Protein–RNA interactions for Protein: P43378

PTPN9, Tyrosine-protein phosphatase non-receptor type 9, humanhuman

Predictions only

Length 593 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9P43378 RBM4B-203ENST00000525754 2339 ntAPPRIS P1 TSL 2 BASIC23.09■■□□□ 1.29
PTPN9P43378 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC23.09■■□□□ 1.29
PTPN9P43378 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
PTPN9P43378 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC23.09■■□□□ 1.29
PTPN9P43378 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC23.09■■□□□ 1.29
PTPN9P43378 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
PTPN9P43378 AL136116.3-201ENST00000402907 1138 ntBASIC23.09■■□□□ 1.29
PTPN9P43378 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC23.09■■□□□ 1.29
PTPN9P43378 MIR3181-201ENST00000578512 73 ntBASIC23.09■■□□□ 1.29
PTPN9P43378 KRTAP5-4-202ENST00000616115 660 ntAPPRIS ALT2 TSL 5 BASIC23.09■■□□□ 1.29
PTPN9P43378 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
PTPN9P43378 CACNB1-201ENST00000344140 1889 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
PTPN9P43378 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC23.09■■□□□ 1.29
PTPN9P43378 ZNF76-203ENST00000373953 2716 ntAPPRIS P1 TSL 1 (best) BASIC23.09■■□□□ 1.29
PTPN9P43378 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC23.09■■□□□ 1.29
PTPN9P43378 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
PTPN9P43378 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC23.08■■□□□ 1.29
PTPN9P43378 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC23.08■■□□□ 1.29
PTPN9P43378 AC004687.1-201ENST00000579003 1625 ntBASIC23.08■■□□□ 1.29
PTPN9P43378 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC23.08■■□□□ 1.29
PTPN9P43378 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
PTPN9P43378 BFSP1-202ENST00000377873 2207 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
PTPN9P43378 MAL2-204ENST00000614891 2818 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
PTPN9P43378 KRTAP5-4-201ENST00000399682 1181 ntAPPRIS P5 BASIC23.08■■□□□ 1.29
PTPN9P43378 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC23.08■■□□□ 1.29
PTPN9P43378 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC23.08■■□□□ 1.28
PTPN9P43378 COMT-203ENST00000403184 2217 ntTSL 2 BASIC23.08■■□□□ 1.28
PTPN9P43378 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC23.08■■□□□ 1.28
PTPN9P43378 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC23.08■■□□□ 1.28
PTPN9P43378 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC23.07■■□□□ 1.28
PTPN9P43378 ST8SIA6-201ENST00000377602 2276 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
PTPN9P43378 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC23.07■■□□□ 1.28
PTPN9P43378 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC23.07■■□□□ 1.28
PTPN9P43378 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC23.07■■□□□ 1.28
PTPN9P43378 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC23.07■■□□□ 1.28
PTPN9P43378 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC23.07■■□□□ 1.28
PTPN9P43378 DUX4L19-201ENST00000557448 1267 ntBASIC23.07■■□□□ 1.28
PTPN9P43378 LINC01632-201ENST00000615763 496 ntTSL 3 BASIC23.07■■□□□ 1.28
PTPN9P43378 AC133637.1-201ENST00000624115 1537 ntBASIC23.07■■□□□ 1.28
PTPN9P43378 GALC-202ENST00000393568 2054 ntTSL 2 BASIC23.07■■□□□ 1.28
PTPN9P43378 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC23.07■■□□□ 1.28
PTPN9P43378 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC23.06■■□□□ 1.28
PTPN9P43378 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC23.06■■□□□ 1.28
PTPN9P43378 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC23.06■■□□□ 1.28
PTPN9P43378 AL138724.1-201ENST00000606771 1088 ntBASIC23.06■■□□□ 1.28
PTPN9P43378 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC23.06■■□□□ 1.28
PTPN9P43378 CCDC166-201ENST00000542437 1320 ntAPPRIS P1 TSL 2 BASIC23.06■■□□□ 1.28
PTPN9P43378 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC23.06■■□□□ 1.28
PTPN9P43378 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC23.05■■□□□ 1.28
PTPN9P43378 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
PTPN9P43378 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC23.05■■□□□ 1.28
PTPN9P43378 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC23.05■■□□□ 1.28
PTPN9P43378 MYCBPAP-202ENST00000419930 1640 ntAPPRIS ALT2 TSL 1 (best) BASIC23.05■■□□□ 1.28
PTPN9P43378 PRICKLE4-201ENST00000394259 939 ntAPPRIS ALT2 TSL 5 BASIC23.05■■□□□ 1.28
PTPN9P43378 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC23.05■■□□□ 1.28
PTPN9P43378 AC091982.4-201ENST00000623943 726 ntTSL 2 BASIC23.05■■□□□ 1.28
PTPN9P43378 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
PTPN9P43378 AC233992.2-201ENST00000531225 1596 ntAPPRIS P1 TSL 2 BASIC23.05■■□□□ 1.28
PTPN9P43378 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC23.05■■□□□ 1.28
PTPN9P43378 ST3GAL5-268ENST00000640982 2465 ntAPPRIS ALT2 TSL 5 BASIC23.04■■□□□ 1.28
PTPN9P43378 ESRRAP2-201ENST00000418437 1549 ntBASIC23.04■■□□□ 1.28
PTPN9P43378 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC23.04■■□□□ 1.28
PTPN9P43378 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC23.04■■□□□ 1.28
PTPN9P43378 PTCHD3P2-201ENST00000424937 1205 ntBASIC23.04■■□□□ 1.28
PTPN9P43378 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC23.04■■□□□ 1.28
PTPN9P43378 SF1-220ENST00000626028 704 ntTSL 2 BASIC23.04■■□□□ 1.28
PTPN9P43378 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC23.04■■□□□ 1.28
PTPN9P43378 SYT6-210ENST00000641643 1587 ntBASIC23.04■■□□□ 1.28
PTPN9P43378 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC23.04■■□□□ 1.28
PTPN9P43378 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC23.03■■□□□ 1.28
PTPN9P43378 SERBP1P1-201ENST00000396021 1160 ntBASIC23.03■■□□□ 1.28
PTPN9P43378 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
PTPN9P43378 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
PTPN9P43378 CADM1-201ENST00000331581 1766 ntTSL 1 (best) BASIC23.03■■□□□ 1.28
PTPN9P43378 EEF1D-201ENST00000317198 1458 ntAPPRIS ALT2 TSL 5 BASIC23.03■■□□□ 1.28
PTPN9P43378 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
PTPN9P43378 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
PTPN9P43378 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC23.02■■□□□ 1.28
PTPN9P43378 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC23.02■■□□□ 1.28
PTPN9P43378 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
PTPN9P43378 NKX2-5-202ENST00000424406 1124 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
PTPN9P43378 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC23.02■■□□□ 1.28
PTPN9P43378 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC23.02■■□□□ 1.28
PTPN9P43378 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC23.02■■□□□ 1.28
PTPN9P43378 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC23.02■■□□□ 1.28
PTPN9P43378 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC23.02■■□□□ 1.28
PTPN9P43378 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
PTPN9P43378 AC008406.3-201ENST00000620001 1374 ntBASIC23.01■■□□□ 1.27
PTPN9P43378 DOK1-203ENST00000409429 1955 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
PTPN9P43378 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
PTPN9P43378 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
PTPN9P43378 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC23.01■■□□□ 1.27
PTPN9P43378 DTNB-210ENST00000407186 2275 ntTSL 5 BASIC23.01■■□□□ 1.27
PTPN9P43378 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
PTPN9P43378 CDKN2B-202ENST00000380142 859 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
PTPN9P43378 HES6-206ENST00000409574 738 ntTSL 2 BASIC23.01■■□□□ 1.27
PTPN9P43378 AC007009.1-201ENST00000458624 429 ntTSL 2 BASIC23.01■■□□□ 1.27
PTPN9P43378 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC23.01■■□□□ 1.27
PTPN9P43378 ATP5G2-208ENST00000552242 1950 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
PTPN9P43378 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC23.01■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms