1
CFAP54Q96N23 IHH-201ENST00000295731 2023 ntAPPRIS P1 TSL 1 (best) BASIC21.91■■□□□ 1.1
CFAP54Q96N23 RASEF-201ENST00000340717 1765 ntTSL 2 BASIC21.91■■□□□ 1.1
CFAP54Q96N23 AC133637.1-201ENST00000624115 1537 ntBASIC21.91■■□□□ 1.1
CFAP54Q96N23 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
CFAP54Q96N23 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC21.91■■□□□ 1.1
CFAP54Q96N23 AF201337.1-201ENST00000520239 748 ntBASIC21.91■■□□□ 1.1
CFAP54Q96N23 HSD17B14-204ENST00000599157 991 ntTSL 3 BASIC21.91■■□□□ 1.1
CFAP54Q96N23 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC21.9■■□□□ 1.1
CFAP54Q96N23 BAALC-201ENST00000297574 801 ntTSL 3 BASIC21.9■■□□□ 1.1
CFAP54Q96N23 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC21.9■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 16.2 ms