Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 USMG5-205ENST00000369825 789 ntAPPRIS P1 TSL 5 BASIC15.89■□□□□ 0.13
HMGB1P09429 WFDC5-202ENST00000372789 1018 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HMGB1P09429 AC024028.1-201ENST00000437145 437 ntTSL 3 BASIC15.89■□□□□ 0.13
HMGB1P09429 RPL7P35-201ENST00000446943 740 ntBASIC15.89■□□□□ 0.13
HMGB1P09429 AC082651.1-201ENST00000478468 832 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
HMGB1P09429 C21orf62-204ENST00000490358 1155 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HMGB1P09429 LY6E-208ENST00000520531 490 ntTSL 2 BASIC15.89■□□□□ 0.13
HMGB1P09429 AC226150.1-201ENST00000544259 466 ntBASIC15.89■□□□□ 0.13
HMGB1P09429 DNM1P30-201ENST00000563586 452 ntBASIC15.89■□□□□ 0.13
HMGB1P09429 MIR4687-201ENST00000583618 80 ntBASIC15.89■□□□□ 0.13
HMGB1P09429 HKR1-220ENST00000591259 734 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
HMGB1P09429 AC018755.3-203ENST00000597710 411 ntTSL 3 BASIC15.89■□□□□ 0.13
HMGB1P09429 RNF103-CHMP3-202ENST00000604011 1135 ntAPPRIS P1 TSL 2 BASIC15.89■□□□□ 0.13
HMGB1P09429 Metazoa_SRP.69-201ENST00000615730 281 ntBASIC15.89■□□□□ 0.13
HMGB1P09429 OVOL3-202ENST00000633214 675 ntAPPRIS P2 TSL 5 BASIC15.89■□□□□ 0.13
HMGB1P09429 ATL2-201ENST00000378954 2868 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HMGB1P09429 TRIM21-201ENST00000254436 1924 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HMGB1P09429 DEPTOR-201ENST00000286234 2569 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HMGB1P09429 GRM1-203ENST00000361719 6754 ntAPPRIS P3 TSL 5 BASIC15.89■□□□□ 0.13
HMGB1P09429 GGA3-214ENST00000582717 2255 ntTSL 2 BASIC15.89■□□□□ 0.13
HMGB1P09429 BCAS3-221ENST00000588874 2948 ntAPPRIS ALT2 TSL 2 BASIC15.89■□□□□ 0.13
HMGB1P09429 AC010547.1-201ENST00000500612 2793 ntTSL 2 BASIC15.89■□□□□ 0.13
HMGB1P09429 HEPACAM-201ENST00000298251 3602 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HMGB1P09429 TRIB1-203ENST00000520847 1332 ntTSL 2 BASIC15.89■□□□□ 0.13
HMGB1P09429 ARL1-202ENST00000536227 1322 ntTSL 2 BASIC15.89■□□□□ 0.13
HMGB1P09429 DEDD-202ENST00000368006 2345 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HMGB1P09429 RIMBP2-201ENST00000261655 6321 ntAPPRIS P1 TSL 1 (best) BASIC15.89■□□□□ 0.13
HMGB1P09429 LRRC17-201ENST00000249377 2002 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
HMGB1P09429 NF1-204ENST00000431387 2889 ntTSL 1 (best) BASIC15.89■□□□□ 0.13
HMGB1P09429 TRIM60-201ENST00000341062 1867 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
HMGB1P09429 MAP7D2-202ENST00000379651 3930 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
HMGB1P09429 RC3H2-201ENST00000335387 3081 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
HMGB1P09429 BCL2L1-203ENST00000376062 2578 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HMGB1P09429 RHD-203ENST00000357542 1387 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
HMGB1P09429 UPK1A-203ENST00000616789 1366 ntTSL 5 BASIC15.88■□□□□ 0.13
HMGB1P09429 SYNE3-201ENST00000334258 3275 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
HMGB1P09429 ZDHHC6-201ENST00000369404 1721 ntAPPRIS ALT1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HMGB1P09429 DRD2-201ENST00000346454 2433 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
HMGB1P09429 ZEB2-204ENST00000409487 5361 ntAPPRIS P2 TSL 5 BASIC15.88■□□□□ 0.13
HMGB1P09429 SRRM1-201ENST00000323848 4011 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
HMGB1P09429 IKZF1-204ENST00000349824 5757 ntTSL 5 BASIC15.88■□□□□ 0.13
HMGB1P09429 AP001999.1-201ENST00000513405 3684 ntTSL 2 BASIC15.88■□□□□ 0.13
HMGB1P09429 GRIA4-210ENST00000527669 2647 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
HMGB1P09429 GLIS3-201ENST00000324333 6667 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
HMGB1P09429 EDEM3-201ENST00000318130 6898 ntAPPRIS P2 TSL 1 (best) BASIC15.88■□□□□ 0.13
HMGB1P09429 FHOD3-207ENST00000591635 3035 ntTSL 5 BASIC15.88■□□□□ 0.13
HMGB1P09429 AC012358.2-201ENST00000430010 1434 ntBASIC15.88■□□□□ 0.13
HMGB1P09429 PPFIBP1-215ENST00000542629 3208 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
HMGB1P09429 DCUN1D4-201ENST00000334635 4312 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HMGB1P09429 RAB37-203ENST00000392612 2528 ntTSL 2 BASIC15.88■□□□□ 0.13
HMGB1P09429 MCF2L-204ENST00000375608 3648 ntTSL 5 BASIC15.88■□□□□ 0.13
HMGB1P09429 NPNT-211ENST00000506666 2187 ntTSL 2 BASIC15.88■□□□□ 0.13
HMGB1P09429 FLAD1-202ENST00000295530 1211 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
HMGB1P09429 TMEM95-201ENST00000330767 1169 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
HMGB1P09429 CMTM5-203ENST00000359320 1200 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HMGB1P09429 AL359853.1-202ENST00000415218 544 ntTSL 2 BASIC15.88■□□□□ 0.13
HMGB1P09429 RPL35P9-201ENST00000446059 350 ntBASIC15.88■□□□□ 0.13
HMGB1P09429 MUSTN1-202ENST00000486659 622 ntTSL 2 BASIC15.88■□□□□ 0.13
HMGB1P09429 AC004889.1-205ENST00000493248 531 ntTSL 4 BASIC15.88■□□□□ 0.13
HMGB1P09429 OR2A1-AS1-210ENST00000496968 531 ntBASIC15.88■□□□□ 0.13
HMGB1P09429 RPL29P2-202ENST00000498671 657 ntBASIC15.88■□□□□ 0.13
HMGB1P09429 AC008438.1-201ENST00000507521 549 ntTSL 2 BASIC15.88■□□□□ 0.13
HMGB1P09429 CFL1-214ENST00000534769 758 ntTSL 2 BASIC15.88■□□□□ 0.13
HMGB1P09429 BID-209ENST00000551952 700 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HMGB1P09429 HCG18-245ENST00000602550 559 ntTSL 4 BASIC15.88■□□□□ 0.13
HMGB1P09429 COQ4-204ENST00000608951 781 ntTSL 2 BASIC15.88■□□□□ 0.13
HMGB1P09429 SMYD5-209ENST00000629411 246 ntTSL 5 BASIC15.88■□□□□ 0.13
HMGB1P09429 HACD3-210ENST00000568793 1824 ntTSL 5 BASIC15.88■□□□□ 0.13
HMGB1P09429 ANKRD11-201ENST00000301030 9301 ntAPPRIS P2 TSL 5 BASIC15.88■□□□□ 0.13
HMGB1P09429 CREBZF-204ENST00000527447 4037 ntAPPRIS P1 BASIC15.88■□□□□ 0.13
HMGB1P09429 TRMT2B-202ENST00000372936 3327 ntAPPRIS P3 TSL 1 (best) BASIC15.88■□□□□ 0.13
HMGB1P09429 IKZF1-202ENST00000343574 5925 ntTSL 5 BASIC15.88■□□□□ 0.13
HMGB1P09429 SOX30-203ENST00000519442 1666 ntAPPRIS ALT2 TSL 2 BASIC15.88■□□□□ 0.13
HMGB1P09429 FAM71E2-201ENST00000424985 3191 ntAPPRIS P1 TSL 5 BASIC15.88■□□□□ 0.13
HMGB1P09429 LAMB2-201ENST00000305544 5643 ntAPPRIS P1 TSL 1 (best) BASIC15.88■□□□□ 0.13
HMGB1P09429 PTPRVP-205ENST00000641549 5067 ntBASIC15.88■□□□□ 0.13
HMGB1P09429 MICA-210ENST00000616296 2260 ntTSL 5 BASIC15.88■□□□□ 0.13
HMGB1P09429 TAB2-208ENST00000636456 3092 ntTSL 5 BASIC15.88■□□□□ 0.13
HMGB1P09429 CLCN6-201ENST00000312413 5631 ntTSL 2 BASIC15.88■□□□□ 0.13
HMGB1P09429 LARP4-201ENST00000293618 6296 ntTSL 1 (best) BASIC15.88■□□□□ 0.13
HMGB1P09429 AFG3L2P1-201ENST00000521792 1763 ntBASIC15.87■□□□□ 0.13
HMGB1P09429 AC018904.2-201ENST00000561202 1757 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB1P09429 BCAP29-201ENST00000005259 4572 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB1P09429 SF3A1-201ENST00000215793 5143 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB1P09429 UBE2V1-222ENST00000557021 2258 ntTSL 5 BASIC15.87■□□□□ 0.13
HMGB1P09429 PLEKHA7-202ENST00000355661 4980 ntAPPRIS P2 TSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB1P09429 CYYR1-201ENST00000299340 3101 ntAPPRIS P1 TSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB1P09429 RBM10-206ENST00000628161 3105 ntAPPRIS ALT2 TSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB1P09429 Z98259.1-201ENST00000564261 1697 ntBASIC15.87■□□□□ 0.13
HMGB1P09429 INVS-201ENST00000262456 2968 ntTSL 5 BASIC15.87■□□□□ 0.13
HMGB1P09429 CXCL12-205ENST00000395794 1052 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB1P09429 CXorf40A-205ENST00000423540 1208 ntAPPRIS P3 TSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB1P09429 NUBP1-202ENST00000433392 1185 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB1P09429 LINC02028-203ENST00000443776 453 ntTSL 3 BASIC15.87■□□□□ 0.13
HMGB1P09429 AC091179.2-201ENST00000495536 532 ntTSL 3 BASIC15.87■□□□□ 0.13
HMGB1P09429 HNRNPA1P56-201ENST00000505767 954 ntBASIC15.87■□□□□ 0.13
HMGB1P09429 AP003168.2-201ENST00000531215 471 ntTSL 3 BASIC15.87■□□□□ 0.13
HMGB1P09429 LINC01475-201ENST00000548010 766 ntTSL 1 (best) BASIC15.87■□□□□ 0.13
HMGB1P09429 ORMDL2-205ENST00000552672 760 ntTSL 2 BASIC15.87■□□□□ 0.13
HMGB1P09429 AC079336.3-201ENST00000577227 475 ntTSL 3 BASIC15.87■□□□□ 0.13
Retrieved 100 of 98,524 protein–RNA pairs in 41.6 ms