Protein–RNA interactions for Protein: Q96CF2

CHMP4C, Charged multivesicular body protein 4c, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4CQ96CF2 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC26.3■■□□□ 1.8
CHMP4CQ96CF2 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CHMP4CQ96CF2 LYPD2-201ENST00000359228 594 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CHMP4CQ96CF2 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CHMP4CQ96CF2 PTMA-205ENST00000410064 814 ntTSL 2 BASIC26.29■■□□□ 1.8
CHMP4CQ96CF2 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC26.29■■□□□ 1.8
CHMP4CQ96CF2 GRAMD4P4-201ENST00000613563 1115 ntBASIC26.29■■□□□ 1.8
CHMP4CQ96CF2 REPS2-202ENST00000357277 7953 ntAPPRIS P3 TSL 1 (best) BASIC26.29■■□□□ 1.8
CHMP4CQ96CF2 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC26.29■■□□□ 1.8
CHMP4CQ96CF2 ABHD6-205ENST00000478253 2482 ntAPPRIS P1 TSL 2 BASIC26.29■■□□□ 1.8
CHMP4CQ96CF2 ME2-208ENST00000638937 2471 ntTSL 5 BASIC26.29■■□□□ 1.8
CHMP4CQ96CF2 SESN3-202ENST00000416495 1408 ntTSL 1 (best) BASIC26.29■■□□□ 1.8
CHMP4CQ96CF2 ANKRD28-201ENST00000399451 6564 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CHMP4CQ96CF2 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC26.29■■□□□ 1.8
CHMP4CQ96CF2 LRRC73-201ENST00000372441 2121 ntAPPRIS P1 TSL 1 (best) BASIC26.29■■□□□ 1.8
CHMP4CQ96CF2 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC26.29■■□□□ 1.8
CHMP4CQ96CF2 DLEU2-208ENST00000621282 3068 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
CHMP4CQ96CF2 PHC2-202ENST00000373418 2550 ntAPPRIS ALT2 TSL 1 (best) BASIC26.28■■□□□ 1.8
CHMP4CQ96CF2 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC26.28■■□□□ 1.8
CHMP4CQ96CF2 PSPH-201ENST00000275605 2131 ntAPPRIS P1 TSL 1 (best) BASIC26.28■■□□□ 1.8
CHMP4CQ96CF2 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC26.28■■□□□ 1.8
CHMP4CQ96CF2 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC26.28■■□□□ 1.8
CHMP4CQ96CF2 HAS1-201ENST00000222115 2087 ntAPPRIS P3 TSL 1 (best) BASIC26.27■■□□□ 1.8
CHMP4CQ96CF2 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC26.27■■□□□ 1.8
CHMP4CQ96CF2 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC26.27■■□□□ 1.8
CHMP4CQ96CF2 SLC39A4-202ENST00000301305 2174 ntAPPRIS P1 TSL 1 (best) BASIC26.27■■□□□ 1.8
CHMP4CQ96CF2 CCDC154-201ENST00000389176 2212 ntAPPRIS P5 TSL 5 BASIC26.27■■□□□ 1.8
CHMP4CQ96CF2 LINGO3-201ENST00000585527 2241 ntAPPRIS P1 BASIC26.27■■□□□ 1.8
CHMP4CQ96CF2 PTPRJ-201ENST00000418331 5122 ntAPPRIS P2 TSL 1 (best) BASIC26.27■■□□□ 1.8
CHMP4CQ96CF2 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC26.27■■□□□ 1.8
CHMP4CQ96CF2 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC26.27■■□□□ 1.8
CHMP4CQ96CF2 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC26.27■■□□□ 1.8
CHMP4CQ96CF2 VGF-203ENST00000611537 1622 ntTSL 5 BASIC26.27■■□□□ 1.8
CHMP4CQ96CF2 AKT2-210ENST00000424901 5170 ntTSL 5 BASIC26.27■■□□□ 1.8
CHMP4CQ96CF2 AC079630.1-202ENST00000618127 1840 ntBASIC26.27■■□□□ 1.8
CHMP4CQ96CF2 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC26.27■■□□□ 1.8
CHMP4CQ96CF2 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC26.27■■□□□ 1.8
CHMP4CQ96CF2 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
CHMP4CQ96CF2 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC26.26■■□□□ 1.79
CHMP4CQ96CF2 BX088645.1-201ENST00000636699 1728 ntAPPRIS P1 TSL 5 BASIC26.26■■□□□ 1.79
CHMP4CQ96CF2 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC26.26■■□□□ 1.79
CHMP4CQ96CF2 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC26.26■■□□□ 1.79
CHMP4CQ96CF2 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
CHMP4CQ96CF2 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC26.26■■□□□ 1.79
CHMP4CQ96CF2 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC26.26■■□□□ 1.79
CHMP4CQ96CF2 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
CHMP4CQ96CF2 GDI1-204ENST00000447750 2474 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
CHMP4CQ96CF2 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
CHMP4CQ96CF2 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC26.25■■□□□ 1.79
CHMP4CQ96CF2 PTGES2-202ENST00000338961 2331 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
CHMP4CQ96CF2 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
CHMP4CQ96CF2 ZNRF2P3-201ENST00000424200 374 ntBASIC26.25■■□□□ 1.79
CHMP4CQ96CF2 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
CHMP4CQ96CF2 STOX2-205ENST00000513034 807 ntTSL 3 BASIC26.25■■□□□ 1.79
CHMP4CQ96CF2 AF213884.3-201ENST00000563833 479 ntBASIC26.25■■□□□ 1.79
CHMP4CQ96CF2 MIR3181-201ENST00000578512 73 ntBASIC26.25■■□□□ 1.79
CHMP4CQ96CF2 MAG-206ENST00000597035 542 ntTSL 4 BASIC26.25■■□□□ 1.79
CHMP4CQ96CF2 pRNA.6-201ENST00000610482 90 ntBASIC26.25■■□□□ 1.79
CHMP4CQ96CF2 pRNA.5-201ENST00000612139 90 ntBASIC26.25■■□□□ 1.79
CHMP4CQ96CF2 pRNA.11-201ENST00000618423 90 ntBASIC26.25■■□□□ 1.79
CHMP4CQ96CF2 pRNA.13-201ENST00000619112 90 ntBASIC26.25■■□□□ 1.79
CHMP4CQ96CF2 BTBD7-205ENST00000554565 2697 ntTSL 1 (best) BASIC26.25■■□□□ 1.79
CHMP4CQ96CF2 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC26.25■■□□□ 1.79
CHMP4CQ96CF2 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC26.24■■□□□ 1.79
CHMP4CQ96CF2 AC133561.1-201ENST00000568600 2415 ntBASIC26.24■■□□□ 1.79
CHMP4CQ96CF2 C3orf58-207ENST00000495414 1876 ntTSL 2 BASIC26.24■■□□□ 1.79
CHMP4CQ96CF2 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC26.24■■□□□ 1.79
CHMP4CQ96CF2 SUDS3P1-201ENST00000505831 966 ntBASIC26.24■■□□□ 1.79
CHMP4CQ96CF2 RASGEF1B-208ENST00000510780 539 ntTSL 3 BASIC26.24■■□□□ 1.79
CHMP4CQ96CF2 RASGEF1B-209ENST00000512343 498 ntTSL 3 BASIC26.24■■□□□ 1.79
CHMP4CQ96CF2 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC26.24■■□□□ 1.79
CHMP4CQ96CF2 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC26.24■■□□□ 1.79
CHMP4CQ96CF2 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC26.24■■□□□ 1.79
CHMP4CQ96CF2 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC26.24■■□□□ 1.79
CHMP4CQ96CF2 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
CHMP4CQ96CF2 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC26.23■■□□□ 1.79
CHMP4CQ96CF2 AC098864.1-205ENST00000315302 2260 ntTSL 2 BASIC26.23■■□□□ 1.79
CHMP4CQ96CF2 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC26.23■■□□□ 1.79
CHMP4CQ96CF2 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC26.23■■□□□ 1.79
CHMP4CQ96CF2 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC26.23■■□□□ 1.79
CHMP4CQ96CF2 HYI-206ENST00000372434 1025 ntTSL 5 BASIC26.23■■□□□ 1.79
CHMP4CQ96CF2 DUX4L19-201ENST00000557448 1267 ntBASIC26.23■■□□□ 1.79
CHMP4CQ96CF2 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC26.23■■□□□ 1.79
CHMP4CQ96CF2 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC26.23■■□□□ 1.79
CHMP4CQ96CF2 GCA-201ENST00000233612 1694 ntTSL 2 BASIC26.22■■□□□ 1.79
CHMP4CQ96CF2 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC26.22■■□□□ 1.79
CHMP4CQ96CF2 AC133561.4-201ENST00000566112 224 ntBASIC26.22■■□□□ 1.79
CHMP4CQ96CF2 AC008764.7-201ENST00000593779 1081 ntBASIC26.22■■□□□ 1.79
CHMP4CQ96CF2 KCTD8-201ENST00000360029 2587 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
CHMP4CQ96CF2 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC26.22■■□□□ 1.79
CHMP4CQ96CF2 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC26.22■■□□□ 1.79
CHMP4CQ96CF2 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC26.22■■□□□ 1.79
CHMP4CQ96CF2 AC144652.1-201ENST00000609974 1624 ntBASIC26.21■■□□□ 1.79
CHMP4CQ96CF2 FP325331.1-202ENST00000623531 1380 ntBASIC26.21■■□□□ 1.79
CHMP4CQ96CF2 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
CHMP4CQ96CF2 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC26.21■■□□□ 1.79
CHMP4CQ96CF2 HES6-206ENST00000409574 738 ntTSL 2 BASIC26.21■■□□□ 1.79
CHMP4CQ96CF2 AL355001.2-201ENST00000620617 1191 ntBASIC26.21■■□□□ 1.79
CHMP4CQ96CF2 ADAM22-209ENST00000439864 2576 ntTSL 1 (best) BASIC26.21■■□□□ 1.79
CHMP4CQ96CF2 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC26.21■■□□□ 1.79
Retrieved 100 of 98,524 protein–RNA pairs in 16.3 ms