Protein–RNA interactions for Protein: P12004

PCNA, Proliferating cell nuclear antigen, humanhuman

Predictions only

Length 261 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCNAP12004 AC090617.4-201ENST00000572404 422 ntTSL 3 BASIC13.27□□□□□ -0.29
PCNAP12004 AC005726.2-204ENST00000577790 511 ntAPPRIS ALT2 TSL 4 BASIC13.27□□□□□ -0.29
PCNAP12004 AC011444.1-201ENST00000587836 639 ntTSL 3 BASIC13.27□□□□□ -0.29
PCNAP12004 IMPA2-207ENST00000588927 787 ntTSL 5 BASIC13.27□□□□□ -0.29
PCNAP12004 AC006064.4-201ENST00000602946 422 ntTSL 2 BASIC13.27□□□□□ -0.29
PCNAP12004 AF254983.2-201ENST00000612331 135 ntBASIC13.27□□□□□ -0.29
PCNAP12004 INSRR-201ENST00000368195 5101 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
PCNAP12004 BCL2L1-201ENST00000307677 2610 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
PCNAP12004 MEIKIN-205ENST00000616644 1438 ntAPPRIS ALT2 TSL 5 BASIC13.27□□□□□ -0.29
PCNAP12004 ARHGEF33-201ENST00000398800 4300 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
PCNAP12004 VAMP2-202ENST00000404970 1479 ntTSL 2 BASIC13.27□□□□□ -0.29
PCNAP12004 LINC00969-231ENST00000597482 1476 ntTSL 5 BASIC13.27□□□□□ -0.29
PCNAP12004 RERE-212ENST00000476556 4598 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
PCNAP12004 IMMT-212ENST00000620815 1520 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
PCNAP12004 Z98257.2-202ENST00000641138 1548 ntBASIC13.27□□□□□ -0.29
PCNAP12004 MTMR2-201ENST00000346299 4681 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
PCNAP12004 MTMR2-203ENST00000393223 4681 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
PCNAP12004 RTN3-210ENST00000540798 3124 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
PCNAP12004 MOCS1-204ENST00000373188 3358 ntTSL 1 (best) BASIC13.27□□□□□ -0.29
PCNAP12004 EFEMP1-201ENST00000355426 1820 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
PCNAP12004 SLC6A9-207ENST00000475075 1881 ntTSL 2 BASIC13.27□□□□□ -0.29
PCNAP12004 ZNF283-209ENST00000618787 5713 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.29
PCNAP12004 MANBAL-201ENST00000373605 1915 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.29
PCNAP12004 COX6B2-210ENST00000593184 2083 ntAPPRIS P1 TSL 2 BASIC13.27□□□□□ -0.29
PCNAP12004 SLC16A2-201ENST00000587091 4161 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
PCNAP12004 AGGF1P10-201ENST00000635005 2191 ntBASIC13.27□□□□□ -0.29
PCNAP12004 EIF2AK1-201ENST00000199389 4469 ntAPPRIS P1 TSL 1 (best) BASIC13.27□□□□□ -0.29
PCNAP12004 HDLBP-204ENST00000391976 4489 ntAPPRIS P1 TSL 5 BASIC13.27□□□□□ -0.29
PCNAP12004 CCDC18-203ENST00000401026 4552 ntAPPRIS ALT2 TSL 1 (best) BASIC13.27□□□□□ -0.29
PCNAP12004 C17orf53-203ENST00000585683 2529 ntAPPRIS ALT2 TSL 2 BASIC13.27□□□□□ -0.29
PCNAP12004 AC015819.3-201ENST00000624305 2674 ntBASIC13.26□□□□□ -0.29
PCNAP12004 HNRNPUL1-207ENST00000595018 2794 ntTSL 2 BASIC13.26□□□□□ -0.29
PCNAP12004 SGSM3-201ENST00000248929 2969 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
PCNAP12004 SNX25-201ENST00000264694 3264 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
PCNAP12004 FGFRL1-202ENST00000398484 3639 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
PCNAP12004 RNFT2-201ENST00000257575 3882 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
PCNAP12004 USP20-201ENST00000315480 4458 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
PCNAP12004 GREB1-206ENST00000396123 5296 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
PCNAP12004 SIRT2-201ENST00000249396 2070 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
PCNAP12004 PCDHGA3-201ENST00000253812 4771 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
PCNAP12004 NEXN-201ENST00000330010 3195 ntTSL 2 BASIC13.26□□□□□ -0.29
PCNAP12004 ATF3-202ENST00000341491 2033 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
PCNAP12004 C5AR1-201ENST00000355085 2311 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
PCNAP12004 TOMM7-201ENST00000358435 778 ntAPPRIS P2 TSL 1 (best) BASIC13.26□□□□□ -0.29
PCNAP12004 CSNK1E-201ENST00000359867 2642 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
PCNAP12004 ZFYVE27-205ENST00000370613 2669 ntTSL 2 BASIC13.26□□□□□ -0.29
PCNAP12004 TCEAL6-201ENST00000372773 983 ntAPPRIS P1 TSL 3 BASIC13.26□□□□□ -0.29
PCNAP12004 UBXN11-207ENST00000374223 1312 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
PCNAP12004 SIRT2-204ENST00000392081 2062 ntAPPRIS ALT1 TSL 1 (best) BASIC13.26□□□□□ -0.29
PCNAP12004 Z82214.1-201ENST00000419643 988 ntTSL 3 BASIC13.26□□□□□ -0.29
PCNAP12004 AC007274.2-201ENST00000421675 662 ntBASIC13.26□□□□□ -0.29
PCNAP12004 GOLGA6L4-202ENST00000422563 4155 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
PCNAP12004 ZNF398-201ENST00000426851 5268 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
PCNAP12004 AC092573.1-201ENST00000433054 884 ntBASIC13.26□□□□□ -0.29
PCNAP12004 RIN2-202ENST00000440354 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
PCNAP12004 AC129492.3-201ENST00000498285 460 ntAPPRIS P1 TSL 4 BASIC13.26□□□□□ -0.29
PCNAP12004 ADRA1A-210ENST00000519229 1838 ntTSL 5 BASIC13.26□□□□□ -0.29
PCNAP12004 GATD1-205ENST00000524550 995 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
PCNAP12004 ABI1-213ENST00000536334 3380 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
PCNAP12004 PTGR1-209ENST00000538962 1200 ntTSL 2 BASIC13.26□□□□□ -0.29
PCNAP12004 FGFR3P5-201ENST00000564496 886 ntBASIC13.26□□□□□ -0.29
PCNAP12004 ZFYVE19-215ENST00000570108 1669 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
PCNAP12004 PCDHGB3-201ENST00000576222 4727 ntTSL 1 (best) BASIC13.26□□□□□ -0.29
PCNAP12004 CELF4-217ENST00000591282 1461 ntAPPRIS P3 TSL 1 (best) BASIC13.26□□□□□ -0.29
PCNAP12004 AC008982.2-201ENST00000600473 493 ntTSL 5 BASIC13.26□□□□□ -0.29
PCNAP12004 MUC1-225ENST00000612778 1836 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
PCNAP12004 AL022323.5-201ENST00000624101 2059 ntBASIC13.26□□□□□ -0.29
PCNAP12004 GARS-210ENST00000627489 324 ntTSL 4 BASIC13.26□□□□□ -0.29
PCNAP12004 AL358215.2-201ENST00000639693 946 ntTSL 5 BASIC13.26□□□□□ -0.29
PCNAP12004 AC138627.1-207ENST00000641560 1006 ntBASIC13.26□□□□□ -0.29
PCNAP12004 NHSL1-204ENST00000427025 7500 ntAPPRIS ALT2 TSL 5 BASIC13.26□□□□□ -0.29
PCNAP12004 LPCAT2-201ENST00000262134 5391 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
PCNAP12004 USP47-202ENST00000339865 7775 ntTSL 2 BASIC13.26□□□□□ -0.29
PCNAP12004 ANO6-203ENST00000425752 3558 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
PCNAP12004 MATN2-211ENST00000521689 3554 ntAPPRIS ALT2 TSL 1 (best) BASIC13.26□□□□□ -0.29
PCNAP12004 XYLT2-201ENST00000017003 3507 ntAPPRIS P1 TSL 1 (best) BASIC13.26□□□□□ -0.29
PCNAP12004 AMIGO3-201ENST00000320431 2862 ntAPPRIS P1 BASIC13.26□□□□□ -0.29
PCNAP12004 EGLN3-205ENST00000547327 2849 ntBASIC13.26□□□□□ -0.29
PCNAP12004 KCNIP3-202ENST00000360990 2798 ntTSL 5 BASIC13.26□□□□□ -0.29
PCNAP12004 CCNE2-201ENST00000308108 2724 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
PCNAP12004 STRA6-206ENST00000449139 2732 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
PCNAP12004 TJAP1-205ENST00000372452 2665 ntAPPRIS P1 TSL 5 BASIC13.26□□□□□ -0.29
PCNAP12004 AC012531.1-201ENST00000562848 2680 ntBASIC13.26□□□□□ -0.29
PCNAP12004 TBC1D8-AS1-201ENST00000610202 2478 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
PCNAP12004 IKBKB-218ENST00000520835 2403 ntTSL 2 BASIC13.25□□□□□ -0.29
PCNAP12004 MKL1-211ENST00000618196 4248 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
PCNAP12004 COASY-202ENST00000421097 2071 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
PCNAP12004 PAX2-203ENST00000370296 4140 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
PCNAP12004 PAX2-205ENST00000428433 4126 ntTSL 5 BASIC13.25□□□□□ -0.29
PCNAP12004 EPHB6-211ENST00000619012 4011 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
PCNAP12004 FGGY-201ENST00000303721 1976 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
PCNAP12004 FGF10-AS1-201ENST00000502457 1894 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
PCNAP12004 AC002350.2-201ENST00000623894 1828 ntBASIC13.25□□□□□ -0.29
PCNAP12004 PLCXD2-204ENST00000477665 1721 ntTSL 1 (best) BASIC13.25□□□□□ -0.29
PCNAP12004 EPHA1-201ENST00000275815 3363 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
PCNAP12004 TBX4-202ENST00000393853 3398 ntAPPRIS ALT1 TSL 1 (best) BASIC13.25□□□□□ -0.29
PCNAP12004 DDC-212ENST00000615193 1674 ntTSL 3 BASIC13.25□□□□□ -0.29
PCNAP12004 CCDC97-201ENST00000269967 3322 ntAPPRIS P1 TSL 1 (best) BASIC13.25□□□□□ -0.29
PCNAP12004 PHKG1-201ENST00000297373 1431 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
PCNAP12004 SEC13-202ENST00000350697 1425 ntAPPRIS P2 TSL 1 (best) BASIC13.25□□□□□ -0.29
Retrieved 100 of 98,524 protein–RNA pairs in 40.1 ms