Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 ZFYVE9-201ENST00000287727 5194 ntAPPRIS P4 TSL 5 BASIC17.35■□□□□ 0.37
TRAV1-1A0A0B4J248 TBL1Y-201ENST00000346432 2312 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV1-1A0A0B4J248 ING2-201ENST00000302327 1189 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV1-1A0A0B4J248 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC17.35■□□□□ 0.37
TRAV1-1A0A0B4J248 RP9P-202ENST00000450133 1212 ntBASIC17.35■□□□□ 0.37
TRAV1-1A0A0B4J248 SSSCA1-AS1-201ENST00000567594 614 ntBASIC17.35■□□□□ 0.37
TRAV1-1A0A0B4J248 TBX2-AS1-202ENST00000589814 539 ntTSL 3 BASIC17.35■□□□□ 0.37
TRAV1-1A0A0B4J248 AC073111.5-206ENST00000642087 859 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
TRAV1-1A0A0B4J248 MED25-211ENST00000617849 1548 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV1-1A0A0B4J248 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC17.35■□□□□ 0.37
TRAV1-1A0A0B4J248 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC17.35■□□□□ 0.37
TRAV1-1A0A0B4J248 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC17.35■□□□□ 0.37
TRAV1-1A0A0B4J248 SH2B2-202ENST00000536178 2113 ntAPPRIS P1 TSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV1-1A0A0B4J248 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC17.35■□□□□ 0.37
TRAV1-1A0A0B4J248 NTNG2-202ENST00000393229 4792 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRAV1-1A0A0B4J248 TUBA1A-201ENST00000295766 1887 ntAPPRIS P1 TSL 2 BASIC17.34■□□□□ 0.37
TRAV1-1A0A0B4J248 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRAV1-1A0A0B4J248 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TRAV1-1A0A0B4J248 ENTPD6-203ENST00000376652 2750 ntAPPRIS P3 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRAV1-1A0A0B4J248 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TRAV1-1A0A0B4J248 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC17.34■□□□□ 0.37
TRAV1-1A0A0B4J248 AC004080.1-201ENST00000523608 757 ntTSL 2 BASIC17.34■□□□□ 0.37
TRAV1-1A0A0B4J248 TMC7-205ENST00000569532 2738 ntTSL 2 BASIC17.34■□□□□ 0.37
TRAV1-1A0A0B4J248 CAV2-201ENST00000222693 3301 ntAPPRIS P1 TSL 1 (best) BASIC17.34■□□□□ 0.37
TRAV1-1A0A0B4J248 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC17.34■□□□□ 0.37
TRAV1-1A0A0B4J248 SLC1A6-203ENST00000544886 2420 ntTSL 1 (best) BASIC17.33■□□□□ 0.37
TRAV1-1A0A0B4J248 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRAV1-1A0A0B4J248 AL353803.4-201ENST00000565882 1934 ntBASIC17.33■□□□□ 0.37
TRAV1-1A0A0B4J248 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC17.33■□□□□ 0.37
TRAV1-1A0A0B4J248 LRP5-201ENST00000294304 5159 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRAV1-1A0A0B4J248 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC17.33■□□□□ 0.37
TRAV1-1A0A0B4J248 ZFYVE19-201ENST00000299173 1555 ntAPPRIS ALT2 TSL 1 (best) BASIC17.33■□□□□ 0.37
TRAV1-1A0A0B4J248 ANGPTL6-203ENST00000589181 1579 ntTSL 5 BASIC17.33■□□□□ 0.37
TRAV1-1A0A0B4J248 REST-210ENST00000638187 1334 ntTSL 5 BASIC17.33■□□□□ 0.36
TRAV1-1A0A0B4J248 TAF10-201ENST00000299424 1215 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRAV1-1A0A0B4J248 LSM14B-204ENST00000370915 1079 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TRAV1-1A0A0B4J248 RPARP-AS1-205ENST00000596045 431 ntTSL 3 BASIC17.33■□□□□ 0.36
TRAV1-1A0A0B4J248 SAP30L-201ENST00000297109 6226 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRAV1-1A0A0B4J248 EDC4-201ENST00000358933 4800 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRAV1-1A0A0B4J248 ANKRD19P-205ENST00000473204 2370 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TRAV1-1A0A0B4J248 HRK-201ENST00000257572 5789 ntAPPRIS P1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRAV1-1A0A0B4J248 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TRAV1-1A0A0B4J248 TTYH1-201ENST00000301194 2088 ntAPPRIS ALT1 TSL 1 (best) BASIC17.33■□□□□ 0.36
TRAV1-1A0A0B4J248 MAP3K3-201ENST00000361357 4818 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TRAV1-1A0A0B4J248 MMEL1-206ENST00000502556 1943 ntTSL 1 (best) BASIC17.33■□□□□ 0.36
TRAV1-1A0A0B4J248 SMURF1-201ENST00000361125 5737 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV1-1A0A0B4J248 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV1-1A0A0B4J248 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV1-1A0A0B4J248 ZDHHC3-203ENST00000342790 1336 ntTSL 5 BASIC17.32■□□□□ 0.36
TRAV1-1A0A0B4J248 AC084757.3-201ENST00000558061 1943 ntTSL 3 BASIC17.32■□□□□ 0.36
TRAV1-1A0A0B4J248 GADD45G-201ENST00000252506 1065 ntAPPRIS P1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV1-1A0A0B4J248 REPIN1-204ENST00000466559 1022 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV1-1A0A0B4J248 SPTBN4-203ENST00000392023 2419 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV1-1A0A0B4J248 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC17.32■□□□□ 0.36
TRAV1-1A0A0B4J248 LINC00092-201ENST00000412122 1726 ntTSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV1-1A0A0B4J248 KCNQ1-202ENST00000335475 2159 ntAPPRIS ALT2 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV1-1A0A0B4J248 MYO1C-203ENST00000438665 4898 ntAPPRIS ALT1 TSL 5 BASIC17.32■□□□□ 0.36
TRAV1-1A0A0B4J248 SLC46A3-202ENST00000380814 2121 ntAPPRIS ALT1 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV1-1A0A0B4J248 NRG2-204ENST00000358522 2559 ntAPPRIS P5 TSL 1 (best) BASIC17.32■□□□□ 0.36
TRAV1-1A0A0B4J248 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC17.31■□□□□ 0.36
TRAV1-1A0A0B4J248 LINC01011-201ENST00000445000 2811 ntTSL 2 BASIC17.31■□□□□ 0.36
TRAV1-1A0A0B4J248 TRADD-202ENST00000486556 1833 ntTSL 2 BASIC17.31■□□□□ 0.36
TRAV1-1A0A0B4J248 CIZ1-206ENST00000372954 2731 ntAPPRIS ALT2 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV1-1A0A0B4J248 ECE2-203ENST00000359140 3147 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV1-1A0A0B4J248 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV1-1A0A0B4J248 WBP1-202ENST00000393972 1325 ntTSL 2 BASIC17.31■□□□□ 0.36
TRAV1-1A0A0B4J248 MTMR9LP-204ENST00000441044 2624 ntTSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV1-1A0A0B4J248 MCCD1-201ENST00000376191 955 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV1-1A0A0B4J248 KLHL21-203ENST00000463043 667 ntTSL 5 BASIC17.31■□□□□ 0.36
TRAV1-1A0A0B4J248 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC17.31■□□□□ 0.36
TRAV1-1A0A0B4J248 TARBP2-201ENST00000266987 1867 ntAPPRIS P1 TSL 1 (best) BASIC17.31■□□□□ 0.36
TRAV1-1A0A0B4J248 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC17.31■□□□□ 0.36
TRAV1-1A0A0B4J248 BCAM-201ENST00000270233 2402 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV1-1A0A0B4J248 DOK3-202ENST00000357198 1729 ntTSL 2 BASIC17.3■□□□□ 0.36
TRAV1-1A0A0B4J248 TMEM129-201ENST00000303277 2678 ntTSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV1-1A0A0B4J248 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC17.3■□□□□ 0.36
TRAV1-1A0A0B4J248 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV1-1A0A0B4J248 STK32C-205ENST00000456004 607 ntTSL 2 BASIC17.3■□□□□ 0.36
TRAV1-1A0A0B4J248 AC093536.1-201ENST00000569153 554 ntBASIC17.3■□□□□ 0.36
TRAV1-1A0A0B4J248 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC17.3■□□□□ 0.36
TRAV1-1A0A0B4J248 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC17.3■□□□□ 0.36
TRAV1-1A0A0B4J248 PGRMC2-201ENST00000296425 2767 ntAPPRIS P1 TSL 1 (best) BASIC17.3■□□□□ 0.36
TRAV1-1A0A0B4J248 SOX3-201ENST00000370536 2132 ntAPPRIS P1 BASIC17.3■□□□□ 0.36
TRAV1-1A0A0B4J248 SERPINF2-201ENST00000324015 2284 ntAPPRIS P1 TSL 5 BASIC17.3■□□□□ 0.36
TRAV1-1A0A0B4J248 MMP24-201ENST00000246186 4414 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRAV1-1A0A0B4J248 C19orf12-204ENST00000392276 1912 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TRAV1-1A0A0B4J248 MDFI-203ENST00000373051 1622 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
TRAV1-1A0A0B4J248 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC17.29■□□□□ 0.36
TRAV1-1A0A0B4J248 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRAV1-1A0A0B4J248 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TRAV1-1A0A0B4J248 GOLGA2P6-201ENST00000340929 2049 ntBASIC17.29■□□□□ 0.36
TRAV1-1A0A0B4J248 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC17.29■□□□□ 0.36
TRAV1-1A0A0B4J248 WEE1-202ENST00000450114 2799 ntAPPRIS P1 TSL 1 (best) BASIC17.29■□□□□ 0.36
TRAV1-1A0A0B4J248 AL157384.1-201ENST00000445995 2473 ntBASIC17.29■□□□□ 0.36
TRAV1-1A0A0B4J248 DUSP22-201ENST00000344450 1485 ntTSL 1 (best) BASIC17.29■□□□□ 0.36
TRAV1-1A0A0B4J248 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC17.29■□□□□ 0.36
TRAV1-1A0A0B4J248 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC17.28■□□□□ 0.36
TRAV1-1A0A0B4J248 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC17.28■□□□□ 0.36
TRAV1-1A0A0B4J248 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC17.28■□□□□ 0.36
TRAV1-1A0A0B4J248 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC17.28■□□□□ 0.36
Retrieved 100 of 98,524 protein–RNA pairs in 15.3 ms