Protein–RNA interactions for Protein: A8TX70

COL6A5, Collagen alpha-5(VI) chain, humanhuman

Predictions only

Length 2,615 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A5A8TX70 AK4-208ENST00000546702 1335 ntTSL 1 (best) BASIC17.54■□□□□ 0.4
COL6A5A8TX70 RARA-203ENST00000394086 2008 ntTSL 2 BASIC17.54■□□□□ 0.4
COL6A5A8TX70 C2CD4D-201ENST00000454109 1757 ntAPPRIS P1 TSL 2 BASIC17.54■□□□□ 0.4
COL6A5A8TX70 ZNF324-202ENST00000535298 1006 ntTSL 5 BASIC17.53■□□□□ 0.4
COL6A5A8TX70 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC17.53■□□□□ 0.4
COL6A5A8TX70 AC135048.1-201ENST00000566056 1318 ntTSL 2 BASIC17.53■□□□□ 0.4
COL6A5A8TX70 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL6A5A8TX70 ZNF580-201ENST00000325333 1261 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL6A5A8TX70 AC128676.1-201ENST00000454392 318 ntBASIC17.53■□□□□ 0.4
COL6A5A8TX70 FAM163B-202ENST00000496132 811 ntAPPRIS P1 TSL 3 BASIC17.53■□□□□ 0.4
COL6A5A8TX70 ZNF580-203ENST00000545125 1025 ntAPPRIS P1 TSL 3 BASIC17.53■□□□□ 0.4
COL6A5A8TX70 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC17.53■□□□□ 0.4
COL6A5A8TX70 MIR4758-201ENST00000577688 71 ntBASIC17.53■□□□□ 0.4
COL6A5A8TX70 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
COL6A5A8TX70 GTF2E2-201ENST00000355904 1762 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL6A5A8TX70 KCTD17-202ENST00000403888 1763 ntAPPRIS ALT2 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL6A5A8TX70 TTBK2-205ENST00000567274 1777 ntTSL 5 BASIC17.53■□□□□ 0.4
COL6A5A8TX70 MXRA7-202ENST00000375036 1950 ntAPPRIS ALT2 TSL 2 BASIC17.53■□□□□ 0.4
COL6A5A8TX70 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.53■□□□□ 0.4
COL6A5A8TX70 RBMXL2-201ENST00000306904 1874 ntAPPRIS P1 BASIC17.53■□□□□ 0.4
COL6A5A8TX70 PPP1CA-202ENST00000358239 1054 ntTSL 2 BASIC17.52■□□□□ 0.4
COL6A5A8TX70 THAP11-201ENST00000303596 2114 ntAPPRIS P1 BASIC17.52■□□□□ 0.4
COL6A5A8TX70 ST7-208ENST00000393451 2110 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.4
COL6A5A8TX70 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC17.52■□□□□ 0.4
COL6A5A8TX70 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC17.52■□□□□ 0.4
COL6A5A8TX70 SMNDC1-201ENST00000369592 1110 ntAPPRIS P1 TSL 3 BASIC17.52■□□□□ 0.4
COL6A5A8TX70 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC17.52■□□□□ 0.4
COL6A5A8TX70 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC17.52■□□□□ 0.4
COL6A5A8TX70 LINC01637-201ENST00000444039 684 ntTSL 2 BASIC17.52■□□□□ 0.4
COL6A5A8TX70 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC17.52■□□□□ 0.4
COL6A5A8TX70 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC17.52■□□□□ 0.4
COL6A5A8TX70 FAM118A-205ENST00000441876 1776 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
COL6A5A8TX70 KLHDC9-201ENST00000368011 1314 ntAPPRIS P1 TSL 1 (best) BASIC17.52■□□□□ 0.39
COL6A5A8TX70 SGMS1-210ENST00000619438 1680 ntTSL 5 BASIC17.52■□□□□ 0.39
COL6A5A8TX70 REXO4-201ENST00000371935 1899 ntTSL 3 BASIC17.52■□□□□ 0.39
COL6A5A8TX70 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL6A5A8TX70 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC17.51■□□□□ 0.39
COL6A5A8TX70 ZNF337-AS1-204ENST00000428254 817 ntTSL 5 BASIC17.51■□□□□ 0.39
COL6A5A8TX70 OR2I1P-207ENST00000453522 948 ntBASIC17.51■□□□□ 0.39
COL6A5A8TX70 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC17.51■□□□□ 0.39
COL6A5A8TX70 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC17.51■□□□□ 0.39
COL6A5A8TX70 PPAN-201ENST00000253107 1657 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL6A5A8TX70 SNRNP25-202ENST00000383018 1085 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL6A5A8TX70 UBB-203ENST00000395839 1012 ntAPPRIS P1 TSL 2 BASIC17.51■□□□□ 0.39
COL6A5A8TX70 EP300-AS1-201ENST00000420537 457 ntTSL 3 BASIC17.51■□□□□ 0.39
COL6A5A8TX70 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC17.51■□□□□ 0.39
COL6A5A8TX70 AC105036.2-201ENST00000569468 176 ntBASIC17.51■□□□□ 0.39
COL6A5A8TX70 UBE2DNL-204ENST00000602536 740 ntBASIC17.51■□□□□ 0.39
COL6A5A8TX70 P2RX4-203ENST00000359949 1836 ntTSL 5 BASIC17.51■□□□□ 0.39
COL6A5A8TX70 LACTB-201ENST00000261893 1972 ntAPPRIS P1 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL6A5A8TX70 METTL5-206ENST00000409965 880 ntAPPRIS P2 TSL 1 (best) BASIC17.51■□□□□ 0.39
COL6A5A8TX70 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC17.51■□□□□ 0.39
COL6A5A8TX70 CCDC74B-204ENST00000409234 871 ntAPPRIS ALT2 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL6A5A8TX70 CLN6-207ENST00000566347 981 ntTSL 1 (best) BASIC17.5■□□□□ 0.39
COL6A5A8TX70 AC083880.1-201ENST00000608266 535 ntBASIC17.5■□□□□ 0.39
COL6A5A8TX70 IGFBP3-211ENST00000615754 792 ntTSL 5 BASIC17.5■□□□□ 0.39
COL6A5A8TX70 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC17.5■□□□□ 0.39
COL6A5A8TX70 USF2-201ENST00000222305 1634 ntAPPRIS P1 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL6A5A8TX70 USF2-207ENST00000595068 1612 ntTSL 5 BASIC17.5■□□□□ 0.39
COL6A5A8TX70 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC17.5■□□□□ 0.39
COL6A5A8TX70 EMC6-202ENST00000397133 762 ntAPPRIS P1 TSL 2 BASIC17.5■□□□□ 0.39
COL6A5A8TX70 SHOX2-201ENST00000389589 2072 ntAPPRIS P3 TSL 1 (best) BASIC17.5■□□□□ 0.39
COL6A5A8TX70 UBE2E3-201ENST00000392415 1347 ntAPPRIS P1 TSL 3 BASIC17.49■□□□□ 0.39
COL6A5A8TX70 C8orf58-201ENST00000289989 2016 ntAPPRIS P3 TSL 5 BASIC17.49■□□□□ 0.39
COL6A5A8TX70 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC17.49■□□□□ 0.39
COL6A5A8TX70 LARP6-202ENST00000344870 527 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL6A5A8TX70 ADM-205ENST00000528544 586 ntTSL 2 BASIC17.49■□□□□ 0.39
COL6A5A8TX70 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC17.49■□□□□ 0.39
COL6A5A8TX70 MMD2-204ENST00000612910 778 ntTSL 5 BASIC17.49■□□□□ 0.39
COL6A5A8TX70 ANKS3-203ENST00000450067 2272 ntTSL 5 BASIC17.49■□□□□ 0.39
COL6A5A8TX70 BCAT2-208ENST00000598162 1329 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL6A5A8TX70 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL6A5A8TX70 SEPT3-203ENST00000396426 2586 ntAPPRIS P4 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL6A5A8TX70 MAF-201ENST00000326043 2646 ntAPPRIS P3 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL6A5A8TX70 ZNF511-202ENST00000361518 1520 ntAPPRIS P1 TSL 1 (best) BASIC17.49■□□□□ 0.39
COL6A5A8TX70 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC17.49■□□□□ 0.39
COL6A5A8TX70 FUT11-202ENST00000394790 2175 ntTSL 1 (best) BASIC17.49■□□□□ 0.39
COL6A5A8TX70 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC17.48■□□□□ 0.39
COL6A5A8TX70 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC17.48■□□□□ 0.39
COL6A5A8TX70 C19orf47-202ENST00000392035 2126 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL6A5A8TX70 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL6A5A8TX70 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL6A5A8TX70 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
COL6A5A8TX70 RHOC-203ENST00000369632 1026 ntAPPRIS P1 TSL 3 BASIC17.48■□□□□ 0.39
COL6A5A8TX70 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC17.48■□□□□ 0.39
COL6A5A8TX70 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC17.48■□□□□ 0.39
COL6A5A8TX70 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL6A5A8TX70 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL6A5A8TX70 TMIE-201ENST00000326431 1824 ntAPPRIS P1 TSL 1 (best) BASIC17.48■□□□□ 0.39
COL6A5A8TX70 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC17.48■□□□□ 0.39
COL6A5A8TX70 SYNGR1-201ENST00000216155 497 ntTSL 3 BASIC17.48■□□□□ 0.39
COL6A5A8TX70 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC17.48■□□□□ 0.39
COL6A5A8TX70 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC17.48■□□□□ 0.39
COL6A5A8TX70 AL445228.2-201ENST00000605589 952 ntBASIC17.48■□□□□ 0.39
COL6A5A8TX70 LINC01023-201ENST00000606054 436 ntBASIC17.48■□□□□ 0.39
COL6A5A8TX70 MME-217ENST00000616757 1315 ntTSL 5 BASIC17.48■□□□□ 0.39
COL6A5A8TX70 B4GAT1-201ENST00000311181 2072 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL6A5A8TX70 UCK1-204ENST00000372215 2167 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
COL6A5A8TX70 TCF24-201ENST00000563496 2450 ntAPPRIS P1 TSL 5 BASIC17.47■□□□□ 0.39
COL6A5A8TX70 PTH1R-206ENST00000430002 1947 ntAPPRIS P1 TSL 1 (best) BASIC17.47■□□□□ 0.39
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms