Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 LINC02205-201ENST00000559752 239 ntTSL 5 BASIC16■□□□□ 0.15
HMGB1P09429 PRKXP1-201ENST00000561423 1122 ntBASIC16■□□□□ 0.15
HMGB1P09429 AC074050.2-201ENST00000563338 538 ntTSL 3 BASIC16■□□□□ 0.15
HMGB1P09429 RN7SL470P-201ENST00000583069 259 ntBASIC16■□□□□ 0.15
HMGB1P09429 LINC01224-201ENST00000593573 798 ntTSL 4 BASIC16■□□□□ 0.15
HMGB1P09429 AC026304.1-201ENST00000597953 561 ntBASIC16■□□□□ 0.15
HMGB1P09429 AC007881.3-201ENST00000608897 607 ntBASIC16■□□□□ 0.15
HMGB1P09429 HIST1H3F-201ENST00000618052 411 ntAPPRIS P1 BASIC16■□□□□ 0.15
HMGB1P09429 ABCB9-203ENST00000346530 3399 ntTSL 5 BASIC16■□□□□ 0.15
HMGB1P09429 IWS1-201ENST00000295321 2958 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HMGB1P09429 DPP3-209ENST00000531863 2974 ntTSL 1 (best) BASIC16■□□□□ 0.15
HMGB1P09429 TXNDC9-201ENST00000264255 1637 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HMGB1P09429 AL031719.1-201ENST00000623365 2587 ntBASIC16■□□□□ 0.15
HMGB1P09429 LTA-213ENST00000418386 1422 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HMGB1P09429 RPS6KC1-206ENST00000543354 4082 ntTSL 1 (best) BASIC16■□□□□ 0.15
HMGB1P09429 SIAE-201ENST00000263593 5583 ntAPPRIS P3 TSL 1 (best) BASIC16■□□□□ 0.15
HMGB1P09429 ABCA17P-202ENST00000469908 4188 ntTSL 1 (best) BASIC16■□□□□ 0.15
HMGB1P09429 FADS1-206ENST00000460649 1559 ntTSL 2 BASIC16■□□□□ 0.15
HMGB1P09429 PJA1-203ENST00000374583 2692 ntAPPRIS P4 BASIC16■□□□□ 0.15
HMGB1P09429 ANKMY1-206ENST00000401804 3232 ntAPPRIS ALT2 TSL 1 (best) BASIC16■□□□□ 0.15
HMGB1P09429 NXPE3-201ENST00000273347 3941 ntAPPRIS P1 TSL 1 (best) BASIC16■□□□□ 0.15
HMGB1P09429 SERPING1-202ENST00000340687 1719 ntTSL 5 BASIC15.99■□□□□ 0.15
HMGB1P09429 NEK3-210ENST00000620675 2072 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
HMGB1P09429 CPNE5-201ENST00000244751 3897 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HMGB1P09429 MAP2K6-205ENST00000589647 1512 ntTSL 5 BASIC15.99■□□□□ 0.15
HMGB1P09429 BCKDHB-201ENST00000320393 3692 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HMGB1P09429 AL450468.2-201ENST00000565955 1889 ntBASIC15.99■□□□□ 0.15
HMGB1P09429 OPA1-202ENST00000361510 6492 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
HMGB1P09429 PCDHB19P-202ENST00000625133 2914 ntBASIC15.99■□□□□ 0.15
HMGB1P09429 PKP1-203ENST00000367324 5384 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HMGB1P09429 FDFT1-214ENST00000528812 2013 ntTSL 2 BASIC15.99■□□□□ 0.15
HMGB1P09429 Z82195.2-202ENST00000458525 1646 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
HMGB1P09429 POLR2G-201ENST00000301788 827 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HMGB1P09429 MRPL19-201ENST00000358788 693 ntTSL 5 BASIC15.99■□□□□ 0.15
HMGB1P09429 CD300LG-203ENST00000377203 1060 ntAPPRIS ALT2 TSL 2 BASIC15.99■□□□□ 0.15
HMGB1P09429 CHTF8-202ENST00000398235 1073 ntAPPRIS P1 TSL 2 BASIC15.99■□□□□ 0.15
HMGB1P09429 HIST2H2BA-201ENST00000412169 381 ntBASIC15.99■□□□□ 0.15
HMGB1P09429 FTCDNL1-203ENST00000420922 772 ntAPPRIS P1 TSL 5 BASIC15.99■□□□□ 0.15
HMGB1P09429 AL139246.4-201ENST00000442305 514 ntTSL 3 BASIC15.99■□□□□ 0.15
HMGB1P09429 NOC2LP1-201ENST00000450578 752 ntBASIC15.99■□□□□ 0.15
HMGB1P09429 AC074194.1-201ENST00000505025 622 ntTSL 4 BASIC15.99■□□□□ 0.15
HMGB1P09429 WSPAR-201ENST00000513561 683 ntTSL 3 BASIC15.99■□□□□ 0.15
HMGB1P09429 AC026583.1-201ENST00000561310 569 ntTSL 4 BASIC15.99■□□□□ 0.15
HMGB1P09429 MT3-202ENST00000561640 514 ntTSL 3 BASIC15.99■□□□□ 0.15
HMGB1P09429 TMEM202-AS1-201ENST00000562573 723 ntTSL 3 BASIC15.99■□□□□ 0.15
HMGB1P09429 NFATC2IP-206ENST00000568148 1157 ntTSL 2 BASIC15.99■□□□□ 0.15
HMGB1P09429 AC011472.1-201ENST00000588634 569 ntTSL 4 BASIC15.99■□□□□ 0.15
HMGB1P09429 PRR3-201ENST00000376557 1797 ntTSL 2 BASIC15.99■□□□□ 0.15
HMGB1P09429 HIPK1-205ENST00000369558 8157 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HMGB1P09429 AC104590.1-202ENST00000558368 1921 ntBASIC15.99■□□□□ 0.15
HMGB1P09429 GOLGA3-201ENST00000204726 9252 ntAPPRIS P3 TSL 5 BASIC15.99■□□□□ 0.15
HMGB1P09429 MAGI1-218ENST00000621418 6225 ntTSL 1 (best) BASIC15.99■□□□□ 0.15
HMGB1P09429 HCFC2-201ENST00000229330 5734 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HMGB1P09429 UBA5-202ENST00000356232 3705 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HMGB1P09429 GK-203ENST00000378943 3707 ntAPPRIS ALT1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HMGB1P09429 BRPF3-201ENST00000339717 4820 ntTSL 5 BASIC15.99■□□□□ 0.15
HMGB1P09429 PLA2G3-201ENST00000215885 2697 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HMGB1P09429 MEG8-221ENST00000636391 2155 ntTSL 5 BASIC15.99■□□□□ 0.15
HMGB1P09429 DISC1-221ENST00000620189 6689 ntAPPRIS ALT2 TSL 5 BASIC15.99■□□□□ 0.15
HMGB1P09429 NUP133-201ENST00000261396 5207 ntAPPRIS P1 TSL 1 (best) BASIC15.99■□□□□ 0.15
HMGB1P09429 MATN1-AS1-201ENST00000414532 3925 ntTSL 2 BASIC15.99■□□□□ 0.15
HMGB1P09429 PCK2-208ENST00000559250 1804 ntTSL 5 BASIC15.98■□□□□ 0.15
HMGB1P09429 TRMT1-202ENST00000357720 2142 ntAPPRIS P3 TSL 2 BASIC15.98■□□□□ 0.15
HMGB1P09429 TMEM56-RWDD3-202ENST00000604534 1491 ntAPPRIS P1 TSL 2 BASIC15.98■□□□□ 0.15
HMGB1P09429 Z82170.1-201ENST00000625081 3192 ntBASIC15.98■□□□□ 0.15
HMGB1P09429 IL10-202ENST00000423557 1630 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
HMGB1P09429 FGD4-203ENST00000472289 1629 ntTSL 2 BASIC15.98■□□□□ 0.15
HMGB1P09429 BMF-201ENST00000354670 4687 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
HMGB1P09429 LRSAM1-201ENST00000300417 3146 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
HMGB1P09429 FAM219A-201ENST00000297620 3588 ntAPPRIS P3 TSL 2 BASIC15.98■□□□□ 0.15
HMGB1P09429 GTF2IRD2-201ENST00000451013 3558 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
HMGB1P09429 LYN-204ENST00000520220 5808 ntAPPRIS ALT1 TSL 1 (best) BASIC15.98■□□□□ 0.15
HMGB1P09429 CDCA7L-201ENST00000356195 2915 ntTSL 2 BASIC15.98■□□□□ 0.15
HMGB1P09429 CITED1-202ENST00000373619 886 ntAPPRIS P3 TSL 1 (best) BASIC15.98■□□□□ 0.15
HMGB1P09429 KLC4-203ENST00000394056 2770 ntAPPRIS ALT2 TSL 2 BASIC15.98■□□□□ 0.15
HMGB1P09429 ARNTL-202ENST00000401424 2788 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
HMGB1P09429 CRYBB3-202ENST00000404334 601 ntTSL 3 BASIC15.98■□□□□ 0.15
HMGB1P09429 ESPNL-202ENST00000409169 4441 ntTSL 5 BASIC15.98■□□□□ 0.15
HMGB1P09429 AL591242.1-203ENST00000434329 374 ntTSL 3 BASIC15.98■□□□□ 0.15
HMGB1P09429 FGFR3P1-201ENST00000449999 601 ntBASIC15.98■□□□□ 0.15
HMGB1P09429 GUSBP11-206ENST00000455485 3816 ntTSL 2 BASIC15.98■□□□□ 0.15
HMGB1P09429 C9orf135-205ENST00000527647 748 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
HMGB1P09429 EIF1AD-211ENST00000533544 965 ntAPPRIS P1 TSL 3 BASIC15.98■□□□□ 0.15
HMGB1P09429 AC023825.2-201ENST00000562970 672 ntTSL 2 BASIC15.98■□□□□ 0.15
HMGB1P09429 MIR3180-2-201ENST00000581748 88 ntBASIC15.98■□□□□ 0.15
HMGB1P09429 AC008763.2-203ENST00000595866 762 ntAPPRIS ALT2 TSL 5 BASIC15.98■□□□□ 0.15
HMGB1P09429 ASNSD1-206ENST00000607062 968 ntTSL 5 BASIC15.98■□□□□ 0.15
HMGB1P09429 AC092171.5-201ENST00000608012 942 ntBASIC15.98■□□□□ 0.15
HMGB1P09429 AP000356.3-203ENST00000614808 601 ntTSL 3 BASIC15.98■□□□□ 0.15
HMGB1P09429 HELLS-212ENST00000630929 400 ntTSL 5 BASIC15.98■□□□□ 0.15
HMGB1P09429 AXIN2-209ENST00000618960 4060 ntTSL 5 BASIC15.98■□□□□ 0.15
HMGB1P09429 IKZF1-206ENST00000359197 3487 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
HMGB1P09429 ITGB2-205ENST00000397850 3178 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
HMGB1P09429 AC098936.1-201ENST00000442318 2885 ntTSL 2 BASIC15.98■□□□□ 0.15
HMGB1P09429 ZNF568-201ENST00000333987 2441 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
HMGB1P09429 TBC1D3P1-201ENST00000590047 1693 ntBASIC15.98■□□□□ 0.15
HMGB1P09429 PLA2G4B-201ENST00000452633 2985 ntAPPRIS P1 TSL 5 BASIC15.98■□□□□ 0.15
HMGB1P09429 BCL2L13-206ENST00000399782 1381 ntAPPRIS ALT2 TSL 1 (best) BASIC15.98■□□□□ 0.15
HMGB1P09429 HNRNPDL-207ENST00000614627 3968 ntTSL 1 (best) BASIC15.98■□□□□ 0.15
HMGB1P09429 TTC4-201ENST00000371281 2395 ntAPPRIS P1 TSL 1 (best) BASIC15.98■□□□□ 0.15
Retrieved 100 of 98,524 protein–RNA pairs in 42.6 ms