Protein–RNA interactions for Protein: Q96B54

ZNF428, Zinc finger protein 428, humanhuman

Predictions only

Length 188 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF428Q96B54 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
ZNF428Q96B54 POLD2-207ENST00000452185 1659 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
ZNF428Q96B54 PRR35-201ENST00000409413 2216 ntAPPRIS P1 TSL 1 (best) BASIC28.69■■■□□ 2.18
ZNF428Q96B54 IGF2-AS-201ENST00000381361 2063 ntTSL 2 BASIC28.68■■■□□ 2.18
ZNF428Q96B54 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC28.68■■■□□ 2.18
ZNF428Q96B54 PTCHD3P2-201ENST00000424937 1205 ntBASIC28.68■■■□□ 2.18
ZNF428Q96B54 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC28.68■■■□□ 2.18
ZNF428Q96B54 AL136967.2-201ENST00000623968 743 ntBASIC28.68■■■□□ 2.18
ZNF428Q96B54 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC28.68■■■□□ 2.18
ZNF428Q96B54 NKX6-3-202ENST00000524115 1683 ntTSL 2 BASIC28.67■■■□□ 2.18
ZNF428Q96B54 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC28.67■■■□□ 2.18
ZNF428Q96B54 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC28.67■■■□□ 2.18
ZNF428Q96B54 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC28.67■■■□□ 2.18
ZNF428Q96B54 LAMTOR1-201ENST00000278671 1179 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
ZNF428Q96B54 LEFTY1-201ENST00000272134 1626 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
ZNF428Q96B54 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC28.67■■■□□ 2.18
ZNF428Q96B54 CASK-201ENST00000378154 2494 ntTSL 5 BASIC28.67■■■□□ 2.18
ZNF428Q96B54 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC28.67■■■□□ 2.18
ZNF428Q96B54 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
ZNF428Q96B54 FMR1-AS1-201ENST00000594922 2005 ntTSL 1 (best) BASIC28.67■■■□□ 2.18
ZNF428Q96B54 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC28.67■■■□□ 2.18
ZNF428Q96B54 C1orf122-202ENST00000373043 2229 ntAPPRIS ALT2 TSL 1 (best) BASIC28.66■■■□□ 2.18
ZNF428Q96B54 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC28.66■■■□□ 2.18
ZNF428Q96B54 FAIM-203ENST00000393034 927 ntAPPRIS P3 TSL 2 BASIC28.66■■■□□ 2.18
ZNF428Q96B54 PTMA-205ENST00000410064 814 ntTSL 2 BASIC28.66■■■□□ 2.18
ZNF428Q96B54 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC28.66■■■□□ 2.18
ZNF428Q96B54 CAPNS1-205ENST00000588780 1035 ntAPPRIS ALT2 TSL 5 BASIC28.66■■■□□ 2.18
ZNF428Q96B54 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC28.66■■■□□ 2.18
ZNF428Q96B54 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC28.66■■■□□ 2.18
ZNF428Q96B54 PEX5-205ENST00000420616 2477 ntAPPRIS P1 TSL 1 (best) BASIC28.66■■■□□ 2.18
ZNF428Q96B54 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
ZNF428Q96B54 ERF-201ENST00000222329 2698 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
ZNF428Q96B54 AC105265.2-201ENST00000467189 838 ntBASIC28.65■■■□□ 2.18
ZNF428Q96B54 AP001330.3-201ENST00000520123 633 ntBASIC28.65■■■□□ 2.18
ZNF428Q96B54 ARFIP2-205ENST00000525235 852 ntTSL 2 BASIC28.65■■■□□ 2.18
ZNF428Q96B54 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC28.65■■■□□ 2.18
ZNF428Q96B54 AL499627.2-201ENST00000606283 725 ntBASIC28.65■■■□□ 2.18
ZNF428Q96B54 AC092171.4-201ENST00000609130 632 ntBASIC28.65■■■□□ 2.18
ZNF428Q96B54 AL355001.2-201ENST00000620617 1191 ntBASIC28.65■■■□□ 2.18
ZNF428Q96B54 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC28.65■■■□□ 2.18
ZNF428Q96B54 PEX10-204ENST00000507596 1941 ntAPPRIS ALT1 TSL 5 BASIC28.65■■■□□ 2.18
ZNF428Q96B54 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC28.65■■■□□ 2.18
ZNF428Q96B54 GPIHBP1-201ENST00000622500 2282 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
ZNF428Q96B54 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
ZNF428Q96B54 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC28.64■■■□□ 2.18
ZNF428Q96B54 KBTBD13-201ENST00000432196 1377 ntAPPRIS P1 BASIC28.64■■■□□ 2.18
ZNF428Q96B54 PCK2-201ENST00000216780 2357 ntAPPRIS P1 TSL 1 (best) BASIC28.64■■■□□ 2.18
ZNF428Q96B54 C21orf2-202ENST00000339818 2233 ntAPPRIS P3 TSL 1 (best) BASIC28.64■■■□□ 2.18
ZNF428Q96B54 FOXB2-201ENST00000376708 1299 ntAPPRIS P1 BASIC28.64■■■□□ 2.18
ZNF428Q96B54 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC28.64■■■□□ 2.18
ZNF428Q96B54 CDKN2A-210ENST00000530628 748 ntAPPRIS P1 TSL 5 BASIC28.64■■■□□ 2.18
ZNF428Q96B54 AC009086.3-201ENST00000623486 1008 ntBASIC28.64■■■□□ 2.18
ZNF428Q96B54 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC28.63■■■□□ 2.17
ZNF428Q96B54 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
ZNF428Q96B54 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
ZNF428Q96B54 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC28.63■■■□□ 2.17
ZNF428Q96B54 AC011498.4-201ENST00000586020 1803 ntAPPRIS P1 TSL 2 BASIC28.63■■■□□ 2.17
ZNF428Q96B54 LENG1-201ENST00000222224 1542 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
ZNF428Q96B54 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC28.63■■■□□ 2.17
ZNF428Q96B54 CPNE2-202ENST00000535318 2316 ntAPPRIS P1 TSL 1 (best) BASIC28.63■■■□□ 2.17
ZNF428Q96B54 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC28.63■■■□□ 2.17
ZNF428Q96B54 ANKRD54-201ENST00000215941 2184 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
ZNF428Q96B54 GCA-201ENST00000233612 1694 ntTSL 2 BASIC28.62■■■□□ 2.17
ZNF428Q96B54 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
ZNF428Q96B54 PRADC1-201ENST00000258083 1083 ntAPPRIS P1 TSL 1 (best) BASIC28.62■■■□□ 2.17
ZNF428Q96B54 SYNGR3-206ENST00000618464 1213 ntTSL 1 (best) BASIC28.62■■■□□ 2.17
ZNF428Q96B54 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC28.62■■■□□ 2.17
ZNF428Q96B54 RCN2-201ENST00000320963 1750 ntTSL 5 BASIC28.62■■■□□ 2.17
ZNF428Q96B54 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC28.62■■■□□ 2.17
ZNF428Q96B54 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC28.62■■■□□ 2.17
ZNF428Q96B54 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC28.61■■■□□ 2.17
ZNF428Q96B54 GTSE1-AS1-202ENST00000623117 1518 ntBASIC28.61■■■□□ 2.17
ZNF428Q96B54 EDA-201ENST00000338901 1233 ntBASIC28.61■■■□□ 2.17
ZNF428Q96B54 LGR4-203ENST00000480977 492 ntTSL 2 BASIC28.61■■■□□ 2.17
ZNF428Q96B54 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC28.61■■■□□ 2.17
ZNF428Q96B54 AC008764.7-201ENST00000593779 1081 ntBASIC28.61■■■□□ 2.17
ZNF428Q96B54 GSX2-205ENST00000611459 1262 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
ZNF428Q96B54 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC28.61■■■□□ 2.17
ZNF428Q96B54 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC28.61■■■□□ 2.17
ZNF428Q96B54 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC28.6■■■□□ 2.17
ZNF428Q96B54 ST3GAL4-213ENST00000530591 1459 ntAPPRIS P3 TSL 1 (best) BASIC28.6■■■□□ 2.17
ZNF428Q96B54 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC28.6■■■□□ 2.17
ZNF428Q96B54 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
ZNF428Q96B54 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC28.6■■■□□ 2.17
ZNF428Q96B54 CDKN2D-201ENST00000335766 1086 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
ZNF428Q96B54 HIST1H2AL-201ENST00000613174 393 ntAPPRIS P1 BASIC28.6■■■□□ 2.17
ZNF428Q96B54 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC28.6■■■□□ 2.17
ZNF428Q96B54 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC28.6■■■□□ 2.17
ZNF428Q96B54 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC28.6■■■□□ 2.17
ZNF428Q96B54 HOXD1-201ENST00000331462 1975 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
ZNF428Q96B54 ATAD3A-203ENST00000378756 2492 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
ZNF428Q96B54 THOC6-202ENST00000326266 1419 ntAPPRIS P1 TSL 1 (best) BASIC28.6■■■□□ 2.17
ZNF428Q96B54 FXYD3-201ENST00000344013 1404 ntTSL 5 BASIC28.6■■■□□ 2.17
ZNF428Q96B54 CACTIN-AS1-201ENST00000592274 1913 ntTSL 2 BASIC28.59■■■□□ 2.17
ZNF428Q96B54 MIR939-201ENST00000401314 82 ntBASIC28.59■■■□□ 2.17
ZNF428Q96B54 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC28.59■■■□□ 2.17
ZNF428Q96B54 AC010336.5-201ENST00000594308 317 ntTSL 3 BASIC28.59■■■□□ 2.17
ZNF428Q96B54 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC28.59■■■□□ 2.17
ZNF428Q96B54 ATP10A-207ENST00000619904 988 ntTSL 5 BASIC28.59■■■□□ 2.17
ZNF428Q96B54 ATP5G2-201ENST00000338662 1792 ntTSL 2 BASIC28.59■■■□□ 2.17
Retrieved 100 of 98,524 protein–RNA pairs in 11.7 ms