Protein–RNA interactions for Protein: Q9C0C7

AMBRA1, Activating molecule in BECN1-regulated autophagy protein 1, humanhuman

Predictions only

Length 1,298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AMBRA1Q9C0C7 CDKN2AIP-205ENST00000510928 860 ntTSL 2 BASIC12.74□□□□□ -0.37
AMBRA1Q9C0C7 CPLX2-209ENST00000515094 576 ntAPPRIS P1 TSL 4 BASIC12.74□□□□□ -0.37
AMBRA1Q9C0C7 NEU3-202ENST00000526068 431 ntTSL 2 BASIC12.74□□□□□ -0.37
AMBRA1Q9C0C7 AC026310.2-201ENST00000546353 728 ntTSL 4 BASIC12.74□□□□□ -0.37
AMBRA1Q9C0C7 C14orf132-201ENST00000553764 562 ntTSL 4 BASIC12.74□□□□□ -0.37
AMBRA1Q9C0C7 AC145207.3-201ENST00000576784 529 ntTSL 5 BASIC12.74□□□□□ -0.37
AMBRA1Q9C0C7 SNX1-214ENST00000625244 324 ntTSL 5 BASIC12.74□□□□□ -0.37
AMBRA1Q9C0C7 CCDC60-201ENST00000327554 2450 ntAPPRIS P2 TSL 1 (best) BASIC12.74□□□□□ -0.37
AMBRA1Q9C0C7 PARP3-202ENST00000417220 2472 ntAPPRIS P3 TSL 5 BASIC12.74□□□□□ -0.37
AMBRA1Q9C0C7 CDC42-202ENST00000344548 2256 ntAPPRIS ALT1 TSL 1 (best) BASIC12.74□□□□□ -0.37
AMBRA1Q9C0C7 DISC1-221ENST00000620189 6689 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
AMBRA1Q9C0C7 DDX54-201ENST00000306014 4377 ntAPPRIS P3 TSL 1 (best) BASIC12.74□□□□□ -0.37
AMBRA1Q9C0C7 ASAP1-201ENST00000357668 6344 ntAPPRIS ALT2 TSL 5 BASIC12.74□□□□□ -0.37
AMBRA1Q9C0C7 TRPM4-201ENST00000252826 4109 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
AMBRA1Q9C0C7 UBE2L3-204ENST00000545681 2932 ntTSL 2 BASIC12.74□□□□□ -0.37
AMBRA1Q9C0C7 CYP11B1-204ENST00000517471 1874 ntTSL 1 (best) BASIC12.74□□□□□ -0.37
AMBRA1Q9C0C7 AL356275.1-201ENST00000638446 7440 ntTSL 5 BASIC12.74□□□□□ -0.37
AMBRA1Q9C0C7 YY1AP1-205ENST00000355499 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC12.74□□□□□ -0.37
AMBRA1Q9C0C7 ZCCHC17-204ENST00000546109 1705 ntTSL 2 BASIC12.74□□□□□ -0.37
AMBRA1Q9C0C7 SPOUT1-201ENST00000361256 4286 ntAPPRIS P1 TSL 1 (best) BASIC12.74□□□□□ -0.37
AMBRA1Q9C0C7 PERM1-202ENST00000433179 3340 ntAPPRIS P2 TSL 5 BASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 IQUB-202ENST00000466202 3296 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 PDXK-210ENST00000468090 7297 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 AC026992.2-203ENST00000563004 2419 ntBASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 AL354861.3-201ENST00000600140 2412 ntBASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 DLL1-201ENST00000366756 3174 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 MCM7-213ENST00000621318 3084 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 CHD1L-202ENST00000369258 2967 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 TMEM26-202ENST00000399298 5151 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 PCDHB9-201ENST00000316105 4415 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 KRT8P21-201ENST00000430398 1491 ntBASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 ABHD18-206ENST00000611882 1493 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 TACC2-209ENST00000369004 3667 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 MYLK-201ENST00000346322 5892 ntAPPRIS ALT2 TSL 5 BASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 SCARA5-202ENST00000380385 2934 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 CASS4-202ENST00000434344 2888 ntTSL 2 BASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 ABCC10-204ENST00000372530 5033 ntAPPRIS ALT2 TSL 2 BASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 SVOPL-201ENST00000288513 1413 ntTSL 2 BASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 BFAR-203ENST00000562442 1414 ntTSL 2 BASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 KIAA1161-201ENST00000297625 6398 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 KCNH1-205ENST00000638498 3479 ntTSL 5 BASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 COASY-202ENST00000421097 2071 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 SMAD1-215ENST00000515385 2085 ntAPPRIS P1 TSL 2 BASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 SMARCA4-202ENST00000413806 5512 ntTSL 5 BASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 MTMR9-202ENST00000526292 1960 ntTSL 2 BASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 FAS-204ENST00000355740 2563 ntAPPRIS P4 TSL 1 (best) BASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 FAM214B-204ENST00000378566 2566 ntTSL 2 BASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 MAX-201ENST00000246163 897 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 RN7SKP214-201ENST00000364208 315 ntBASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 FXNP2-201ENST00000411625 547 ntBASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 DEF8-202ENST00000418391 852 ntTSL 2 BASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 VAMP8-203ENST00000432071 664 ntTSL 3 BASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 PABPC5-AS1-201ENST00000456187 426 ntTSL 5 BASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 LYRM4-206ENST00000468929 1168 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 AL713999.1-201ENST00000473363 753 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 AGTRAP-212ENST00000510878 849 ntTSL 3 BASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 AC023824.4-202ENST00000569557 849 ntTSL 3 BASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 IGHV3OR16-12-201ENST00000570121 353 ntAPPRIS P1 BASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 ZSCAN32-210ENST00000573830 668 ntTSL 3 BASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 SNRPD2-206ENST00000588301 702 ntAPPRIS P1 TSL 3 BASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 AC011447.3-201ENST00000590606 722 ntTSL 3 BASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 AC008687.7-203ENST00000598442 551 ntTSL 4 BASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 RPL18A-204ENST00000599898 491 ntTSL 2 BASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 RPS5-209ENST00000601521 1203 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 ITGA9-AS1-213ENST00000614028 913 ntTSL 5 BASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 Metazoa_SRP.141-201ENST00000615072 282 ntBASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 PICART1-201ENST00000499842 2533 ntTSL 2 BASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 DDX54-202ENST00000314045 4380 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 PLA2G4E-AS1-201ENST00000499478 2499 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 RAB18-208ENST00000611151 4931 ntTSL 5 BASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 OAS3-201ENST00000228928 6719 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 MAD2L1-201ENST00000296509 5468 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 GNPDA1-210ENST00000508177 2980 ntAPPRIS P1 TSL 1 (best) BASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 TMPRSS13-202ENST00000445164 2361 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 INTS1-201ENST00000404767 6959 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 NLRX1-214ENST00000525863 2850 ntTSL 5 BASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 MED16-204ENST00000395808 3420 ntAPPRIS ALT2 TSL 1 (best) BASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 TPO-204ENST00000382198 2283 ntTSL 1 (best) BASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 LINC00943-204ENST00000537374 1688 ntTSL 5 BASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 RMND5B-212ENST00000542098 1681 ntTSL 5 BASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 CCNE2-201ENST00000308108 2724 ntAPPRIS P1 TSL 5 BASIC12.73□□□□□ -0.37
AMBRA1Q9C0C7 RBFOX2-201ENST00000262829 1538 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 EDN1-201ENST00000379375 2033 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 PTCD2-212ENST00000543322 2029 ntTSL 2 BASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 LHFPL2-201ENST00000380345 5043 ntAPPRIS P1 TSL 5 BASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 FGFR1-207ENST00000397103 2953 ntTSL 5 BASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 AL132642.2-201ENST00000623423 1998 ntBASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 CPT1C-203ENST00000392518 2910 ntAPPRIS P3 TSL 2 BASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 GRIPAP1-207ENST00000593475 2908 ntTSL 5 BASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 TRIM21-201ENST00000254436 1924 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 TEX35-203ENST00000367641 2377 ntAPPRIS ALT2 TSL 2 BASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 HNF1A-208ENST00000541395 3332 ntTSL 2 BASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 MYL6-219ENST00000551589 1438 ntAPPRIS ALT1 TSL 2 BASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 AC138761.6-201ENST00000583997 1423 ntBASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 AC005324.3-201ENST00000455584 5514 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 MCM2-201ENST00000265056 3622 ntAPPRIS P1 TSL 1 (best) BASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 PTPRN-202ENST00000409251 3622 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 CCNA1-204ENST00000630422 1751 ntAPPRIS P1 TSL 2 BASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 CHIA-206ENST00000430615 1320 ntTSL 1 (best) BASIC12.72□□□□□ -0.37
AMBRA1Q9C0C7 UBFD1-207ENST00000567212 4727 ntAPPRIS ALT2 TSL 2 BASIC12.72□□□□□ -0.37
Retrieved 100 of 98,524 protein–RNA pairs in 53 ms