Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC22.01■■□□□ 1.11
TRIM39Q9HCM9 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC22.01■■□□□ 1.11
TRIM39Q9HCM9 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC22.01■■□□□ 1.11
TRIM39Q9HCM9 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC22■■□□□ 1.11
TRIM39Q9HCM9 DYRK3-203ENST00000367109 2163 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
TRIM39Q9HCM9 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
TRIM39Q9HCM9 EDA-201ENST00000338901 1233 ntBASIC22■■□□□ 1.11
TRIM39Q9HCM9 AP006621.1-201ENST00000532946 536 ntTSL 5 BASIC22■■□□□ 1.11
TRIM39Q9HCM9 AC009097.2-201ENST00000562763 465 ntTSL 2 BASIC22■■□□□ 1.11
TRIM39Q9HCM9 MIR4767-201ENST00000582827 78 ntBASIC22■■□□□ 1.11
TRIM39Q9HCM9 AC096887.1-203ENST00000607203 768 ntAPPRIS ALT2 TSL 5 BASIC22■■□□□ 1.11
TRIM39Q9HCM9 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC22■■□□□ 1.11
TRIM39Q9HCM9 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC22■■□□□ 1.11
TRIM39Q9HCM9 HAGHL-212ENST00000564537 1667 ntTSL 2 BASIC22■■□□□ 1.11
TRIM39Q9HCM9 SNX10-207ENST00000446848 2613 ntAPPRIS P2 TSL 1 (best) BASIC22■■□□□ 1.11
TRIM39Q9HCM9 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC22■■□□□ 1.11
TRIM39Q9HCM9 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC21.99■■□□□ 1.11
TRIM39Q9HCM9 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
TRIM39Q9HCM9 TIMM50-201ENST00000314349 1612 ntAPPRIS P2 TSL 1 (best) BASIC21.99■■□□□ 1.11
TRIM39Q9HCM9 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC21.99■■□□□ 1.11
TRIM39Q9HCM9 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC21.99■■□□□ 1.11
TRIM39Q9HCM9 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC21.99■■□□□ 1.11
TRIM39Q9HCM9 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC21.99■■□□□ 1.11
TRIM39Q9HCM9 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC21.99■■□□□ 1.11
TRIM39Q9HCM9 PTH1R-207ENST00000449590 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.99■■□□□ 1.11
TRIM39Q9HCM9 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC21.99■■□□□ 1.11
TRIM39Q9HCM9 ZBTB45-205ENST00000600990 2159 ntAPPRIS P1 TSL 5 BASIC21.99■■□□□ 1.11
TRIM39Q9HCM9 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC21.99■■□□□ 1.11
TRIM39Q9HCM9 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC21.98■■□□□ 1.11
TRIM39Q9HCM9 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
TRIM39Q9HCM9 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC21.98■■□□□ 1.11
TRIM39Q9HCM9 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
TRIM39Q9HCM9 IMPDH1-210ENST00000480861 1765 ntAPPRIS P2 TSL 2 BASIC21.98■■□□□ 1.11
TRIM39Q9HCM9 AC133637.1-201ENST00000624115 1537 ntBASIC21.98■■□□□ 1.11
TRIM39Q9HCM9 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
TRIM39Q9HCM9 FAM66C-205ENST00000456135 1216 ntTSL 5 BASIC21.98■■□□□ 1.11
TRIM39Q9HCM9 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
TRIM39Q9HCM9 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC21.98■■□□□ 1.11
TRIM39Q9HCM9 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
TRIM39Q9HCM9 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC21.98■■□□□ 1.11
TRIM39Q9HCM9 AL355001.2-201ENST00000620617 1191 ntBASIC21.98■■□□□ 1.11
TRIM39Q9HCM9 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC21.98■■□□□ 1.11
TRIM39Q9HCM9 BIN1-207ENST00000357970 2497 ntTSL 1 (best) BASIC21.98■■□□□ 1.11
TRIM39Q9HCM9 HAUS7-202ENST00000370211 1363 ntAPPRIS P2 TSL 1 (best) BASIC21.98■■□□□ 1.11
TRIM39Q9HCM9 ZNF213-208ENST00000576416 2240 ntAPPRIS P1 TSL 2 BASIC21.98■■□□□ 1.11
TRIM39Q9HCM9 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC21.97■■□□□ 1.11
TRIM39Q9HCM9 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
TRIM39Q9HCM9 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
TRIM39Q9HCM9 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC21.97■■□□□ 1.11
TRIM39Q9HCM9 C3orf80-201ENST00000326474 2718 ntAPPRIS P1 BASIC21.97■■□□□ 1.11
TRIM39Q9HCM9 DENND1B-204ENST00000367396 2177 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
TRIM39Q9HCM9 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC21.97■■□□□ 1.11
TRIM39Q9HCM9 BMP2K-204ENST00000502871 3195 ntAPPRIS P3 TSL 1 (best) BASIC21.97■■□□□ 1.11
TRIM39Q9HCM9 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC21.97■■□□□ 1.11
TRIM39Q9HCM9 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.97■■□□□ 1.11
TRIM39Q9HCM9 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
TRIM39Q9HCM9 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC21.96■■□□□ 1.11
TRIM39Q9HCM9 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC21.96■■□□□ 1.11
TRIM39Q9HCM9 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC21.96■■□□□ 1.11
TRIM39Q9HCM9 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC21.96■■□□□ 1.11
TRIM39Q9HCM9 ZDHHC16-205ENST00000370846 1280 ntTSL 3 BASIC21.96■■□□□ 1.11
TRIM39Q9HCM9 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
TRIM39Q9HCM9 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
TRIM39Q9HCM9 AL031432.3-201ENST00000607698 485 ntBASIC21.96■■□□□ 1.11
TRIM39Q9HCM9 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC21.96■■□□□ 1.11
TRIM39Q9HCM9 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC21.96■■□□□ 1.11
TRIM39Q9HCM9 SRRM2-231ENST00000630499 1207 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
TRIM39Q9HCM9 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC21.96■■□□□ 1.11
TRIM39Q9HCM9 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
TRIM39Q9HCM9 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
TRIM39Q9HCM9 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC21.96■■□□□ 1.11
TRIM39Q9HCM9 SRXN1-201ENST00000381962 2698 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
TRIM39Q9HCM9 PRSS22-201ENST00000161006 1386 ntAPPRIS P1 TSL 1 (best) BASIC21.96■■□□□ 1.11
TRIM39Q9HCM9 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC21.96■■□□□ 1.11
TRIM39Q9HCM9 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.11
TRIM39Q9HCM9 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
TRIM39Q9HCM9 KREMEN2-204ENST00000572045 2339 ntAPPRIS ALT2 TSL 1 (best) BASIC21.95■■□□□ 1.1
TRIM39Q9HCM9 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
TRIM39Q9HCM9 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
TRIM39Q9HCM9 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
TRIM39Q9HCM9 SUDS3P1-201ENST00000505831 966 ntBASIC21.95■■□□□ 1.1
TRIM39Q9HCM9 GRAMD4P4-201ENST00000613563 1115 ntBASIC21.95■■□□□ 1.1
TRIM39Q9HCM9 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC21.95■■□□□ 1.1
TRIM39Q9HCM9 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC21.95■■□□□ 1.1
TRIM39Q9HCM9 LLGL2-202ENST00000375227 1374 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
TRIM39Q9HCM9 TRAP1-202ENST00000538171 2052 ntTSL 2 BASIC21.95■■□□□ 1.1
TRIM39Q9HCM9 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
TRIM39Q9HCM9 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC21.95■■□□□ 1.1
TRIM39Q9HCM9 GFOD1-204ENST00000603223 2388 ntTSL 2 BASIC21.95■■□□□ 1.1
TRIM39Q9HCM9 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC21.95■■□□□ 1.1
TRIM39Q9HCM9 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC21.95■■□□□ 1.1
TRIM39Q9HCM9 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC21.94■■□□□ 1.1
TRIM39Q9HCM9 SAMD4B-208ENST00000598913 2877 ntAPPRIS ALT1 TSL 1 (best) BASIC21.94■■□□□ 1.1
TRIM39Q9HCM9 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
TRIM39Q9HCM9 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC21.94■■□□□ 1.1
TRIM39Q9HCM9 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.94■■□□□ 1.1
TRIM39Q9HCM9 SLC12A2-201ENST00000262461 6885 ntAPPRIS P3 TSL 1 (best) BASIC21.94■■□□□ 1.1
TRIM39Q9HCM9 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC21.94■■□□□ 1.1
TRIM39Q9HCM9 HRH3-202ENST00000340177 2659 ntAPPRIS P2 TSL 1 (best) BASIC21.94■■□□□ 1.1
TRIM39Q9HCM9 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC21.94■■□□□ 1.1
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms