Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 MAP7D2-201ENST00000379643 3918 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
HLA-DOAP06340 HOXC4-202ENST00000430889 1666 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
HLA-DOAP06340 ARCN1-204ENST00000534182 1669 ntTSL 5 BASIC15.76■□□□□ 0.11
HLA-DOAP06340 GTF2F2-201ENST00000340473 2239 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
HLA-DOAP06340 PLXNB2-201ENST00000359337 6335 ntAPPRIS P1 TSL 5 BASIC15.76■□□□□ 0.11
HLA-DOAP06340 HOXC11-202ENST00000546378 3261 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
HLA-DOAP06340 RNF43-202ENST00000577625 2198 ntTSL 2 BASIC15.76■□□□□ 0.11
HLA-DOAP06340 HTR4-203ENST00000377888 2962 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
HLA-DOAP06340 SYNGAP1-203ENST00000428982 4339 ntTSL 5 BASIC15.76■□□□□ 0.11
HLA-DOAP06340 ARAP1-204ENST00000393609 5145 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
HLA-DOAP06340 STT3A-211ENST00000529196 2402 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
HLA-DOAP06340 NGEF-201ENST00000264051 3215 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
HLA-DOAP06340 KIR3DL1-203ENST00000391728 1871 ntAPPRIS P2 TSL 1 (best) BASIC15.76■□□□□ 0.11
HLA-DOAP06340 PSG8-AS1-201ENST00000425668 1873 ntTSL 2 BASIC15.76■□□□□ 0.11
HLA-DOAP06340 RHOH-219ENST00000614836 2114 ntAPPRIS P1 TSL 3 BASIC15.76■□□□□ 0.11
HLA-DOAP06340 PDE4D-203ENST00000340635 8232 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
HLA-DOAP06340 TMUB2-205ENST00000587172 1598 ntTSL 2 BASIC15.76■□□□□ 0.11
HLA-DOAP06340 DDC-214ENST00000622873 1839 ntTSL 3 BASIC15.76■□□□□ 0.11
HLA-DOAP06340 CAMK2B-217ENST00000457475 4142 ntTSL 5 BASIC15.76■□□□□ 0.11
HLA-DOAP06340 CMIP-202ENST00000537098 4357 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
HLA-DOAP06340 CMTR2-201ENST00000338099 4869 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
HLA-DOAP06340 KRT18P44-201ENST00000416086 1285 ntBASIC15.76■□□□□ 0.11
HLA-DOAP06340 AC011284.1-201ENST00000427920 856 ntTSL 4 BASIC15.76■□□□□ 0.11
HLA-DOAP06340 AL773545.2-201ENST00000442149 472 ntBASIC15.76■□□□□ 0.11
HLA-DOAP06340 AL137779.3-201ENST00000553295 729 ntBASIC15.76■□□□□ 0.11
HLA-DOAP06340 IRF3-213ENST00000596765 710 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
HLA-DOAP06340 AC020904.3-201ENST00000624199 442 ntBASIC15.76■□□□□ 0.11
HLA-DOAP06340 CCDC88A-201ENST00000263630 9667 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
HLA-DOAP06340 SNRPN-205ENST00000400100 1751 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
HLA-DOAP06340 DDX19B-208ENST00000563392 1760 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
HLA-DOAP06340 NRG1-201ENST00000287842 2035 ntAPPRIS P4 TSL 1 (best) BASIC15.76■□□□□ 0.11
HLA-DOAP06340 SFSWAP-201ENST00000261674 3246 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
HLA-DOAP06340 AC130686.1-201ENST00000622936 2466 ntBASIC15.76■□□□□ 0.11
HLA-DOAP06340 LRRC17-202ENST00000339431 1963 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
HLA-DOAP06340 KCNJ9-201ENST00000368088 4170 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
HLA-DOAP06340 ERAL1-201ENST00000254928 1925 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
HLA-DOAP06340 MAP3K12-201ENST00000267079 4319 ntAPPRIS P3 TSL 1 (best) BASIC15.76■□□□□ 0.11
HLA-DOAP06340 VOPP1-206ENST00000428097 1671 ntTSL 3 BASIC15.76■□□□□ 0.11
HLA-DOAP06340 APOL2-203ENST00000451256 1421 ntAPPRIS ALT2 TSL 2 BASIC15.76■□□□□ 0.11
HLA-DOAP06340 ARHGEF26-203ENST00000465817 2353 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
HLA-DOAP06340 TCP1-215ENST00000544255 1403 ntTSL 5 BASIC15.76■□□□□ 0.11
HLA-DOAP06340 IKZF1-202ENST00000343574 5925 ntTSL 5 BASIC15.76■□□□□ 0.11
HLA-DOAP06340 OPLAH-204ENST00000618853 4031 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
HLA-DOAP06340 TSPOAP1-201ENST00000268893 7483 ntAPPRIS ALT2 TSL 1 (best) BASIC15.76■□□□□ 0.11
HLA-DOAP06340 IFITM10-201ENST00000340134 3706 ntAPPRIS P1 TSL 3 BASIC15.76■□□□□ 0.11
HLA-DOAP06340 AC241585.2-201ENST00000578899 2307 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
HLA-DOAP06340 MIF4GD-201ENST00000245551 1358 ntTSL 3 BASIC15.75■□□□□ 0.11
HLA-DOAP06340 ECI2-201ENST00000361538 1380 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
HLA-DOAP06340 CYP51A1-AS1-201ENST00000453068 2957 ntTSL 5 BASIC15.75■□□□□ 0.11
HLA-DOAP06340 HLA-DQA1-201ENST00000343139 1591 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
HLA-DOAP06340 FAM224B-201ENST00000458667 2032 ntTSL 2 BASIC15.75■□□□□ 0.11
HLA-DOAP06340 FTO-214ENST00000636218 2227 ntTSL 5 BASIC15.75■□□□□ 0.11
HLA-DOAP06340 NRG1-211ENST00000520502 1330 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
HLA-DOAP06340 RB1-201ENST00000267163 4840 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
HLA-DOAP06340 MMP14-201ENST00000311852 3732 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
HLA-DOAP06340 NAMA-207ENST00000605707 1748 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
HLA-DOAP06340 GLIS3-201ENST00000324333 6667 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
HLA-DOAP06340 MAGED4B-201ENST00000335504 2578 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
HLA-DOAP06340 SLC5A11-211ENST00000569071 1919 ntTSL 5 BASIC15.75■□□□□ 0.11
HLA-DOAP06340 APBB1IP-202ENST00000376236 2771 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
HLA-DOAP06340 CRMP1-205ENST00000512574 2764 ntTSL 2 BASIC15.75■□□□□ 0.11
HLA-DOAP06340 GLRX2-202ENST00000367440 1131 ntAPPRIS P4 TSL 1 (best) BASIC15.75■□□□□ 0.11
HLA-DOAP06340 AL357373.1-201ENST00000394974 322 ntBASIC15.75■□□□□ 0.11
HLA-DOAP06340 SERF2-205ENST00000403425 690 ntTSL 2 BASIC15.75■□□□□ 0.11
HLA-DOAP06340 FAM126A-201ENST00000409763 616 ntTSL 2 BASIC15.75■□□□□ 0.11
HLA-DOAP06340 AC096536.3-201ENST00000415336 575 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
HLA-DOAP06340 AL359092.2-201ENST00000423330 585 ntBASIC15.75■□□□□ 0.11
HLA-DOAP06340 AC098649.1-201ENST00000427258 569 ntTSL 4 BASIC15.75■□□□□ 0.11
HLA-DOAP06340 AL359182.1-201ENST00000435915 469 ntTSL 3 BASIC15.75■□□□□ 0.11
HLA-DOAP06340 FHIT-205ENST00000476844 1033 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
HLA-DOAP06340 H1FOO-202ENST00000503977 881 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
HLA-DOAP06340 LUCAT1-201ENST00000511918 828 ntTSL 3 BASIC15.75■□□□□ 0.11
HLA-DOAP06340 AC105133.1-201ENST00000559749 742 ntTSL 3 BASIC15.75■□□□□ 0.11
HLA-DOAP06340 AC007610.1-201ENST00000568130 498 ntTSL 3 BASIC15.75■□□□□ 0.11
HLA-DOAP06340 HAMP-203ENST00000598398 652 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
HLA-DOAP06340 AC136475.7-201ENST00000602949 592 ntBASIC15.75■□□□□ 0.11
HLA-DOAP06340 AC092535.4-201ENST00000609548 397 ntBASIC15.75■□□□□ 0.11
HLA-DOAP06340 AC117500.5-201ENST00000623233 527 ntBASIC15.75■□□□□ 0.11
HLA-DOAP06340 LINC00694-204ENST00000637612 1059 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
HLA-DOAP06340 HORMAD1-202ENST00000361824 1692 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
HLA-DOAP06340 PGM1-202ENST00000371084 2472 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
HLA-DOAP06340 FCHSD1-209ENST00000522783 2477 ntTSL 5 BASIC15.75■□□□□ 0.11
HLA-DOAP06340 NUTM2G-201ENST00000354649 2851 ntAPPRIS P3 TSL 5 BASIC15.75■□□□□ 0.11
HLA-DOAP06340 SYK-203ENST00000375751 4936 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
HLA-DOAP06340 RAB6C-201ENST00000410061 3075 ntAPPRIS P1 BASIC15.75■□□□□ 0.11
HLA-DOAP06340 RGS8-204ENST00000483095 1432 ntAPPRIS P1 TSL 2 BASIC15.75■□□□□ 0.11
HLA-DOAP06340 SETD6-203ENST00000394266 3423 ntTSL 5 BASIC15.75■□□□□ 0.11
HLA-DOAP06340 COL16A1-202ENST00000373668 3643 ntTSL 2 BASIC15.75■□□□□ 0.11
HLA-DOAP06340 SLC19A1-201ENST00000311124 3811 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
HLA-DOAP06340 MYOM3-202ENST00000374434 5804 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
HLA-DOAP06340 KDM2B-205ENST00000536437 2762 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
HLA-DOAP06340 FAM183BP-201ENST00000409072 1595 ntBASIC15.75■□□□□ 0.11
HLA-DOAP06340 PRKAR1A-203ENST00000392711 4327 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
HLA-DOAP06340 BMF-201ENST00000354670 4687 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
HLA-DOAP06340 ATF4P4-201ENST00000393544 1930 ntBASIC15.74■□□□□ 0.11
HLA-DOAP06340 MSNP1-201ENST00000511640 1732 ntBASIC15.74■□□□□ 0.11
HLA-DOAP06340 FLNC-201ENST00000325888 9188 ntAPPRIS P3 TSL 1 (best) BASIC15.74■□□□□ 0.11
HLA-DOAP06340 ACO1-203ENST00000541043 3618 ntAPPRIS P1 TSL 5 BASIC15.74■□□□□ 0.11
HLA-DOAP06340 PMS1-221ENST00000624204 3417 ntTSL 2 BASIC15.74■□□□□ 0.11
HLA-DOAP06340 AC141928.1-201ENST00000511928 4525 ntTSL 1 (best) BASIC15.74■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 45.2 ms