Protein–RNA interactions for Protein: P06340

HLA-DOA, HLA class II histocompatibility antigen, DO alpha chain, humanhuman

Predictions only

Length 250 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOAP06340 CYP26A1-202ENST00000371531 2245 ntTSL 2 BASIC15.84■□□□□ 0.13
HLA-DOAP06340 NFS1-203ENST00000374092 3012 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HLA-DOAP06340 ATF4-203ENST00000404241 1910 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
HLA-DOAP06340 DLGAP3-202ENST00000373347 3856 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
HLA-DOAP06340 KATNBL1-201ENST00000256544 2723 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HLA-DOAP06340 ADGRG3-201ENST00000333493 2728 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
HLA-DOAP06340 SNCAIP-222ENST00000542191 2729 ntTSL 5 BASIC15.84■□□□□ 0.13
HLA-DOAP06340 QRICH1-202ENST00000395443 3549 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HLA-DOAP06340 TMEM139-201ENST00000359333 2383 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HLA-DOAP06340 HDAC11-213ENST00000437379 2766 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
HLA-DOAP06340 SLC4A11-207ENST00000539553 2832 ntAPPRIS ALT2 TSL 2 BASIC15.84■□□□□ 0.13
HLA-DOAP06340 RXRG-201ENST00000359842 2041 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HLA-DOAP06340 TNFRSF1B-201ENST00000376259 3683 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HLA-DOAP06340 VTI1B-204ENST00000554659 5351 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HLA-DOAP06340 NGLY1-205ENST00000417874 2062 ntTSL 2 BASIC15.84■□□□□ 0.13
HLA-DOAP06340 LINC00943-204ENST00000537374 1688 ntTSL 5 BASIC15.84■□□□□ 0.13
HLA-DOAP06340 HIST1H1D-201ENST00000244534 666 ntAPPRIS P1 BASIC15.84■□□□□ 0.13
HLA-DOAP06340 PSMB4-201ENST00000290541 964 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HLA-DOAP06340 AL359649.1-202ENST00000375713 443 ntTSL 5 BASIC15.84■□□□□ 0.13
HLA-DOAP06340 MRPL55-219ENST00000391867 685 ntAPPRIS P1 TSL 3 BASIC15.84■□□□□ 0.13
HLA-DOAP06340 AL356653.1-201ENST00000402743 360 ntBASIC15.84■□□□□ 0.13
HLA-DOAP06340 HNF1A-AS1-201ENST00000433033 612 ntTSL 3 BASIC15.84■□□□□ 0.13
HLA-DOAP06340 AL357140.1-201ENST00000454104 424 ntTSL 2 BASIC15.84■□□□□ 0.13
HLA-DOAP06340 CXXC1P1-202ENST00000489409 1212 ntBASIC15.84■□□□□ 0.13
HLA-DOAP06340 AC005845.1-201ENST00000539206 653 ntTSL 3 BASIC15.84■□□□□ 0.13
HLA-DOAP06340 ANKRD26P1-203ENST00000569528 966 ntBASIC15.84■□□□□ 0.13
HLA-DOAP06340 MIR4254-201ENST00000581063 76 ntBASIC15.84■□□□□ 0.13
HLA-DOAP06340 AL627230.2-201ENST00000613254 655 ntBASIC15.84■□□□□ 0.13
HLA-DOAP06340 LINC00643-207ENST00000637212 734 ntBASIC15.84■□□□□ 0.13
HLA-DOAP06340 UBTF-209ENST00000529383 2570 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HLA-DOAP06340 ANKS1B-208ENST00000547010 2595 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
HLA-DOAP06340 TNIK-202ENST00000341852 4727 ntAPPRIS ALT2 TSL 1 (best) BASIC15.84■□□□□ 0.13
HLA-DOAP06340 KIAA0930-203ENST00000391627 2623 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
HLA-DOAP06340 IL21R-AS1-201ENST00000563191 2615 ntTSL 2 BASIC15.84■□□□□ 0.13
HLA-DOAP06340 TUBD1-202ENST00000340993 1769 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
HLA-DOAP06340 POM121-201ENST00000358357 5320 ntAPPRIS P3 TSL 1 (best) BASIC15.84■□□□□ 0.13
HLA-DOAP06340 RPAIN-202ENST00000381208 1394 ntTSL 1 (best) BASIC15.84■□□□□ 0.13
HLA-DOAP06340 MKRN7P-201ENST00000433469 1371 ntBASIC15.84■□□□□ 0.13
HLA-DOAP06340 MTMR9-201ENST00000221086 7481 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HLA-DOAP06340 POM121L4P-202ENST00000427789 1891 ntBASIC15.84■□□□□ 0.13
HLA-DOAP06340 SPIN3-204ENST00000638257 4835 ntAPPRIS P1 TSL 5 BASIC15.84■□□□□ 0.13
HLA-DOAP06340 ANO10-203ENST00000396091 2419 ntTSL 2 BASIC15.84■□□□□ 0.13
HLA-DOAP06340 LHX6-207ENST00000541397 2942 ntTSL 2 BASIC15.84■□□□□ 0.13
HLA-DOAP06340 EFHC2-202ENST00000420999 2464 ntAPPRIS P1 TSL 1 (best) BASIC15.84■□□□□ 0.13
HLA-DOAP06340 LDHAL6A-201ENST00000280706 2526 ntAPPRIS P1 TSL 2 BASIC15.84■□□□□ 0.13
HLA-DOAP06340 HNRNPLP1-201ENST00000421896 1501 ntBASIC15.84■□□□□ 0.13
HLA-DOAP06340 FAM189A2-202ENST00000303068 2051 ntTSL 2 BASIC15.83■□□□□ 0.13
HLA-DOAP06340 AC008429.1-202ENST00000518818 2067 ntTSL 2 BASIC15.83■□□□□ 0.13
HLA-DOAP06340 CDK16-202ENST00000357227 3144 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
HLA-DOAP06340 VAPA-202ENST00000400000 6815 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
HLA-DOAP06340 PCTP-207ENST00000576183 2680 ntTSL 3 BASIC15.83■□□□□ 0.13
HLA-DOAP06340 COL4A3-202ENST00000396578 8097 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.13
HLA-DOAP06340 COPS5-203ENST00000517736 1621 ntTSL 5 BASIC15.83■□□□□ 0.13
HLA-DOAP06340 AC007336.3-201ENST00000623886 2160 ntBASIC15.83■□□□□ 0.13
HLA-DOAP06340 FAM122B-201ENST00000298090 2706 ntAPPRIS ALT2 TSL 2 BASIC15.83■□□□□ 0.13
HLA-DOAP06340 AMOTL2-212ENST00000514516 4521 ntTSL 2 BASIC15.83■□□□□ 0.13
HLA-DOAP06340 SLC2A14-205ENST00000535295 1732 ntTSL 2 BASIC15.83■□□□□ 0.13
HLA-DOAP06340 AS3MT-202ENST00000615257 1723 ntTSL 5 BASIC15.83■□□□□ 0.13
HLA-DOAP06340 PLD2-201ENST00000263088 3503 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HLA-DOAP06340 LOXL3-202ENST00000393937 2398 ntTSL 5 BASIC15.83■□□□□ 0.12
HLA-DOAP06340 GRIN1-206ENST00000371559 3577 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
HLA-DOAP06340 NADSYN1-216ENST00000530055 2416 ntTSL 2 BASIC15.83■□□□□ 0.12
HLA-DOAP06340 RPP14-202ENST00000445193 7985 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HLA-DOAP06340 SYBU-208ENST00000440310 3072 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
HLA-DOAP06340 GPSM2-202ENST00000406462 7433 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
HLA-DOAP06340 NNMT-203ENST00000535401 1867 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HLA-DOAP06340 KRTAP10-11-201ENST00000334670 1237 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
HLA-DOAP06340 PRR23A-201ENST00000383163 801 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
HLA-DOAP06340 GAPDHP29-201ENST00000429913 985 ntBASIC15.83■□□□□ 0.12
HLA-DOAP06340 AC027612.2-201ENST00000436174 1145 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
HLA-DOAP06340 LINC00700-202ENST00000438372 777 ntTSL 5 BASIC15.83■□□□□ 0.12
HLA-DOAP06340 AC147876.1-201ENST00000504408 322 ntBASIC15.83■□□□□ 0.12
HLA-DOAP06340 AC018846.1-201ENST00000568231 183 ntBASIC15.83■□□□□ 0.12
HLA-DOAP06340 BLVRB-202ENST00000595483 649 ntTSL 2 BASIC15.83■□□□□ 0.12
HLA-DOAP06340 AL591424.3-201ENST00000614278 872 ntBASIC15.83■□□□□ 0.12
HLA-DOAP06340 AC245595.2-201ENST00000620141 1144 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
HLA-DOAP06340 SFTPA2-205ENST00000640627 195 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
HLA-DOAP06340 DHX16-201ENST00000376437 1933 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
HLA-DOAP06340 GGA1-206ENST00000406772 3205 ntTSL 2 BASIC15.83■□□□□ 0.12
HLA-DOAP06340 EHMT2-202ENST00000375530 3856 ntAPPRIS ALT2 TSL 5 BASIC15.83■□□□□ 0.12
HLA-DOAP06340 GPR45-201ENST00000258456 1307 ntAPPRIS P1 BASIC15.83■□□□□ 0.12
HLA-DOAP06340 AKNA-203ENST00000312033 3334 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
HLA-DOAP06340 CCDC42-201ENST00000293845 1374 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
HLA-DOAP06340 ARFGAP1-202ENST00000370275 3467 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
HLA-DOAP06340 LINC02347-203ENST00000540774 1442 ntTSL 5 BASIC15.83■□□□□ 0.12
HLA-DOAP06340 ITGB2-203ENST00000355153 2913 ntAPPRIS P1 TSL 2 BASIC15.83■□□□□ 0.12
HLA-DOAP06340 PDZD4-201ENST00000164640 3689 ntAPPRIS P3 TSL 1 (best) BASIC15.83■□□□□ 0.12
HLA-DOAP06340 PRMT7-202ENST00000441236 2204 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HLA-DOAP06340 PPRC1-203ENST00000413464 4580 ntTSL 2 BASIC15.83■□□□□ 0.12
HLA-DOAP06340 PARP3-201ENST00000398755 2336 ntAPPRIS ALT2 TSL 1 (best) BASIC15.83■□□□□ 0.12
HLA-DOAP06340 TKFC-201ENST00000394900 4696 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HLA-DOAP06340 PAPPA-201ENST00000328252 10959 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HLA-DOAP06340 AC008536.3-201ENST00000623282 1599 ntBASIC15.83■□□□□ 0.12
HLA-DOAP06340 MYO1C-218ENST00000575158 4804 ntAPPRIS P3 TSL 5 BASIC15.83■□□□□ 0.12
HLA-DOAP06340 ARL15-201ENST00000502271 3248 ntTSL 1 (best) BASIC15.83■□□□□ 0.12
HLA-DOAP06340 DMTN-206ENST00000443491 2415 ntAPPRIS P1 TSL 5 BASIC15.83■□□□□ 0.12
HLA-DOAP06340 DDX20-201ENST00000369702 4212 ntAPPRIS P1 TSL 1 (best) BASIC15.83■□□□□ 0.12
HLA-DOAP06340 IL20RA-203ENST00000367748 3522 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HLA-DOAP06340 AP003555.1-202ENST00000511013 1755 ntTSL 1 (best) BASIC15.82■□□□□ 0.12
HLA-DOAP06340 RSPRY1-202ENST00000537866 3586 ntAPPRIS P1 TSL 2 BASIC15.82■□□□□ 0.12
Retrieved 100 of 98,524 protein–RNA pairs in 40.7 ms