Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 PCID2-205ENST00000375477 1654 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 CUL4A-203ENST00000375441 4037 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 TNFAIP3-206ENST00000612899 4735 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 VHL-201ENST00000256474 3737 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 DCAF4-203ENST00000394234 2360 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 GHET1-201ENST00000627071 1906 ntBASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 AMT-239ENST00000636865 1914 ntTSL 5 BASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 TRIB1-201ENST00000311922 3635 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 HERC5-201ENST00000264350 3513 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 SYBU-217ENST00000528331 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 GOLGA6L4-203ENST00000510439 4563 ntAPPRIS P2 TSL 5 BASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 PTPN6-202ENST00000399448 2159 ntAPPRIS P3 TSL 1 (best) BASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 SLC6A6-204ENST00000613060 6526 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 LINC02405-201ENST00000512624 1361 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 LAMA4-207ENST00000424408 5983 ntAPPRIS P3 TSL 5 BASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 YPEL4-201ENST00000300022 1721 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 CPT1C-202ENST00000323446 2783 ntAPPRIS P3 TSL 1 (best) BASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 NRM-202ENST00000376420 1228 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 LY86-202ENST00000379953 1197 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 MPP6-202ENST00000396475 3848 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 AL592076.1-201ENST00000424448 303 ntBASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 TREX1-202ENST00000444177 1200 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 AC005234.1-201ENST00000457851 434 ntTSL 3 BASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 AC130709.1-201ENST00000484779 1212 ntBASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 APOPT1-209ENST00000492189 513 ntTSL 3 BASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 ADIG-204ENST00000537425 770 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 MRPL51-202ENST00000537701 601 ntTSL 2 BASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 SLC25A21-203ENST00000555449 1023 ntAPPRIS ALT1 TSL 2 BASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 C14orf132-204ENST00000556728 774 ntAPPRIS P1 TSL 2 BASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 SHBG-207ENST00000570547 801 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 TTC28-AS1_3.1-201ENST00000615579 181 ntBASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 AC133540.1-201ENST00000620845 1019 ntBASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 AC073592.2-201ENST00000623062 780 ntBASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 AC092299.1-201ENST00000632679 757 ntBASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 AC068587.8-201ENST00000641239 219 ntBASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 FMO6P-201ENST00000236166 1620 ntBASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 KCNV1-202ENST00000524391 6979 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 IFT81-202ENST00000361948 3048 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 KLC2-206ENST00000417856 3015 ntAPPRIS P1 TSL 5 BASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 ZNF384-201ENST00000319770 3266 ntTSL 2 BASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 CAMKV-215ENST00000488336 2905 ntTSL 2 BASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 AC237221.1-201ENST00000561575 1881 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 LINC00339-208ENST00000634934 1518 ntTSL 5 BASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 SLC36A4-201ENST00000326402 6012 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 NMNAT2-201ENST00000287713 5663 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 ZNF493-208ENST00000599461 1769 ntBASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 Z98885.3-201ENST00000624882 1757 ntBASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 ARHGAP12-203ENST00000375245 4958 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 CNTD1-204ENST00000588408 2369 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 BARD1-201ENST00000260947 5499 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 TIAM1-206ENST00000541036 7018 ntTSL 5 BASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 KIF17-202ENST00000375044 3572 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 SLC16A2-201ENST00000587091 4161 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 PSMG2-201ENST00000317615 1686 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 AC144522.1-201ENST00000625111 1658 ntBASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 XRCC6-202ENST00000360079 2296 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 TMEM106A-202ENST00000541594 1330 ntTSL 2 BASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 DDR1-225ENST00000376568 3894 ntAPPRIS ALT2 TSL 1 (best) BASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC11.33□□□□□ -0.6
PDLIM3Q53GG5 PEX5L-208ENST00000467460 9082 ntAPPRIS P3 TSL 1 (best) BASIC11.32□□□□□ -0.6
PDLIM3Q53GG5 TMEM192-203ENST00000506087 2225 ntTSL 2 BASIC11.32□□□□□ -0.6
PDLIM3Q53GG5 MED16-202ENST00000312090 3229 ntAPPRIS ALT2 TSL 1 (best) BASIC11.32□□□□□ -0.6
PDLIM3Q53GG5 GJB1-201ENST00000361726 1637 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
PDLIM3Q53GG5 PPP3CA-202ENST00000394853 3604 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
PDLIM3Q53GG5 PGAM1P5-202ENST00000552554 2148 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
PDLIM3Q53GG5 GFI1B-207ENST00000636137 1870 ntTSL 5 BASIC11.32□□□□□ -0.6
PDLIM3Q53GG5 HDAC7-209ENST00000427332 3016 ntAPPRIS ALT2 TSL 5 BASIC11.32□□□□□ -0.6
PDLIM3Q53GG5 SLC39A11-202ENST00000542342 2752 ntAPPRIS ALT1 TSL 2 BASIC11.32□□□□□ -0.6
PDLIM3Q53GG5 RNF24-201ENST00000336095 7453 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
PDLIM3Q53GG5 AC015818.9-201ENST00000591705 4582 ntBASIC11.32□□□□□ -0.6
PDLIM3Q53GG5 EPB41L1-212ENST00000441639 5967 ntTSL 5 BASIC11.32□□□□□ -0.6
PDLIM3Q53GG5 AEBP1-201ENST00000223357 4081 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
PDLIM3Q53GG5 ACTR2-202ENST00000377982 2685 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
PDLIM3Q53GG5 NSD2-203ENST00000382888 2666 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
PDLIM3Q53GG5 BAK1P1-201ENST00000317045 636 ntBASIC11.32□□□□□ -0.6
PDLIM3Q53GG5 JTB-202ENST00000356648 1040 ntTSL 2 BASIC11.32□□□□□ -0.6
PDLIM3Q53GG5 MANEA-202ENST00000369293 1076 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
PDLIM3Q53GG5 Z69890.1-201ENST00000382990 339 ntBASIC11.32□□□□□ -0.6
PDLIM3Q53GG5 TP53I3-203ENST00000407482 747 ntTSL 1 (best) BASIC11.32□□□□□ -0.6
PDLIM3Q53GG5 KRT18P36-201ENST00000411618 1276 ntBASIC11.32□□□□□ -0.6
PDLIM3Q53GG5 AL606489.1-201ENST00000443515 486 ntTSL 3 BASIC11.32□□□□□ -0.6
PDLIM3Q53GG5 RPP40-203ENST00000464646 1042 ntTSL 5 BASIC11.32□□□□□ -0.6
PDLIM3Q53GG5 AC006122.1-201ENST00000493323 440 ntBASIC11.32□□□□□ -0.6
PDLIM3Q53GG5 NME1-NME2-203ENST00000555572 1193 ntAPPRIS ALT2 TSL 2 BASIC11.32□□□□□ -0.6
PDLIM3Q53GG5 MAX-218ENST00000557746 571 ntTSL 4 BASIC11.32□□□□□ -0.6
PDLIM3Q53GG5 ERVK13-1-204ENST00000566343 567 ntTSL 4 BASIC11.32□□□□□ -0.6
PDLIM3Q53GG5 AC005696.1-201ENST00000572876 443 ntTSL 2 BASIC11.32□□□□□ -0.6
PDLIM3Q53GG5 MIR4783-201ENST00000580343 82 ntBASIC11.32□□□□□ -0.6
PDLIM3Q53GG5 NAT9-211ENST00000580632 799 ntTSL 3 BASIC11.32□□□□□ -0.6
PDLIM3Q53GG5 AC090164.2-201ENST00000611487 516 ntBASIC11.32□□□□□ -0.6
PDLIM3Q53GG5 AC105137.3-201ENST00000617588 984 ntBASIC11.32□□□□□ -0.6
PDLIM3Q53GG5 DDX5-235ENST00000630471 473 ntTSL 4 BASIC11.32□□□□□ -0.6
PDLIM3Q53GG5 PRAME-205ENST00000405655 2179 ntAPPRIS P2 TSL 1 (best) BASIC11.32□□□□□ -0.6
PDLIM3Q53GG5 GLIS3-202ENST00000381971 3961 ntAPPRIS P1 TSL 5 BASIC11.32□□□□□ -0.6
PDLIM3Q53GG5 TMEM41A-203ENST00000421852 2827 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
PDLIM3Q53GG5 AC105345.1-202ENST00000382488 3204 ntTSL 2 BASIC11.32□□□□□ -0.6
PDLIM3Q53GG5 KDM5B-203ENST00000367265 10345 ntAPPRIS P1 TSL 1 (best) BASIC11.32□□□□□ -0.6
Retrieved 100 of 98,524 protein–RNA pairs in 73.8 ms