Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 PTPN20-226ENST00000513156 913 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
COL6A3P12111 PTPN20-228ENST00000513266 818 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
COL6A3P12111 GFRA2-203ENST00000517892 1176 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
COL6A3P12111 BCAR1P2-201ENST00000557707 636 ntBASIC13.27□□□□□ -0.29
COL6A3P12111 AC004134.1-201ENST00000587835 225 ntBASIC13.27□□□□□ -0.29
COL6A3P12111 CISTR-202ENST00000626733 464 ntTSL 3 BASIC13.27□□□□□ -0.29
COL6A3P12111 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
COL6A3P12111 PRAMEF28P-201ENST00000610289 1450 ntBASIC13.27□□□□□ -0.29
COL6A3P12111 CSF3-204ENST00000394149 1583 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
COL6A3P12111 OSER1-AS1-202ENST00000437730 1563 ntTSL 5 BASIC13.27□□□□□ -0.29
COL6A3P12111 GAS2L2-202ENST00000604641 3014 ntAPPRIS P2 TSL 1 (best) BASIC13.27□□□□□ -0.29
COL6A3P12111 VRK3-205ENST00000593919 1979 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
COL6A3P12111 ZNF621-204ENST00000431278 2613 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
COL6A3P12111 TBRG4-215ENST00000494076 2190 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.29
COL6A3P12111 IGF2BP2-202ENST00000382199 3688 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL6A3P12111 LMNB2-201ENST00000325327 4671 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL6A3P12111 VN2R9P-201ENST00000431428 953 ntBASIC13.26□□□□□ -0.29
COL6A3P12111 VAMP7-203ENST00000460621 658 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
COL6A3P12111 MIR4418-201ENST00000581169 62 ntBASIC13.26□□□□□ -0.29
COL6A3P12111 LINC02348-201ENST00000618724 489 ntTSL 4 BASIC13.26□□□□□ -0.29
COL6A3P12111 ZDHHC11-201ENST00000283441 2604 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL6A3P12111 AL137784.3-201ENST00000623858 2288 ntBASIC13.26□□□□□ -0.29
COL6A3P12111 SPIRE1-202ENST00000409402 5665 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL6A3P12111 OVCH2-203ENST00000612000 1730 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
COL6A3P12111 KITLG-202ENST00000347404 1948 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
COL6A3P12111 MUTYH-210ENST00000450313 1929 ntTSL 5 BASIC13.26□□□□□ -0.29
COL6A3P12111 CYLD-214ENST00000569418 3513 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL6A3P12111 SNX19-211ENST00000533214 3096 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
COL6A3P12111 FKBP9P1-201ENST00000441699 1491 ntBASIC13.26□□□□□ -0.29
COL6A3P12111 AC017104.3-201ENST00000370380 568 ntTSL 4 BASIC13.26□□□□□ -0.29
COL6A3P12111 ANKRD61-201ENST00000409061 1257 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
COL6A3P12111 SDR42E1P5-201ENST00000430344 866 ntBASIC13.26□□□□□ -0.29
COL6A3P12111 FCGR2C-202ENST00000466542 1070 ntAPPRIS P5 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL6A3P12111 FKBP1AP2-201ENST00000560953 283 ntBASIC13.26□□□□□ -0.29
COL6A3P12111 IL20RA-203ENST00000367748 3522 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
COL6A3P12111 SLC13A5-203ENST00000433363 3435 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL6A3P12111 SLC39A1-201ENST00000310483 2427 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL6A3P12111 SLC25A32-201ENST00000297578 2891 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL6A3P12111 RDX-201ENST00000343115 4491 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL6A3P12111 PRKAR2A-202ENST00000296446 3318 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
COL6A3P12111 PADI6-201ENST00000619609 2396 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL6A3P12111 ZNF423-206ENST00000563137 4911 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
COL6A3P12111 EEF1GP4-201ENST00000467631 1307 ntBASIC13.26□□□□□ -0.29
COL6A3P12111 SHOC2-202ENST00000369452 3943 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL6A3P12111 OTX1-201ENST00000282549 2861 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL6A3P12111 OTX1-202ENST00000366671 2861 ntAPPRIS P1 TSL 3 BASIC13.26□□□□□ -0.29
COL6A3P12111 C1orf109-201ENST00000358011 2355 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
COL6A3P12111 ILK-201ENST00000299421 1802 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
COL6A3P12111 PARK7-204ENST00000377493 795 ntTSL 2 BASIC13.26□□□□□ -0.29
COL6A3P12111 USP41-202ENST00000454608 1077 ntAPPRIS P5 TSL 5 BASIC13.26□□□□□ -0.29
COL6A3P12111 AF241726.2-201ENST00000465127 954 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
COL6A3P12111 AC018552.4-201ENST00000563251 556 ntTSL 4 BASIC13.26□□□□□ -0.29
COL6A3P12111 C17orf62-210ENST00000577732 1053 ntAPPRIS P1 TSL 2 BASIC13.26□□□□□ -0.29
COL6A3P12111 AC008655.1-201ENST00000595563 457 ntTSL 3 BASIC13.26□□□□□ -0.29
COL6A3P12111 AL627230.8-201ENST00000613335 202 ntBASIC13.26□□□□□ -0.29
COL6A3P12111 DCUN1D3-202ENST00000563934 1996 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
COL6A3P12111 KRBOX4-202ENST00000344302 2774 ntAPPRIS ALT2 TSL 2 BASIC13.26□□□□□ -0.29
COL6A3P12111 CCDC181-202ENST00000367806 1860 ntAPPRIS ALT1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL6A3P12111 PAQR6-204ENST00000356983 2143 ntAPPRIS ALT1 TSL 2 BASIC13.25□□□□□ -0.29
COL6A3P12111 TNNT2-224ENST00000509001 1330 ntAPPRIS P4 TSL 5 BASIC13.25□□□□□ -0.29
COL6A3P12111 AL034548.1-201ENST00000608495 1672 ntBASIC13.25□□□□□ -0.29
COL6A3P12111 HSPA6-201ENST00000309758 2371 ntAPPRIS P1 BASIC13.25□□□□□ -0.29
COL6A3P12111 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
COL6A3P12111 DLGAP1-214ENST00000539435 2402 ntTSL 2 BASIC13.25□□□□□ -0.29
COL6A3P12111 KLHL13-207ENST00000540167 3396 ntTSL 2 BASIC13.25□□□□□ -0.29
COL6A3P12111 CDH16-202ENST00000394055 2821 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
COL6A3P12111 CHTF18-201ENST00000262315 3090 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL6A3P12111 ATP6V1B1-201ENST00000234396 1891 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL6A3P12111 PRADC1P1-201ENST00000412317 525 ntBASIC13.25□□□□□ -0.29
COL6A3P12111 FANCD2OS-204ENST00000450660 1055 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL6A3P12111 RN7SL824P-201ENST00000470692 297 ntBASIC13.25□□□□□ -0.29
COL6A3P12111 MARCH3-205ENST00000515241 719 ntTSL 2 BASIC13.25□□□□□ -0.29
COL6A3P12111 LYPLA1-213ENST00000522007 250 ntTSL 2 BASIC13.25□□□□□ -0.29
COL6A3P12111 HNRNPCP6-201ENST00000525816 871 ntBASIC13.25□□□□□ -0.29
COL6A3P12111 AC004702.1-201ENST00000580225 195 ntTSL 5 BASIC13.25□□□□□ -0.29
COL6A3P12111 AC022966.1-201ENST00000591685 593 ntBASIC13.25□□□□□ -0.29
COL6A3P12111 RPL17-224ENST00000618619 747 ntAPPRIS P1 TSL 5 BASIC13.25□□□□□ -0.29
COL6A3P12111 FXN-201ENST00000377270 2608 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL6A3P12111 TRIM4-201ENST00000349062 3374 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL6A3P12111 UPB1-201ENST00000326010 2290 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL6A3P12111 DDX59-206ENST00000447706 2900 ntTSL 2 BASIC13.25□□□□□ -0.29
COL6A3P12111 SLC12A4-202ENST00000422611 4670 ntTSL 2 BASIC13.25□□□□□ -0.29
COL6A3P12111 ADAM15-201ENST00000271836 2799 ntAPPRIS ALT2 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL6A3P12111 OSBPL5-202ENST00000348039 2798 ntTSL 2 BASIC13.25□□□□□ -0.29
COL6A3P12111 SLC16A7-216ENST00000552432 2250 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL6A3P12111 RHOU-201ENST00000366691 4372 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
COL6A3P12111 CAP1-205ENST00000372802 2964 ntAPPRIS ALT1 TSL 5 BASIC13.25□□□□□ -0.29
COL6A3P12111 RRN3P3-202ENST00000551766 3366 ntTSL 2 BASIC13.25□□□□□ -0.29
COL6A3P12111 FTLP10-201ENST00000503647 1501 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
COL6A3P12111 AC004906.1-201ENST00000423194 969 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
COL6A3P12111 ZFX-AS1-201ENST00000427551 417 ntTSL 3 BASIC13.25□□□□□ -0.29
COL6A3P12111 TBC1D3P7-201ENST00000428328 914 ntBASIC13.25□□□□□ -0.29
COL6A3P12111 AC139887.2-203ENST00000503185 618 ntTSL 2 BASIC13.25□□□□□ -0.29
COL6A3P12111 SNCA-208ENST00000505199 411 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
COL6A3P12111 TATDN3-207ENST00000526641 1073 ntTSL 2 BASIC13.25□□□□□ -0.29
COL6A3P12111 CTSC-206ENST00000529974 747 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
COL6A3P12111 FP236383.2-201ENST00000625598 923 ntBASIC13.25□□□□□ -0.29
COL6A3P12111 FP236383.3-201ENST00000627981 923 ntBASIC13.25□□□□□ -0.29
COL6A3P12111 FP671120.3-201ENST00000631211 923 ntBASIC13.25□□□□□ -0.29
COL6A3P12111 ENO2-211ENST00000541477 2549 ntAPPRIS P1 TSL 2 BASIC13.25□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 38.3 ms