Protein–RNA interactions for Protein: P40939

HADHA, Trifunctional enzyme subunit alpha, mitochondrial, humanhuman

Predictions only

Length 763 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HADHAP40939 NKILA-201ENST00000613231 537 ntTSL 4 BASIC22.34■■□□□ 1.17
HADHAP40939 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC22.34■■□□□ 1.17
HADHAP40939 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
HADHAP40939 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
HADHAP40939 GUSBP5-202ENST00000510805 1989 ntBASIC22.34■■□□□ 1.17
HADHAP40939 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC22.34■■□□□ 1.17
HADHAP40939 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC22.34■■□□□ 1.17
HADHAP40939 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.17
HADHAP40939 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC22.33■■□□□ 1.17
HADHAP40939 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC22.33■■□□□ 1.16
HADHAP40939 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC22.33■■□□□ 1.16
HADHAP40939 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC22.32■■□□□ 1.16
HADHAP40939 SLC10A3-201ENST00000263512 2161 ntAPPRIS P3 TSL 2 BASIC22.32■■□□□ 1.16
HADHAP40939 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC22.32■■□□□ 1.16
HADHAP40939 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC22.32■■□□□ 1.16
HADHAP40939 ECEL1P1-201ENST00000373592 1742 ntBASIC22.32■■□□□ 1.16
HADHAP40939 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC22.32■■□□□ 1.16
HADHAP40939 ASB1-202ENST00000409297 878 ntTSL 5 BASIC22.32■■□□□ 1.16
HADHAP40939 RNF225-201ENST00000601382 990 ntAPPRIS P1 BASIC22.32■■□□□ 1.16
HADHAP40939 AC131212.1-201ENST00000613771 668 ntBASIC22.32■■□□□ 1.16
HADHAP40939 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC22.32■■□□□ 1.16
HADHAP40939 C14orf80-206ENST00000392527 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC22.32■■□□□ 1.16
HADHAP40939 LYPLA1-201ENST00000316963 2585 ntAPPRIS P1 TSL 1 (best) BASIC22.32■■□□□ 1.16
HADHAP40939 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
HADHAP40939 EGR4-202ENST00000545030 2372 ntAPPRIS P2 TSL 1 (best) BASIC22.31■■□□□ 1.16
HADHAP40939 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
HADHAP40939 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC22.31■■□□□ 1.16
HADHAP40939 DNAJC4-202ENST00000321685 1288 ntAPPRIS P3 TSL 1 (best) BASIC22.31■■□□□ 1.16
HADHAP40939 CDKN2A-207ENST00000497750 565 ntTSL 4 BASIC22.31■■□□□ 1.16
HADHAP40939 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC22.31■■□□□ 1.16
HADHAP40939 DUX4L4-201ENST00000566884 1269 ntBASIC22.31■■□□□ 1.16
HADHAP40939 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
HADHAP40939 SRR-208ENST00000576848 588 ntTSL 4 BASIC22.31■■□□□ 1.16
HADHAP40939 CDKN2A-212ENST00000578845 678 ntTSL 2 BASIC22.31■■□□□ 1.16
HADHAP40939 DNAJC4-212ENST00000628077 938 ntTSL 5 BASIC22.31■■□□□ 1.16
HADHAP40939 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC22.31■■□□□ 1.16
HADHAP40939 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC22.31■■□□□ 1.16
HADHAP40939 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC22.31■■□□□ 1.16
HADHAP40939 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC22.31■■□□□ 1.16
HADHAP40939 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC22.31■■□□□ 1.16
HADHAP40939 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC22.31■■□□□ 1.16
HADHAP40939 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC22.31■■□□□ 1.16
HADHAP40939 SHMT1-201ENST00000316694 2464 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
HADHAP40939 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC22.31■■□□□ 1.16
HADHAP40939 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC22.31■■□□□ 1.16
HADHAP40939 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC22.3■■□□□ 1.16
HADHAP40939 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC22.3■■□□□ 1.16
HADHAP40939 PCMTD2-202ENST00000299468 1049 ntTSL 5 BASIC22.3■■□□□ 1.16
HADHAP40939 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC22.3■■□□□ 1.16
HADHAP40939 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
HADHAP40939 LINC01881-206ENST00000614114 957 ntTSL 2 BASIC22.3■■□□□ 1.16
HADHAP40939 NRG3-201ENST00000372141 2158 ntAPPRIS P3 TSL 1 (best) BASIC22.3■■□□□ 1.16
HADHAP40939 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
HADHAP40939 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
HADHAP40939 LINC00526-201ENST00000581067 1875 ntBASIC22.3■■□□□ 1.16
HADHAP40939 GAL3ST1-202ENST00000401975 1791 ntAPPRIS P1 TSL 1 (best) BASIC22.3■■□□□ 1.16
HADHAP40939 AC127496.7-201ENST00000625110 1798 ntBASIC22.3■■□□□ 1.16
HADHAP40939 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
HADHAP40939 VGF-203ENST00000611537 1622 ntTSL 5 BASIC22.29■■□□□ 1.16
HADHAP40939 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
HADHAP40939 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC22.29■■□□□ 1.16
HADHAP40939 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC22.29■■□□□ 1.16
HADHAP40939 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC22.29■■□□□ 1.16
HADHAP40939 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC22.29■■□□□ 1.16
HADHAP40939 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC22.29■■□□□ 1.16
HADHAP40939 PHF2-201ENST00000359246 5569 ntAPPRIS P1 TSL 1 (best) BASIC22.29■■□□□ 1.16
HADHAP40939 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC22.29■■□□□ 1.16
HADHAP40939 TPRN-202ENST00000409012 2718 ntAPPRIS P2 TSL 1 (best) BASIC22.29■■□□□ 1.16
HADHAP40939 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC22.28■■□□□ 1.16
HADHAP40939 ATP9A-202ENST00000338821 8106 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
HADHAP40939 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC22.28■■□□□ 1.16
HADHAP40939 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC22.28■■□□□ 1.16
HADHAP40939 RPP21-222ENST00000433076 577 ntTSL 2 BASIC22.28■■□□□ 1.16
HADHAP40939 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC22.28■■□□□ 1.16
HADHAP40939 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC22.28■■□□□ 1.16
HADHAP40939 AC241377.3-202ENST00000626088 1088 ntBASIC22.28■■□□□ 1.16
HADHAP40939 AC241585.3-202ENST00000628937 1088 ntBASIC22.28■■□□□ 1.16
HADHAP40939 AC245100.8-202ENST00000629247 1058 ntBASIC22.28■■□□□ 1.16
HADHAP40939 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
HADHAP40939 RPL13-202ENST00000393099 2385 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
HADHAP40939 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
HADHAP40939 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC22.28■■□□□ 1.16
HADHAP40939 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC22.28■■□□□ 1.16
HADHAP40939 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC22.27■■□□□ 1.16
HADHAP40939 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
HADHAP40939 ARL2BP-201ENST00000219204 2130 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
HADHAP40939 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
HADHAP40939 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC22.27■■□□□ 1.16
HADHAP40939 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
HADHAP40939 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC22.27■■□□□ 1.16
HADHAP40939 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC22.27■■□□□ 1.16
HADHAP40939 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC22.27■■□□□ 1.16
HADHAP40939 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC22.27■■□□□ 1.15
HADHAP40939 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC22.26■■□□□ 1.15
HADHAP40939 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC22.26■■□□□ 1.15
HADHAP40939 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
HADHAP40939 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC22.26■■□□□ 1.15
HADHAP40939 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
HADHAP40939 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC22.26■■□□□ 1.15
HADHAP40939 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC22.26■■□□□ 1.15
Retrieved 100 of 98,524 protein–RNA pairs in 16.1 ms