Protein–RNA interactions for Protein: A6NMK7

CPSF4L, Putative cleavage and polyadenylation specificity factor subunit 4-like protein, humanhuman

Known RBP Predictions only

Length 179 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4LA6NMK7 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC20.39■□□□□ 0.85
CPSF4LA6NMK7 PAXBP1-201ENST00000290178 2564 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CPSF4LA6NMK7 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC20.39■□□□□ 0.85
CPSF4LA6NMK7 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CPSF4LA6NMK7 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CPSF4LA6NMK7 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC20.39■□□□□ 0.85
CPSF4LA6NMK7 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC20.39■□□□□ 0.85
CPSF4LA6NMK7 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC20.38■□□□□ 0.85
CPSF4LA6NMK7 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CPSF4LA6NMK7 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CPSF4LA6NMK7 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CPSF4LA6NMK7 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CPSF4LA6NMK7 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC20.38■□□□□ 0.85
CPSF4LA6NMK7 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC20.38■□□□□ 0.85
CPSF4LA6NMK7 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC20.38■□□□□ 0.85
CPSF4LA6NMK7 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CPSF4LA6NMK7 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC20.38■□□□□ 0.85
CPSF4LA6NMK7 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC20.38■□□□□ 0.85
CPSF4LA6NMK7 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CPSF4LA6NMK7 AC242852.2-201ENST00000615738 1807 ntBASIC20.38■□□□□ 0.85
CPSF4LA6NMK7 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC20.38■□□□□ 0.85
CPSF4LA6NMK7 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC20.38■□□□□ 0.85
CPSF4LA6NMK7 STIM2-204ENST00000467087 5154 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
CPSF4LA6NMK7 CBWD1-203ENST00000377400 1792 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CPSF4LA6NMK7 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC20.37■□□□□ 0.85
CPSF4LA6NMK7 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC20.37■□□□□ 0.85
CPSF4LA6NMK7 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CPSF4LA6NMK7 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC20.37■□□□□ 0.85
CPSF4LA6NMK7 CLTA-206ENST00000466396 695 ntTSL 2 BASIC20.37■□□□□ 0.85
CPSF4LA6NMK7 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC20.37■□□□□ 0.85
CPSF4LA6NMK7 C7orf25-203ENST00000431882 1645 ntTSL 2 BASIC20.37■□□□□ 0.85
CPSF4LA6NMK7 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC20.37■□□□□ 0.85
CPSF4LA6NMK7 AC073188.6-202ENST00000616616 2281 ntTSL 1 (best) BASIC20.37■□□□□ 0.85
CPSF4LA6NMK7 IRX2-202ENST00000382611 2630 ntAPPRIS P1 TSL 1 (best) BASIC20.37■□□□□ 0.85
CPSF4LA6NMK7 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC20.37■□□□□ 0.85
CPSF4LA6NMK7 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CPSF4LA6NMK7 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CPSF4LA6NMK7 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CPSF4LA6NMK7 NELFCD-213ENST00000602795 2305 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CPSF4LA6NMK7 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CPSF4LA6NMK7 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC20.36■□□□□ 0.85
CPSF4LA6NMK7 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC20.36■□□□□ 0.85
CPSF4LA6NMK7 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC20.36■□□□□ 0.85
CPSF4LA6NMK7 KRT125P-201ENST00000546827 989 ntBASIC20.36■□□□□ 0.85
CPSF4LA6NMK7 TMEM170A-202ENST00000561878 1072 ntAPPRIS P1 TSL 1 (best) BASIC20.36■□□□□ 0.85
CPSF4LA6NMK7 AC127496.7-201ENST00000625110 1798 ntBASIC20.36■□□□□ 0.85
CPSF4LA6NMK7 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CPSF4LA6NMK7 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
CPSF4LA6NMK7 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
CPSF4LA6NMK7 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC20.35■□□□□ 0.85
CPSF4LA6NMK7 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC20.35■□□□□ 0.85
CPSF4LA6NMK7 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC20.35■□□□□ 0.85
CPSF4LA6NMK7 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CPSF4LA6NMK7 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC20.35■□□□□ 0.85
CPSF4LA6NMK7 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CPSF4LA6NMK7 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CPSF4LA6NMK7 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC20.35■□□□□ 0.85
CPSF4LA6NMK7 AC092028.1-203ENST00000608262 953 ntBASIC20.35■□□□□ 0.85
CPSF4LA6NMK7 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC20.35■□□□□ 0.85
CPSF4LA6NMK7 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CPSF4LA6NMK7 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC20.35■□□□□ 0.85
CPSF4LA6NMK7 LINC01529-204ENST00000636474 1715 ntBASIC20.35■□□□□ 0.85
CPSF4LA6NMK7 PIP5KL1-202ENST00000388747 2198 ntAPPRIS P1 TSL 5 BASIC20.35■□□□□ 0.85
CPSF4LA6NMK7 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC20.35■□□□□ 0.85
CPSF4LA6NMK7 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC20.35■□□□□ 0.85
CPSF4LA6NMK7 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC20.35■□□□□ 0.85
CPSF4LA6NMK7 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC20.35■□□□□ 0.85
CPSF4LA6NMK7 SNRNP70-201ENST00000221448 1603 ntTSL 2 BASIC20.35■□□□□ 0.85
CPSF4LA6NMK7 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC20.34■□□□□ 0.85
CPSF4LA6NMK7 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CPSF4LA6NMK7 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC20.34■□□□□ 0.85
CPSF4LA6NMK7 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC20.34■□□□□ 0.85
CPSF4LA6NMK7 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CPSF4LA6NMK7 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CPSF4LA6NMK7 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC20.34■□□□□ 0.85
CPSF4LA6NMK7 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CPSF4LA6NMK7 DISC1-223ENST00000628350 2363 ntAPPRIS ALT2 TSL 1 (best) BASIC20.34■□□□□ 0.85
CPSF4LA6NMK7 PLPP5-209ENST00000529359 2185 ntTSL 1 (best) BASIC20.34■□□□□ 0.85
CPSF4LA6NMK7 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC20.34■□□□□ 0.85
CPSF4LA6NMK7 STEAP2-204ENST00000394626 2456 ntTSL 2 BASIC20.33■□□□□ 0.85
CPSF4LA6NMK7 BIN1-209ENST00000393040 2293 ntAPPRIS ALT2 TSL 1 (best) BASIC20.33■□□□□ 0.85
CPSF4LA6NMK7 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC20.33■□□□□ 0.85
CPSF4LA6NMK7 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC20.33■□□□□ 0.85
CPSF4LA6NMK7 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CPSF4LA6NMK7 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC20.33■□□□□ 0.85
CPSF4LA6NMK7 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC20.33■□□□□ 0.85
CPSF4LA6NMK7 ASB1-202ENST00000409297 878 ntTSL 5 BASIC20.33■□□□□ 0.85
CPSF4LA6NMK7 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC20.33■□□□□ 0.85
CPSF4LA6NMK7 RARRES2P1-201ENST00000474487 481 ntBASIC20.33■□□□□ 0.85
CPSF4LA6NMK7 C12orf75-207ENST00000552457 689 ntTSL 5 BASIC20.33■□□□□ 0.85
CPSF4LA6NMK7 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.85
CPSF4LA6NMK7 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC20.33■□□□□ 0.85
CPSF4LA6NMK7 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC20.33■□□□□ 0.84
CPSF4LA6NMK7 SPATA2L-201ENST00000289805 2335 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CPSF4LA6NMK7 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC20.33■□□□□ 0.84
CPSF4LA6NMK7 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC20.33■□□□□ 0.84
CPSF4LA6NMK7 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC20.33■□□□□ 0.84
CPSF4LA6NMK7 CLDN5-201ENST00000403084 2357 ntBASIC20.32■□□□□ 0.84
CPSF4LA6NMK7 LMLN-210ENST00000482695 2010 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
CPSF4LA6NMK7 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC20.32■□□□□ 0.84
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms