Protein–RNA interactions for Protein: Q4G0X9

CCDC40, Coiled-coil domain-containing protein 40, humanhuman

Predictions only

Length 1,142 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40Q4G0X9 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
CCDC40Q4G0X9 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
CCDC40Q4G0X9 SPAG16-201ENST00000272898 1059 ntTSL 5 BASIC24.29■■□□□ 1.48
CCDC40Q4G0X9 IGFBP3-202ENST00000381083 1050 ntAPPRIS ALT1 TSL 5 BASIC24.29■■□□□ 1.48
CCDC40Q4G0X9 SDHAP1-204ENST00000427415 559 ntTSL 4 BASIC24.29■■□□□ 1.48
CCDC40Q4G0X9 C14orf80-211ENST00000450383 1107 ntAPPRIS ALT2 TSL 5 BASIC24.29■■□□□ 1.48
CCDC40Q4G0X9 MIR6724-1-201ENST00000616420 92 ntBASIC24.29■■□□□ 1.48
CCDC40Q4G0X9 MIR6724-2-201ENST00000616483 92 ntBASIC24.29■■□□□ 1.48
CCDC40Q4G0X9 MIR6724-4-201ENST00000617390 92 ntBASIC24.29■■□□□ 1.48
CCDC40Q4G0X9 MIR6724-3-201ENST00000622482 92 ntBASIC24.29■■□□□ 1.48
CCDC40Q4G0X9 PFKFB4-202ENST00000383734 1491 ntTSL 1 (best) BASIC24.29■■□□□ 1.48
CCDC40Q4G0X9 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC24.29■■□□□ 1.48
CCDC40Q4G0X9 DGKQ-201ENST00000273814 4636 ntAPPRIS P2 TSL 1 (best) BASIC24.29■■□□□ 1.48
CCDC40Q4G0X9 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
CCDC40Q4G0X9 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC24.29■■□□□ 1.48
CCDC40Q4G0X9 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
CCDC40Q4G0X9 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
CCDC40Q4G0X9 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC24.29■■□□□ 1.48
CCDC40Q4G0X9 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC24.29■■□□□ 1.48
CCDC40Q4G0X9 ESRRAP2-201ENST00000418437 1549 ntBASIC24.29■■□□□ 1.48
CCDC40Q4G0X9 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
CCDC40Q4G0X9 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC24.29■■□□□ 1.48
CCDC40Q4G0X9 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC24.29■■□□□ 1.48
CCDC40Q4G0X9 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC24.29■■□□□ 1.48
CCDC40Q4G0X9 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC24.29■■□□□ 1.48
CCDC40Q4G0X9 PHACTR2-208ENST00000440869 2569 ntAPPRIS ALT2 TSL 2 BASIC24.28■■□□□ 1.48
CCDC40Q4G0X9 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC24.28■■□□□ 1.48
CCDC40Q4G0X9 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC24.28■■□□□ 1.48
CCDC40Q4G0X9 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
CCDC40Q4G0X9 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC24.27■■□□□ 1.48
CCDC40Q4G0X9 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC24.27■■□□□ 1.48
CCDC40Q4G0X9 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
CCDC40Q4G0X9 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC24.27■■□□□ 1.48
CCDC40Q4G0X9 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC24.27■■□□□ 1.48
CCDC40Q4G0X9 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC24.27■■□□□ 1.48
CCDC40Q4G0X9 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC24.27■■□□□ 1.48
CCDC40Q4G0X9 KRT16P3-201ENST00000439127 1283 ntBASIC24.27■■□□□ 1.48
CCDC40Q4G0X9 CHTF8-205ENST00000519520 856 ntTSL 2 BASIC24.27■■□□□ 1.48
CCDC40Q4G0X9 DUX4L4-201ENST00000566884 1269 ntBASIC24.27■■□□□ 1.48
CCDC40Q4G0X9 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC24.27■■□□□ 1.48
CCDC40Q4G0X9 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC24.27■■□□□ 1.48
CCDC40Q4G0X9 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC24.27■■□□□ 1.48
CCDC40Q4G0X9 CACNA1H-202ENST00000358590 8069 ntAPPRIS ALT2 TSL 5 BASIC24.26■■□□□ 1.47
CCDC40Q4G0X9 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
CCDC40Q4G0X9 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC24.26■■□□□ 1.47
CCDC40Q4G0X9 CRYAA-201ENST00000291554 1139 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
CCDC40Q4G0X9 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC24.26■■□□□ 1.47
CCDC40Q4G0X9 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC24.26■■□□□ 1.47
CCDC40Q4G0X9 AC136475.3-202ENST00000534742 812 ntTSL 2 BASIC24.26■■□□□ 1.47
CCDC40Q4G0X9 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
CCDC40Q4G0X9 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC24.26■■□□□ 1.47
CCDC40Q4G0X9 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC24.26■■□□□ 1.47
CCDC40Q4G0X9 EEF1D-203ENST00000419152 1452 ntAPPRIS ALT2 TSL 5 BASIC24.26■■□□□ 1.47
CCDC40Q4G0X9 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
CCDC40Q4G0X9 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC24.25■■□□□ 1.47
CCDC40Q4G0X9 CAMK2N2-201ENST00000296238 1362 ntAPPRIS P1 TSL 1 (best) BASIC24.25■■□□□ 1.47
CCDC40Q4G0X9 PKIB-204ENST00000368448 1561 ntAPPRIS P1 TSL 5 BASIC24.25■■□□□ 1.47
CCDC40Q4G0X9 EP400NL-214ENST00000641289 2402 ntBASIC24.24■■□□□ 1.47
CCDC40Q4G0X9 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
CCDC40Q4G0X9 TSPAN17-204ENST00000503045 1019 ntTSL 5 BASIC24.24■■□□□ 1.47
CCDC40Q4G0X9 AC009086.3-201ENST00000623486 1008 ntBASIC24.24■■□□□ 1.47
CCDC40Q4G0X9 NRXN2-204ENST00000377559 6413 ntAPPRIS ALT2 TSL 1 (best) BASIC24.24■■□□□ 1.47
CCDC40Q4G0X9 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
CCDC40Q4G0X9 C17orf82-201ENST00000623772 1530 ntBASIC24.24■■□□□ 1.47
CCDC40Q4G0X9 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
CCDC40Q4G0X9 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC24.24■■□□□ 1.47
CCDC40Q4G0X9 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
CCDC40Q4G0X9 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC24.24■■□□□ 1.47
CCDC40Q4G0X9 RNF40-201ENST00000324685 5634 ntAPPRIS P1 TSL 1 (best) BASIC24.24■■□□□ 1.47
CCDC40Q4G0X9 TATDN2-201ENST00000287652 5342 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
CCDC40Q4G0X9 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
CCDC40Q4G0X9 ZEB1-AS1-205ENST00000605946 382 ntTSL 5 BASIC24.23■■□□□ 1.47
CCDC40Q4G0X9 SLC16A10-206ENST00000612036 1231 ntTSL 5 BASIC24.23■■□□□ 1.47
CCDC40Q4G0X9 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC24.23■■□□□ 1.47
CCDC40Q4G0X9 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
CCDC40Q4G0X9 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
CCDC40Q4G0X9 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
CCDC40Q4G0X9 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC24.23■■□□□ 1.47
CCDC40Q4G0X9 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC24.23■■□□□ 1.47
CCDC40Q4G0X9 HAUS3-202ENST00000443786 2430 ntAPPRIS P1 TSL 1 (best) BASIC24.23■■□□□ 1.47
CCDC40Q4G0X9 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC24.23■■□□□ 1.47
CCDC40Q4G0X9 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
CCDC40Q4G0X9 ZBTB46-202ENST00000302995 2335 ntAPPRIS P1 TSL 2 BASIC24.22■■□□□ 1.47
CCDC40Q4G0X9 TMEM235-205ENST00000586400 2272 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
CCDC40Q4G0X9 PNMA6A-201ENST00000421798 2209 ntAPPRIS P1 TSL 2 BASIC24.22■■□□□ 1.47
CCDC40Q4G0X9 DDN-AS1-202ENST00000547866 2114 ntTSL 3 BASIC24.22■■□□□ 1.47
CCDC40Q4G0X9 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC24.22■■□□□ 1.47
CCDC40Q4G0X9 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC24.22■■□□□ 1.47
CCDC40Q4G0X9 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
CCDC40Q4G0X9 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
CCDC40Q4G0X9 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
CCDC40Q4G0X9 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC24.22■■□□□ 1.47
CCDC40Q4G0X9 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC24.22■■□□□ 1.47
CCDC40Q4G0X9 AK3-203ENST00000447596 705 ntTSL 2 BASIC24.22■■□□□ 1.47
CCDC40Q4G0X9 TIE1-210ENST00000538015 1140 ntTSL 1 (best) BASIC24.22■■□□□ 1.47
CCDC40Q4G0X9 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC24.22■■□□□ 1.47
CCDC40Q4G0X9 PPP1R12C-201ENST00000263433 2924 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
CCDC40Q4G0X9 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC24.22■■□□□ 1.47
CCDC40Q4G0X9 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC24.22■■□□□ 1.47
CCDC40Q4G0X9 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC24.21■■□□□ 1.47
Retrieved 100 of 98,524 protein–RNA pairs in 36.3 ms