Protein–RNA interactions for Protein: P67809

YBX1, Nuclease-sensitive element-binding protein 1, humanhuman

Known RBP Predictions only

Length 324 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX1P67809 RAPGEF1-203ENST00000372195 6256 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
YBX1P67809 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC21.64■■□□□ 1.05
YBX1P67809 BAD-203ENST00000394532 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.64■■□□□ 1.05
YBX1P67809 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC21.64■■□□□ 1.05
YBX1P67809 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
YBX1P67809 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC21.64■■□□□ 1.05
YBX1P67809 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC21.64■■□□□ 1.05
YBX1P67809 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC21.64■■□□□ 1.05
YBX1P67809 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
YBX1P67809 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
YBX1P67809 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
YBX1P67809 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC21.63■■□□□ 1.05
YBX1P67809 PRELID1-203ENST00000503216 1171 ntTSL 1 (best) BASIC21.63■■□□□ 1.05
YBX1P67809 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC21.63■■□□□ 1.05
YBX1P67809 GATM-206ENST00000558336 1522 ntTSL 2 BASIC21.63■■□□□ 1.05
YBX1P67809 FBXO45-201ENST00000311630 5899 ntAPPRIS P1 TSL 1 (best) BASIC21.63■■□□□ 1.05
YBX1P67809 PABPC1L-202ENST00000217074 1263 ntTSL 5 BASIC21.62■■□□□ 1.05
YBX1P67809 PEMT-206ENST00000435340 960 ntTSL 5 BASIC21.62■■□□□ 1.05
YBX1P67809 CCDC189-211ENST00000545825 1046 ntTSL 1 (best) BASIC21.62■■□□□ 1.05
YBX1P67809 GRAMD1B-217ENST00000640939 1212 ntTSL 5 BASIC21.62■■□□□ 1.05
YBX1P67809 SRSF11-203ENST00000370951 2385 ntAPPRIS ALT2 TSL 1 (best) BASIC21.62■■□□□ 1.05
YBX1P67809 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC21.62■■□□□ 1.05
YBX1P67809 NKIRAS2-206ENST00000393885 1909 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
YBX1P67809 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC21.61■■□□□ 1.05
YBX1P67809 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
YBX1P67809 HM13-AS1-201ENST00000412178 489 ntTSL 3 BASIC21.61■■□□□ 1.05
YBX1P67809 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
YBX1P67809 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
YBX1P67809 GPR161-203ENST00000367836 1983 ntTSL 2 BASIC21.61■■□□□ 1.05
YBX1P67809 TMEM200B-202ENST00000521452 2501 ntAPPRIS P1 TSL 1 (best) BASIC21.61■■□□□ 1.05
YBX1P67809 P2RX4-211ENST00000543171 1777 ntTSL 5 BASIC21.61■■□□□ 1.05
YBX1P67809 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC21.61■■□□□ 1.05
YBX1P67809 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC21.61■■□□□ 1.05
YBX1P67809 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC21.61■■□□□ 1.05
YBX1P67809 RNF4-207ENST00000506706 2098 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
YBX1P67809 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
YBX1P67809 C16orf95-201ENST00000253461 953 ntAPPRIS P3 TSL 1 (best) BASIC21.6■■□□□ 1.05
YBX1P67809 KDELR3-202ENST00000409006 931 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
YBX1P67809 AC099791.2-201ENST00000605725 427 ntBASIC21.6■■□□□ 1.05
YBX1P67809 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC21.6■■□□□ 1.05
YBX1P67809 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
YBX1P67809 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
YBX1P67809 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
YBX1P67809 CHADL-201ENST00000216241 2533 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
YBX1P67809 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.6■■□□□ 1.05
YBX1P67809 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC21.6■■□□□ 1.05
YBX1P67809 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC21.59■■□□□ 1.05
YBX1P67809 TMEM200B-201ENST00000420504 2553 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
YBX1P67809 AC144652.1-201ENST00000609974 1624 ntBASIC21.59■■□□□ 1.05
YBX1P67809 VGF-203ENST00000611537 1622 ntTSL 5 BASIC21.59■■□□□ 1.05
YBX1P67809 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC21.59■■□□□ 1.05
YBX1P67809 COMT-203ENST00000403184 2217 ntTSL 2 BASIC21.59■■□□□ 1.05
YBX1P67809 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.59■■□□□ 1.05
YBX1P67809 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC21.59■■□□□ 1.05
YBX1P67809 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
YBX1P67809 AC006455.2-201ENST00000429931 906 ntBASIC21.59■■□□□ 1.05
YBX1P67809 MEIS1-AS3-201ENST00000454167 707 ntTSL 4 BASIC21.59■■□□□ 1.05
YBX1P67809 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
YBX1P67809 IQSEC3-201ENST00000382841 2701 ntAPPRIS P3 TSL 2 BASIC21.59■■□□□ 1.05
YBX1P67809 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC21.59■■□□□ 1.05
YBX1P67809 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC21.59■■□□□ 1.05
YBX1P67809 AL353803.4-201ENST00000565882 1934 ntBASIC21.59■■□□□ 1.05
YBX1P67809 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC21.59■■□□□ 1.05
YBX1P67809 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC21.58■■□□□ 1.05
YBX1P67809 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
YBX1P67809 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC21.58■■□□□ 1.05
YBX1P67809 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
YBX1P67809 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.58■■□□□ 1.05
YBX1P67809 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC21.58■■□□□ 1.05
YBX1P67809 SMARCA5-AS1-201ENST00000500800 945 ntTSL 1 (best) BASIC21.58■■□□□ 1.05
YBX1P67809 ARHGDIA-217ENST00000584461 886 ntTSL 2 BASIC21.58■■□□□ 1.05
YBX1P67809 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC21.58■■□□□ 1.04
YBX1P67809 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC21.58■■□□□ 1.04
YBX1P67809 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC21.58■■□□□ 1.04
YBX1P67809 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC21.57■■□□□ 1.04
YBX1P67809 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC21.57■■□□□ 1.04
YBX1P67809 B3GALT4-204ENST00000451237 1694 ntAPPRIS P1 BASIC21.57■■□□□ 1.04
YBX1P67809 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
YBX1P67809 USP36-218ENST00000590546 1771 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
YBX1P67809 SRD5A1P1-201ENST00000442297 786 ntBASIC21.57■■□□□ 1.04
YBX1P67809 AL357078.1-201ENST00000448344 310 ntTSL 4 BASIC21.57■■□□□ 1.04
YBX1P67809 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
YBX1P67809 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
YBX1P67809 LSR-203ENST00000360798 1963 ntTSL 2 BASIC21.57■■□□□ 1.04
YBX1P67809 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
YBX1P67809 UBTF-213ENST00000533177 3011 ntTSL 5 BASIC21.57■■□□□ 1.04
YBX1P67809 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
YBX1P67809 TMEM64-201ENST00000418210 4663 ntTSL 2 BASIC21.56■■□□□ 1.04
YBX1P67809 TSPAN17-207ENST00000508164 2457 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
YBX1P67809 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC21.56■■□□□ 1.04
YBX1P67809 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
YBX1P67809 TDRKH-205ENST00000368827 2318 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
YBX1P67809 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
YBX1P67809 GUSBP5-202ENST00000510805 1989 ntBASIC21.56■■□□□ 1.04
YBX1P67809 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
YBX1P67809 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
YBX1P67809 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
YBX1P67809 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC21.55■■□□□ 1.04
YBX1P67809 GNPTAB-201ENST00000299314 5701 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
YBX1P67809 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
Retrieved 100 of 98,524 protein–RNA pairs in 64.1 ms