Protein–RNA interactions for Protein: Q9UBI1

COMMD3, COMM domain-containing protein 3, humanhuman

Predictions only

Length 195 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD3Q9UBI1 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC19.52■□□□□ 0.72
COMMD3Q9UBI1 LINC01123-202ENST00000419296 2436 ntTSL 2 BASIC19.52■□□□□ 0.72
COMMD3Q9UBI1 ACHE-201ENST00000241069 2172 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
COMMD3Q9UBI1 AC073130.3-201ENST00000624389 2278 ntBASIC19.52■□□□□ 0.72
COMMD3Q9UBI1 CD63-202ENST00000420846 981 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
COMMD3Q9UBI1 CR559946.2-201ENST00000623684 991 ntBASIC19.52■□□□□ 0.72
COMMD3Q9UBI1 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC19.52■□□□□ 0.72
COMMD3Q9UBI1 LINC01970-201ENST00000581489 1810 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
COMMD3Q9UBI1 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
COMMD3Q9UBI1 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
COMMD3Q9UBI1 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
COMMD3Q9UBI1 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
COMMD3Q9UBI1 AC080038.3-201ENST00000623346 1952 ntBASIC19.52■□□□□ 0.71
COMMD3Q9UBI1 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COMMD3Q9UBI1 RPS6KL1-216ENST00000557413 2425 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
COMMD3Q9UBI1 ARHGDIG-201ENST00000219409 949 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COMMD3Q9UBI1 LINC01918-201ENST00000436841 797 ntTSL 2 BASIC19.51■□□□□ 0.71
COMMD3Q9UBI1 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC19.51■□□□□ 0.71
COMMD3Q9UBI1 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
COMMD3Q9UBI1 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
COMMD3Q9UBI1 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC19.51■□□□□ 0.71
COMMD3Q9UBI1 TFG-201ENST00000240851 1978 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
COMMD3Q9UBI1 CCDC102A-201ENST00000258214 2463 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
COMMD3Q9UBI1 SSBP3-216ENST00000610401 3168 ntTSL 5 BASIC19.51■□□□□ 0.71
COMMD3Q9UBI1 EI24-204ENST00000527235 1625 ntTSL 5 BASIC19.51■□□□□ 0.71
COMMD3Q9UBI1 AL022069.1-201ENST00000568025 1636 ntBASIC19.51■□□□□ 0.71
COMMD3Q9UBI1 CDKN1C-202ENST00000414822 2051 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
COMMD3Q9UBI1 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COMMD3Q9UBI1 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC19.5■□□□□ 0.71
COMMD3Q9UBI1 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
COMMD3Q9UBI1 CERKL-205ENST00000409440 2425 ntTSL 2 BASIC19.5■□□□□ 0.71
COMMD3Q9UBI1 DYRK3-202ENST00000367108 2218 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
COMMD3Q9UBI1 HSD17B12-202ENST00000395700 994 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
COMMD3Q9UBI1 MDFIC-203ENST00000423503 474 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
COMMD3Q9UBI1 AC008105.2-203ENST00000591361 550 ntTSL 4 BASIC19.5■□□□□ 0.71
COMMD3Q9UBI1 IGSF21-201ENST00000251296 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COMMD3Q9UBI1 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC19.5■□□□□ 0.71
COMMD3Q9UBI1 UFD1-201ENST00000263202 1814 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
COMMD3Q9UBI1 DUX4-203ENST00000565211 1710 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
COMMD3Q9UBI1 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
COMMD3Q9UBI1 OSCAR-211ENST00000617140 1547 ntAPPRIS ALT2 TSL 5 BASIC19.5■□□□□ 0.71
COMMD3Q9UBI1 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
COMMD3Q9UBI1 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
COMMD3Q9UBI1 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COMMD3Q9UBI1 RDX-204ENST00000528498 2511 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
COMMD3Q9UBI1 NRL-202ENST00000396997 1517 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
COMMD3Q9UBI1 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC19.49■□□□□ 0.71
COMMD3Q9UBI1 ITGBL1-206ENST00000618057 2368 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
COMMD3Q9UBI1 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC19.49■□□□□ 0.71
COMMD3Q9UBI1 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC19.49■□□□□ 0.71
COMMD3Q9UBI1 NUTF2-201ENST00000219169 2321 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COMMD3Q9UBI1 PMS1-220ENST00000618056 1468 ntTSL 5 BASIC19.48■□□□□ 0.71
COMMD3Q9UBI1 SEPT2-205ENST00000401990 1734 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
COMMD3Q9UBI1 TMEM44-204ENST00000392432 2490 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
COMMD3Q9UBI1 MSRB1-206ENST00000622125 1363 ntAPPRIS ALT1 TSL 5 BASIC19.48■□□□□ 0.71
COMMD3Q9UBI1 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
COMMD3Q9UBI1 CCDC130-201ENST00000221554 1792 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COMMD3Q9UBI1 BCKDHB-202ENST00000356489 1514 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COMMD3Q9UBI1 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC19.48■□□□□ 0.71
COMMD3Q9UBI1 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC19.48■□□□□ 0.71
COMMD3Q9UBI1 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COMMD3Q9UBI1 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
COMMD3Q9UBI1 MGAT3-201ENST00000341184 5062 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COMMD3Q9UBI1 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
COMMD3Q9UBI1 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC19.48■□□□□ 0.71
COMMD3Q9UBI1 ORAI3-201ENST00000318663 2206 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
COMMD3Q9UBI1 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
COMMD3Q9UBI1 AP004608.1-202ENST00000533390 1863 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
COMMD3Q9UBI1 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
COMMD3Q9UBI1 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
COMMD3Q9UBI1 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC19.47■□□□□ 0.71
COMMD3Q9UBI1 ALDH1A3-203ENST00000557963 1670 ntBASIC19.47■□□□□ 0.71
COMMD3Q9UBI1 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC19.47■□□□□ 0.71
COMMD3Q9UBI1 NRL-203ENST00000397002 1976 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
COMMD3Q9UBI1 FAM168B-201ENST00000389915 944 ntAPPRIS P1 TSL 3 BASIC19.47■□□□□ 0.71
COMMD3Q9UBI1 KMT2E-AS1-201ENST00000453677 736 ntTSL 3 BASIC19.47■□□□□ 0.71
COMMD3Q9UBI1 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC19.47■□□□□ 0.71
COMMD3Q9UBI1 PDCD2-209ENST00000542896 1082 ntTSL 2 BASIC19.47■□□□□ 0.71
COMMD3Q9UBI1 CTDP1-208ENST00000613122 5866 ntAPPRIS P3 TSL 1 (best) BASIC19.47■□□□□ 0.71
COMMD3Q9UBI1 TPCN2-209ENST00000637504 2736 ntTSL 5 BASIC19.47■□□□□ 0.71
COMMD3Q9UBI1 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC19.47■□□□□ 0.71
COMMD3Q9UBI1 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC19.47■□□□□ 0.71
COMMD3Q9UBI1 GRK3-203ENST00000619906 2873 ntTSL 5 BASIC19.46■□□□□ 0.71
COMMD3Q9UBI1 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC19.46■□□□□ 0.71
COMMD3Q9UBI1 ZNF707-201ENST00000358656 2183 ntAPPRIS P1 TSL 2 BASIC19.46■□□□□ 0.71
COMMD3Q9UBI1 PARL-202ENST00000317096 1414 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COMMD3Q9UBI1 SERINC5-203ENST00000509193 1441 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
COMMD3Q9UBI1 EPN1-201ENST00000085079 2355 ntTSL 1 (best) BASIC19.46■□□□□ 0.71
COMMD3Q9UBI1 METRNL-202ENST00000570778 967 ntTSL 5 BASIC19.46■□□□□ 0.71
COMMD3Q9UBI1 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC19.46■□□□□ 0.71
COMMD3Q9UBI1 RUNX2-211ENST00000625924 1458 ntAPPRIS ALT2 TSL 1 (best) BASIC19.46■□□□□ 0.71
COMMD3Q9UBI1 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COMMD3Q9UBI1 COCH-201ENST00000216361 2397 ntAPPRIS P1 TSL 1 (best) BASIC19.46■□□□□ 0.71
COMMD3Q9UBI1 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
COMMD3Q9UBI1 SIMC1-202ENST00000341199 2056 ntAPPRIS P3 TSL 2 BASIC19.45■□□□□ 0.7
COMMD3Q9UBI1 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COMMD3Q9UBI1 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.45■□□□□ 0.7
COMMD3Q9UBI1 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC19.45■□□□□ 0.7
COMMD3Q9UBI1 C19orf12-201ENST00000323670 2464 ntAPPRIS P1 TSL 2 BASIC19.45■□□□□ 0.7
COMMD3Q9UBI1 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC19.45■□□□□ 0.7
Retrieved 100 of 98,524 protein–RNA pairs in 20.4 ms