Protein–RNA interactions for Protein: P33076

CIITA, MHC class II transactivator, humanhuman

Predictions only

Length 1,130 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CIITAP33076 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC25.09■■□□□ 1.61
CIITAP33076 TMEM150C-201ENST00000449862 1990 ntAPPRIS P1 TSL 1 (best) BASIC25.09■■□□□ 1.61
CIITAP33076 CCDC107-205ENST00000421582 1324 ntAPPRIS ALT2 TSL 2 BASIC25.09■■□□□ 1.61
CIITAP33076 JAG2-202ENST00000347004 5720 ntTSL 1 (best) BASIC25.09■■□□□ 1.61
CIITAP33076 RBPMS2-201ENST00000300069 2008 ntAPPRIS P1 TSL 1 (best) BASIC25.08■■□□□ 1.61
CIITAP33076 TTLL11-202ENST00000373776 2012 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
CIITAP33076 KHSRP-201ENST00000398148 2993 ntAPPRIS P2 TSL 1 (best) BASIC25.08■■□□□ 1.61
CIITAP33076 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC25.08■■□□□ 1.61
CIITAP33076 RASA4CP-201ENST00000424092 1398 ntBASIC25.08■■□□□ 1.61
CIITAP33076 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
CIITAP33076 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC25.08■■□□□ 1.61
CIITAP33076 IFFO2-203ENST00000455833 6188 ntAPPRIS P1 TSL 5 BASIC25.08■■□□□ 1.61
CIITAP33076 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC25.08■■□□□ 1.61
CIITAP33076 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC25.08■■□□□ 1.61
CIITAP33076 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC25.08■■□□□ 1.61
CIITAP33076 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC25.08■■□□□ 1.6
CIITAP33076 AC004687.1-201ENST00000579003 1625 ntBASIC25.08■■□□□ 1.6
CIITAP33076 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC25.08■■□□□ 1.6
CIITAP33076 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
CIITAP33076 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
CIITAP33076 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC25.07■■□□□ 1.6
CIITAP33076 MGAT5B-207ENST00000565675 872 ntTSL 1 (best) BASIC25.07■■□□□ 1.6
CIITAP33076 AC010525.1-201ENST00000585559 441 ntBASIC25.07■■□□□ 1.6
CIITAP33076 AC008764.7-201ENST00000593779 1081 ntBASIC25.07■■□□□ 1.6
CIITAP33076 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC25.07■■□□□ 1.6
CIITAP33076 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC25.07■■□□□ 1.6
CIITAP33076 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC25.07■■□□□ 1.6
CIITAP33076 MRPS2-202ENST00000371785 1640 ntAPPRIS P1 TSL 3 BASIC25.07■■□□□ 1.6
CIITAP33076 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC25.07■■□□□ 1.6
CIITAP33076 NFE2L3P1-201ENST00000588207 1959 ntBASIC25.07■■□□□ 1.6
CIITAP33076 AC019069.1-201ENST00000610008 1333 ntBASIC25.07■■□□□ 1.6
CIITAP33076 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC25.06■■□□□ 1.6
CIITAP33076 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC25.06■■□□□ 1.6
CIITAP33076 EBPL-204ENST00000378272 766 ntTSL 3 BASIC25.06■■□□□ 1.6
CIITAP33076 MPST-208ENST00000628507 698 ntTSL 5 BASIC25.06■■□□□ 1.6
CIITAP33076 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC25.06■■□□□ 1.6
CIITAP33076 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC25.06■■□□□ 1.6
CIITAP33076 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC25.05■■□□□ 1.6
CIITAP33076 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC25.05■■□□□ 1.6
CIITAP33076 SPINT2-201ENST00000301244 1802 ntAPPRIS P2 TSL 1 (best) BASIC25.05■■□□□ 1.6
CIITAP33076 RASSF5-202ENST00000579436 2064 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
CIITAP33076 TRIR-201ENST00000242784 970 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
CIITAP33076 AC099791.1-201ENST00000416440 715 ntBASIC25.05■■□□□ 1.6
CIITAP33076 CA15P2-201ENST00000611168 834 ntBASIC25.05■■□□□ 1.6
CIITAP33076 SIAH2-201ENST00000312960 2517 ntAPPRIS P1 TSL 1 (best) BASIC25.05■■□□□ 1.6
CIITAP33076 VPS53-211ENST00000571805 2356 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
CIITAP33076 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC25.04■■□□□ 1.6
CIITAP33076 SIRT3-204ENST00000525319 1475 ntAPPRIS ALT2 TSL 2 BASIC25.04■■□□□ 1.6
CIITAP33076 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC25.04■■□□□ 1.6
CIITAP33076 IQCJ-SCHIP1-203ENST00000476809 1780 ntAPPRIS ALT2 TSL 5 BASIC25.04■■□□□ 1.6
CIITAP33076 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC25.04■■□□□ 1.6
CIITAP33076 AC104564.5-201ENST00000584986 278 ntTSL 3 BASIC25.04■■□□□ 1.6
CIITAP33076 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC25.04■■□□□ 1.6
CIITAP33076 PCDH1-204ENST00000503492 2373 ntTSL 5 BASIC25.04■■□□□ 1.6
CIITAP33076 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC25.04■■□□□ 1.6
CIITAP33076 P3H3-201ENST00000290510 2632 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
CIITAP33076 MRPL46-201ENST00000312475 1019 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
CIITAP33076 STOML2-201ENST00000356493 1278 ntAPPRIS P1 TSL 1 (best) BASIC25.03■■□□□ 1.6
CIITAP33076 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC25.03■■□□□ 1.6
CIITAP33076 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC25.03■■□□□ 1.6
CIITAP33076 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC25.03■■□□□ 1.6
CIITAP33076 HSF1-201ENST00000400780 2105 ntTSL 5 BASIC25.03■■□□□ 1.6
CIITAP33076 MPND-202ENST00000359935 1475 ntAPPRIS ALT2 TSL 2 BASIC25.02■■□□□ 1.6
CIITAP33076 IRX5-201ENST00000320990 2061 ntAPPRIS ALT1 TSL 1 (best) BASIC25.02■■□□□ 1.6
CIITAP33076 BRD3-202ENST00000371834 2529 ntAPPRIS ALT2 TSL 1 (best) BASIC25.02■■□□□ 1.6
CIITAP33076 HSD17B14-201ENST00000263278 1238 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
CIITAP33076 PARD6B-202ENST00000396039 522 ntTSL 1 (best) BASIC25.02■■□□□ 1.6
CIITAP33076 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC25.02■■□□□ 1.6
CIITAP33076 GJD3-201ENST00000578689 885 ntAPPRIS P1 BASIC25.02■■□□□ 1.6
CIITAP33076 DIRAS1-202ENST00000585334 774 ntAPPRIS P1 BASIC25.02■■□□□ 1.6
CIITAP33076 DUSP8P5-201ENST00000422884 1815 ntBASIC25.02■■□□□ 1.6
CIITAP33076 DVL1-201ENST00000378888 3239 ntAPPRIS ALT1 TSL 5 BASIC25.02■■□□□ 1.6
CIITAP33076 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
CIITAP33076 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC25.01■■□□□ 1.59
CIITAP33076 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC25.01■■□□□ 1.59
CIITAP33076 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC25.01■■□□□ 1.59
CIITAP33076 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC25.01■■□□□ 1.59
CIITAP33076 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC25.01■■□□□ 1.59
CIITAP33076 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC25.01■■□□□ 1.59
CIITAP33076 PCSK6-216ENST00000615296 2921 ntTSL 5 BASIC25.01■■□□□ 1.59
CIITAP33076 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC25.01■■□□□ 1.59
CIITAP33076 FAM167A-204ENST00000528897 1620 ntAPPRIS P1 TSL 2 BASIC25.01■■□□□ 1.59
CIITAP33076 CERS4-205ENST00000558331 1803 ntTSL 5 BASIC25■■□□□ 1.59
CIITAP33076 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC25■■□□□ 1.59
CIITAP33076 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC25■■□□□ 1.59
CIITAP33076 ATAD3B-201ENST00000308647 2448 ntAPPRIS P1 TSL 1 (best) BASIC25■■□□□ 1.59
CIITAP33076 HYI-206ENST00000372434 1025 ntTSL 5 BASIC25■■□□□ 1.59
CIITAP33076 AC084116.4-201ENST00000524320 484 ntTSL 2 BASIC25■■□□□ 1.59
CIITAP33076 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC25■■□□□ 1.59
CIITAP33076 PPP1R12B-202ENST00000356764 1687 ntTSL 1 (best) BASIC25■■□□□ 1.59
CIITAP33076 DENND2D-202ENST00000369752 1894 ntAPPRIS ALT2 TSL 2 BASIC25■■□□□ 1.59
CIITAP33076 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC25■■□□□ 1.59
CIITAP33076 OAZ2-201ENST00000326005 1934 ntAPPRIS P1 TSL 5 BASIC24.99■■□□□ 1.59
CIITAP33076 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC24.99■■□□□ 1.59
CIITAP33076 RCN2-202ENST00000394883 1366 ntTSL 5 BASIC24.99■■□□□ 1.59
CIITAP33076 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC24.99■■□□□ 1.59
CIITAP33076 NKX2-2-AS1-201ENST00000549659 638 ntTSL 5 BASIC24.99■■□□□ 1.59
CIITAP33076 ACYP1-205ENST00000555463 789 ntTSL 2 BASIC24.99■■□□□ 1.59
CIITAP33076 PLEKHJ1-206ENST00000587962 1311 ntTSL 2 BASIC24.99■■□□□ 1.59
CIITAP33076 HOXA10-206ENST00000613671 2175 ntTSL 5 BASIC24.99■■□□□ 1.59
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms