Protein–RNA interactions for Protein: Q2UY09

COL28A1, Collagen alpha-1(XXVIII) chain, humanhuman

Predictions only

Length 1,125 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1Q2UY09 USP33-202ENST00000370792 2917 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
COL28A1Q2UY09 ASB3-201ENST00000263634 2214 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL28A1Q2UY09 ADAMTS10-201ENST00000270328 4194 ntAPPRIS P1 TSL 5 BASIC13.06□□□□□ -0.32
COL28A1Q2UY09 TGOLN2-204ENST00000409015 2276 ntAPPRIS ALT2 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL28A1Q2UY09 DAO-208ENST00000551281 1345 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
COL28A1Q2UY09 KCNH6-204ENST00000581784 3017 ntTSL 2 BASIC13.06□□□□□ -0.32
COL28A1Q2UY09 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC13.06□□□□□ -0.32
COL28A1Q2UY09 KRT8P24-201ENST00000560290 1559 ntBASIC13.06□□□□□ -0.32
COL28A1Q2UY09 AL357054.3-201ENST00000607084 2055 ntTSL 5 BASIC13.06□□□□□ -0.32
COL28A1Q2UY09 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL28A1Q2UY09 EGR2-202ENST00000411732 2824 ntTSL 2 BASIC13.06□□□□□ -0.32
COL28A1Q2UY09 DGKD-201ENST00000264057 6297 ntAPPRIS P3 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL28A1Q2UY09 PRL-201ENST00000306482 1354 ntAPPRIS P1 TSL 1 (best) BASIC13.06□□□□□ -0.32
COL28A1Q2UY09 AC098936.1-201ENST00000442318 2885 ntTSL 2 BASIC13.06□□□□□ -0.32
COL28A1Q2UY09 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC13.06□□□□□ -0.32
COL28A1Q2UY09 ACTR2-202ENST00000377982 2685 ntTSL 1 (best) BASIC13.06□□□□□ -0.32
COL28A1Q2UY09 CCT7-201ENST00000258091 1916 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL28A1Q2UY09 IGF2-203ENST00000381395 4527 ntAPPRIS P2 TSL 2 BASIC13.05□□□□□ -0.32
COL28A1Q2UY09 TPO-205ENST00000382201 2956 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
COL28A1Q2UY09 MSRB3-202ENST00000355192 4289 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
COL28A1Q2UY09 YIPF3-213ENST00000506469 1444 ntTSL 5 BASIC13.05□□□□□ -0.32
COL28A1Q2UY09 MIRLET7BHG-201ENST00000360737 4560 ntTSL 2 BASIC13.05□□□□□ -0.32
COL28A1Q2UY09 AP1M2-201ENST00000250244 1749 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL28A1Q2UY09 CACNA2D1-202ENST00000356860 7563 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL28A1Q2UY09 PRDM16-201ENST00000270722 8690 ntAPPRIS P3 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL28A1Q2UY09 OSCP1-201ENST00000235532 1455 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL28A1Q2UY09 TAF9-202ENST00000328663 1461 ntAPPRIS P2 TSL 2 BASIC13.05□□□□□ -0.32
COL28A1Q2UY09 OSCP1-203ENST00000356637 1463 ntTSL 5 BASIC13.05□□□□□ -0.32
COL28A1Q2UY09 PSME3-203ENST00000541124 3366 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
COL28A1Q2UY09 GNAS-215ENST00000371102 3438 ntTSL 5 BASIC13.05□□□□□ -0.32
COL28A1Q2UY09 ROPN1-206ENST00000479867 2056 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
COL28A1Q2UY09 IL2RG-203ENST00000374202 1534 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL28A1Q2UY09 ALG3-205ENST00000445626 1533 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
COL28A1Q2UY09 NAP1L1-226ENST00000552342 1526 ntTSL 5 BASIC13.05□□□□□ -0.32
COL28A1Q2UY09 ZBED6CL-201ENST00000343855 2933 ntAPPRIS P1 BASIC13.05□□□□□ -0.32
COL28A1Q2UY09 TOE1-201ENST00000372090 2389 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL28A1Q2UY09 C12orf43-202ENST00000445832 2397 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
COL28A1Q2UY09 WASHC2C-210ENST00000623400 4616 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL28A1Q2UY09 LGALS12-204ENST00000415491 1816 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
COL28A1Q2UY09 USP22-201ENST00000261497 5220 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL28A1Q2UY09 VPS25-201ENST00000253794 1101 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL28A1Q2UY09 SPATA21-202ENST00000375577 1136 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
COL28A1Q2UY09 HORMAD2-AS1-202ENST00000432568 727 ntTSL 3 BASIC13.05□□□□□ -0.32
COL28A1Q2UY09 OR4C14P-201ENST00000440929 923 ntBASIC13.05□□□□□ -0.32
COL28A1Q2UY09 NALT1-202ENST00000450304 437 ntTSL 3 BASIC13.05□□□□□ -0.32
COL28A1Q2UY09 AC098820.2-201ENST00000457694 666 ntTSL 5 BASIC13.05□□□□□ -0.32
COL28A1Q2UY09 SOX2-OT-209ENST00000485035 561 ntTSL 4 BASIC13.05□□□□□ -0.32
COL28A1Q2UY09 AC093300.1-201ENST00000510368 1201 ntBASIC13.05□□□□□ -0.32
COL28A1Q2UY09 PTPN20-229ENST00000513756 640 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
COL28A1Q2UY09 AC117834.1-201ENST00000523197 602 ntTSL 4 BASIC13.05□□□□□ -0.32
COL28A1Q2UY09 DPP3-209ENST00000531863 2974 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
COL28A1Q2UY09 AC011921.1-201ENST00000559739 557 ntTSL 4 BASIC13.05□□□□□ -0.32
COL28A1Q2UY09 SOX2-OT-222ENST00000595084 853 ntTSL 5 BASIC13.05□□□□□ -0.32
COL28A1Q2UY09 AC006547.1-209ENST00000596334 996 ntTSL 5 BASIC13.05□□□□□ -0.32
COL28A1Q2UY09 PCP2-202ENST00000598935 457 ntAPPRIS ALT2 TSL 3 BASIC13.05□□□□□ -0.32
COL28A1Q2UY09 SOX2-OT-232ENST00000600386 792 ntTSL 5 BASIC13.05□□□□□ -0.32
COL28A1Q2UY09 PLA2G4C-AS1-203ENST00000601950 454 ntTSL 3 BASIC13.05□□□□□ -0.32
COL28A1Q2UY09 MRPS31P4-202ENST00000613769 583 ntTSL 4 BASIC13.05□□□□□ -0.32
COL28A1Q2UY09 KRTAP10-4-202ENST00000616689 597 ntAPPRIS ALT2 TSL 5 BASIC13.05□□□□□ -0.32
COL28A1Q2UY09 AC126755.5-201ENST00000622756 267 ntBASIC13.05□□□□□ -0.32
COL28A1Q2UY09 KDELR1-201ENST00000330720 1557 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL28A1Q2UY09 CYB5D2-203ENST00000575251 1588 ntTSL 2 BASIC13.05□□□□□ -0.32
COL28A1Q2UY09 SETD1B-202ENST00000542440 8185 ntAPPRIS P2 TSL 5 BASIC13.05□□□□□ -0.32
COL28A1Q2UY09 AC002407.1-201ENST00000636668 3863 ntTSL 5 BASIC13.05□□□□□ -0.32
COL28A1Q2UY09 PML-202ENST00000268059 3029 ntAPPRIS ALT2 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL28A1Q2UY09 USP40-208ENST00000450966 5616 ntAPPRIS P2 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL28A1Q2UY09 HECTD3-202ENST00000372172 3610 ntAPPRIS P1 TSL 5 BASIC13.05□□□□□ -0.32
COL28A1Q2UY09 TRIB2-202ENST00000381465 2778 ntTSL 2 BASIC13.05□□□□□ -0.32
COL28A1Q2UY09 FGF12-207ENST00000454309 3058 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL28A1Q2UY09 PDXDC2P-206ENST00000534700 1315 ntBASIC13.05□□□□□ -0.32
COL28A1Q2UY09 TMEM45A-202ENST00000403410 1910 ntTSL 5 BASIC13.05□□□□□ -0.32
COL28A1Q2UY09 LDLRAD2-201ENST00000344642 4012 ntAPPRIS P1 TSL 2 BASIC13.05□□□□□ -0.32
COL28A1Q2UY09 HIF3A-202ENST00000244303 2250 ntTSL 2 BASIC13.05□□□□□ -0.32
COL28A1Q2UY09 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL28A1Q2UY09 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL28A1Q2UY09 LINC00682-202ENST00000499082 1384 ntTSL 1 (best) BASIC13.05□□□□□ -0.32
COL28A1Q2UY09 PDE2A-206ENST00000444035 4193 ntAPPRIS ALT1 TSL 5 BASIC13.05□□□□□ -0.32
COL28A1Q2UY09 FAM200B-201ENST00000422728 2962 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL28A1Q2UY09 C10orf71-201ENST00000374144 5230 ntAPPRIS P1 TSL 1 (best) BASIC13.05□□□□□ -0.32
COL28A1Q2UY09 PPP6R2-202ENST00000359139 4035 ntAPPRIS ALT2 TSL 2 BASIC13.04□□□□□ -0.32
COL28A1Q2UY09 TICRR-201ENST00000268138 6775 ntAPPRIS P3 TSL 5 BASIC13.04□□□□□ -0.32
COL28A1Q2UY09 AC114271.1-201ENST00000612689 2813 ntBASIC13.04□□□□□ -0.32
COL28A1Q2UY09 HIPK1-205ENST00000369558 8157 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL28A1Q2UY09 TYK2-210ENST00000529370 3176 ntTSL 2 BASIC13.04□□□□□ -0.32
COL28A1Q2UY09 BRSK2-207ENST00000528710 3528 ntTSL 2 BASIC13.04□□□□□ -0.32
COL28A1Q2UY09 OSBPL5-201ENST00000263650 3889 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL28A1Q2UY09 EDEM3-202ENST00000367512 6678 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL28A1Q2UY09 FLOT2-210ENST00000585169 2585 ntAPPRIS ALT1 TSL 5 BASIC13.04□□□□□ -0.32
COL28A1Q2UY09 TPM3P9-201ENST00000424846 2920 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
COL28A1Q2UY09 AP1G2-201ENST00000308724 3298 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL28A1Q2UY09 RET-205ENST00000615310 4337 ntTSL 5 BASIC13.04□□□□□ -0.32
COL28A1Q2UY09 PI4KA-201ENST00000255882 6752 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL28A1Q2UY09 GET4-202ENST00000407192 4356 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL28A1Q2UY09 NDRG4-221ENST00000563799 3014 ntAPPRIS ALT1 TSL 2 BASIC13.04□□□□□ -0.32
COL28A1Q2UY09 LOXHD1-203ENST00000398686 1958 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
COL28A1Q2UY09 ZNF570-201ENST00000330173 5559 ntAPPRIS P1 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL28A1Q2UY09 GOT2-202ENST00000434819 1615 ntTSL 2 BASIC13.04□□□□□ -0.32
COL28A1Q2UY09 PPFIA4-204ENST00000447715 6349 ntAPPRIS ALT2 TSL 1 (best) BASIC13.04□□□□□ -0.32
COL28A1Q2UY09 PCDHA2-202ENST00000520672 3056 ntTSL 1 (best) BASIC13.04□□□□□ -0.32
COL28A1Q2UY09 HYOU1-219ENST00000614711 3057 ntTSL 5 BASIC13.04□□□□□ -0.32
Retrieved 100 of 98,524 protein–RNA pairs in 39 ms