Protein–RNA interactions for Protein: A6NMZ7

COL6A6, Collagen alpha-6(VI) chain, humanhuman

Predictions only

Length 2,263 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A6A6NMZ7 ADSSL1-201ENST00000330877 1766 ntAPPRIS P1 TSL 1 (best) BASIC20.21■□□□□ 0.83
COL6A6A6NMZ7 C19orf12-205ENST00000392278 895 ntTSL 2 BASIC20.2■□□□□ 0.82
COL6A6A6NMZ7 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL6A6A6NMZ7 AC018413.1-201ENST00000581996 1200 ntTSL 2 BASIC20.2■□□□□ 0.82
COL6A6A6NMZ7 C19orf25-213ENST00000592872 1287 ntAPPRIS P1 TSL 2 BASIC20.2■□□□□ 0.82
COL6A6A6NMZ7 RNF19B-201ENST00000235150 2334 ntAPPRIS ALT2 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL6A6A6NMZ7 CERKL-204ENST00000374970 1392 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL6A6A6NMZ7 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC20.2■□□□□ 0.82
COL6A6A6NMZ7 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL6A6A6NMZ7 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL6A6A6NMZ7 ANP32AP1-202ENST00000560832 1074 ntTSL 1 (best) BASIC20.2■□□□□ 0.82
COL6A6A6NMZ7 IGFALS-203ENST00000568221 730 ntTSL 4 BASIC20.2■□□□□ 0.82
COL6A6A6NMZ7 PLSCR3-209ENST00000574401 2032 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
COL6A6A6NMZ7 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL6A6A6NMZ7 TMEM104-205ENST00000582773 1740 ntTSL 2 BASIC20.19■□□□□ 0.82
COL6A6A6NMZ7 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC20.19■□□□□ 0.82
COL6A6A6NMZ7 AC098590.1-201ENST00000468126 897 ntBASIC20.19■□□□□ 0.82
COL6A6A6NMZ7 C11orf80-204ENST00000525908 2135 ntAPPRIS P3 TSL 2 BASIC20.19■□□□□ 0.82
COL6A6A6NMZ7 SLC7A5P1-201ENST00000568957 537 ntBASIC20.19■□□□□ 0.82
COL6A6A6NMZ7 IKBIP-202ENST00000342502 1645 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL6A6A6NMZ7 CPSF4-204ENST00000436336 1738 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
COL6A6A6NMZ7 CNN2P6-201ENST00000439038 900 ntBASIC20.19■□□□□ 0.82
COL6A6A6NMZ7 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL6A6A6NMZ7 CBFB-203ENST00000561924 584 ntTSL 5 BASIC20.19■□□□□ 0.82
COL6A6A6NMZ7 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
COL6A6A6NMZ7 OSCAR-205ENST00000359649 1892 ntAPPRIS P4 TSL 2 BASIC20.19■□□□□ 0.82
COL6A6A6NMZ7 DNMT3A-206ENST00000406659 1775 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COL6A6A6NMZ7 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL6A6A6NMZ7 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COL6A6A6NMZ7 RABEP2-203ENST00000544477 1645 ntTSL 2 BASIC20.18■□□□□ 0.82
COL6A6A6NMZ7 NAA60-204ENST00000421765 1045 ntTSL 2 BASIC20.18■□□□□ 0.82
COL6A6A6NMZ7 VGLL4-208ENST00000424529 1025 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COL6A6A6NMZ7 GCSHP5-201ENST00000443090 522 ntBASIC20.18■□□□□ 0.82
COL6A6A6NMZ7 ULK4P1-204ENST00000565949 721 ntTSL 4 BASIC20.18■□□□□ 0.82
COL6A6A6NMZ7 AC133041.1-202ENST00000642053 222 ntBASIC20.18■□□□□ 0.82
COL6A6A6NMZ7 HSPB2-201ENST00000304298 1335 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL6A6A6NMZ7 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL6A6A6NMZ7 SERF1A-202ENST00000354833 1889 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COL6A6A6NMZ7 SERF1B-201ENST00000380750 1889 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
COL6A6A6NMZ7 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL6A6A6NMZ7 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC20.18■□□□□ 0.82
COL6A6A6NMZ7 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
COL6A6A6NMZ7 MAD2L2-201ENST00000235310 1860 ntAPPRIS P1 TSL 2 BASIC20.18■□□□□ 0.82
COL6A6A6NMZ7 TSEN54-201ENST00000333213 1944 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL6A6A6NMZ7 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL6A6A6NMZ7 BICDL2-203ENST00000572449 1984 ntAPPRIS P1 TSL 5 BASIC20.17■□□□□ 0.82
COL6A6A6NMZ7 MAL-201ENST00000309988 1112 ntAPPRIS P1 TSL 1 (best) BASIC20.17■□□□□ 0.82
COL6A6A6NMZ7 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC20.17■□□□□ 0.82
COL6A6A6NMZ7 KRT18P29-201ENST00000397031 1267 ntBASIC20.16■□□□□ 0.82
COL6A6A6NMZ7 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC20.16■□□□□ 0.82
COL6A6A6NMZ7 SGO1-AS1-202ENST00000448208 819 ntTSL 3 BASIC20.16■□□□□ 0.82
COL6A6A6NMZ7 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC20.16■□□□□ 0.82
COL6A6A6NMZ7 SMUG1P1-201ENST00000590640 811 ntBASIC20.16■□□□□ 0.82
COL6A6A6NMZ7 CDH24-206ENST00000610348 2037 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
COL6A6A6NMZ7 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC20.16■□□□□ 0.82
COL6A6A6NMZ7 AC007322.1-201ENST00000426983 750 ntBASIC20.16■□□□□ 0.82
COL6A6A6NMZ7 BX890604.1-207ENST00000486571 904 ntTSL 5 BASIC20.16■□□□□ 0.82
COL6A6A6NMZ7 RNA5SP413-201ENST00000516373 109 ntBASIC20.16■□□□□ 0.82
COL6A6A6NMZ7 SNAP23-210ENST00000564153 775 ntTSL 2 BASIC20.16■□□□□ 0.82
COL6A6A6NMZ7 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC20.16■□□□□ 0.82
COL6A6A6NMZ7 RARA-203ENST00000394086 2008 ntTSL 2 BASIC20.16■□□□□ 0.82
COL6A6A6NMZ7 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL6A6A6NMZ7 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
COL6A6A6NMZ7 AC027451.1-201ENST00000530667 553 ntTSL 4 BASIC20.15■□□□□ 0.82
COL6A6A6NMZ7 AC093762.3-201ENST00000641918 318 ntAPPRIS P1 BASIC20.15■□□□□ 0.82
COL6A6A6NMZ7 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC20.15■□□□□ 0.82
COL6A6A6NMZ7 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC20.15■□□□□ 0.82
COL6A6A6NMZ7 PNLIPRP2-204ENST00000591655 1456 ntAPPRIS ALT1 TSL 5 BASIC20.15■□□□□ 0.82
COL6A6A6NMZ7 COL13A1-203ENST00000398969 2267 ntAPPRIS ALT2 TSL 5 BASIC20.15■□□□□ 0.82
COL6A6A6NMZ7 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
COL6A6A6NMZ7 PHPT1-201ENST00000247665 890 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
COL6A6A6NMZ7 COA6-202ENST00000366613 641 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
COL6A6A6NMZ7 RAMP1-203ENST00000404910 857 ntTSL 2 BASIC20.15■□□□□ 0.82
COL6A6A6NMZ7 AC005181.1-201ENST00000604782 1256 ntBASIC20.15■□□□□ 0.82
COL6A6A6NMZ7 BIN1-204ENST00000348750 2074 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
COL6A6A6NMZ7 ARHGAP29-202ENST00000370217 2043 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
COL6A6A6NMZ7 DRAM2-211ENST00000539140 1883 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.82
COL6A6A6NMZ7 WIPI2-204ENST00000404704 1663 ntTSL 5 BASIC20.14■□□□□ 0.82
COL6A6A6NMZ7 ANKRD11-217ENST00000613312 1584 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.82
COL6A6A6NMZ7 SRP68-202ENST00000539137 2386 ntTSL 2 BASIC20.14■□□□□ 0.82
COL6A6A6NMZ7 TMEM202-AS1-202ENST00000565181 2325 ntBASIC20.14■□□□□ 0.82
COL6A6A6NMZ7 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL6A6A6NMZ7 DNPH1-202ENST00000393987 796 ntTSL 2 BASIC20.14■□□□□ 0.81
COL6A6A6NMZ7 BCL3-201ENST00000164227 2038 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL6A6A6NMZ7 RASSF5-204ENST00000580449 1932 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
COL6A6A6NMZ7 YWHAH-202ENST00000397492 1879 ntTSL 3 BASIC20.14■□□□□ 0.81
COL6A6A6NMZ7 SLC10A4-201ENST00000273861 1790 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL6A6A6NMZ7 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL6A6A6NMZ7 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC20.14■□□□□ 0.81
COL6A6A6NMZ7 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC20.14■□□□□ 0.81
COL6A6A6NMZ7 RASL12-202ENST00000421977 1523 ntTSL 2 BASIC20.14■□□□□ 0.81
COL6A6A6NMZ7 TMEM55B-201ENST00000250489 1961 ntAPPRIS P3 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL6A6A6NMZ7 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
COL6A6A6NMZ7 UBE2J2-203ENST00000360466 1047 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
COL6A6A6NMZ7 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC20.14■□□□□ 0.81
COL6A6A6NMZ7 AL845552.2-201ENST00000553301 553 ntTSL 4 BASIC20.14■□□□□ 0.81
COL6A6A6NMZ7 AL117348.2-201ENST00000432920 1625 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
COL6A6A6NMZ7 MRPL12-201ENST00000333676 1028 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
COL6A6A6NMZ7 LINC01117-201ENST00000443670 699 ntTSL 5 BASIC20.13■□□□□ 0.81
COL6A6A6NMZ7 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC20.13■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 16.4 ms