Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC21.28■■□□□ 1
CLHC1Q8NHS4 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC21.28■■□□□ 1
CLHC1Q8NHS4 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CLHC1Q8NHS4 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CLHC1Q8NHS4 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CLHC1Q8NHS4 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CLHC1Q8NHS4 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC21.27■■□□□ 1
CLHC1Q8NHS4 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
CLHC1Q8NHS4 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC21.27■■□□□ 1
CLHC1Q8NHS4 ODF3L2-201ENST00000315489 1604 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
CLHC1Q8NHS4 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC21.27■■□□□ 1
CLHC1Q8NHS4 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC21.27■■□□□ 1
CLHC1Q8NHS4 CELF5-201ENST00000292672 1854 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
CLHC1Q8NHS4 LINC00526-201ENST00000581067 1875 ntBASIC21.27■■□□□ 1
CLHC1Q8NHS4 YWHAZ-205ENST00000395956 2974 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
CLHC1Q8NHS4 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC21.26■□□□□ 0.99
CLHC1Q8NHS4 ADAD2-201ENST00000268624 2283 ntAPPRIS P3 TSL 2 BASIC21.26■□□□□ 0.99
CLHC1Q8NHS4 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
CLHC1Q8NHS4 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CLHC1Q8NHS4 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CLHC1Q8NHS4 RNF146-205ENST00000477776 762 ntTSL 3 BASIC21.26■□□□□ 0.99
CLHC1Q8NHS4 FAHD1-204ENST00000615972 757 ntTSL 5 BASIC21.26■□□□□ 0.99
CLHC1Q8NHS4 TMEM240-203ENST00000624426 796 ntTSL 3 BASIC21.26■□□□□ 0.99
CLHC1Q8NHS4 ASAP2-201ENST00000281419 5712 ntAPPRIS P3 TSL 1 (best) BASIC21.26■□□□□ 0.99
CLHC1Q8NHS4 FAM129C-211ENST00000600871 1822 ntAPPRIS ALT2 TSL 5 BASIC21.26■□□□□ 0.99
CLHC1Q8NHS4 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC21.26■□□□□ 0.99
CLHC1Q8NHS4 FMNL2-201ENST00000288670 5575 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CLHC1Q8NHS4 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC21.26■□□□□ 0.99
CLHC1Q8NHS4 FGF22-201ENST00000215530 1311 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
CLHC1Q8NHS4 AC005703.6-201ENST00000623265 1329 ntBASIC21.26■□□□□ 0.99
CLHC1Q8NHS4 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
CLHC1Q8NHS4 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC21.25■□□□□ 0.99
CLHC1Q8NHS4 SLC35F4-206ENST00000556826 1908 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
CLHC1Q8NHS4 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC21.25■□□□□ 0.99
CLHC1Q8NHS4 WRNIP1-204ENST00000380773 2670 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CLHC1Q8NHS4 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CLHC1Q8NHS4 SUSD3-202ENST00000375472 1195 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
CLHC1Q8NHS4 FAM72B-203ENST00000452190 748 ntTSL 3 BASIC21.25■□□□□ 0.99
CLHC1Q8NHS4 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC21.25■□□□□ 0.99
CLHC1Q8NHS4 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
CLHC1Q8NHS4 DPH1-203ENST00000570477 1747 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
CLHC1Q8NHS4 PRKACA-201ENST00000308677 2677 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CLHC1Q8NHS4 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
CLHC1Q8NHS4 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CLHC1Q8NHS4 IL15RA-204ENST00000379977 1626 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
CLHC1Q8NHS4 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC21.25■□□□□ 0.99
CLHC1Q8NHS4 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC21.25■□□□□ 0.99
CLHC1Q8NHS4 AL160276.1-201ENST00000636672 1312 ntAPPRIS P1 TSL 5 BASIC21.25■□□□□ 0.99
CLHC1Q8NHS4 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
CLHC1Q8NHS4 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CLHC1Q8NHS4 CDIPT-201ENST00000219789 2353 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CLHC1Q8NHS4 CACNG2-201ENST00000300105 2384 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CLHC1Q8NHS4 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CLHC1Q8NHS4 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CLHC1Q8NHS4 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CLHC1Q8NHS4 CLTA-206ENST00000466396 695 ntTSL 2 BASIC21.24■□□□□ 0.99
CLHC1Q8NHS4 IDI1-201ENST00000381344 2301 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CLHC1Q8NHS4 RBM42-206ENST00000592202 1469 ntTSL 5 BASIC21.24■□□□□ 0.99
CLHC1Q8NHS4 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC21.24■□□□□ 0.99
CLHC1Q8NHS4 PNRC1-201ENST00000336032 2065 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
CLHC1Q8NHS4 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
CLHC1Q8NHS4 C19orf68-201ENST00000328759 2277 ntAPPRIS ALT2 TSL 1 (best) BASIC21.24■□□□□ 0.99
CLHC1Q8NHS4 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC21.23■□□□□ 0.99
CLHC1Q8NHS4 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CLHC1Q8NHS4 WRNIP1-203ENST00000380771 2595 ntTSL 1 (best) BASIC21.23■□□□□ 0.99
CLHC1Q8NHS4 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC21.23■□□□□ 0.99
CLHC1Q8NHS4 TMEM159-201ENST00000233047 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CLHC1Q8NHS4 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CLHC1Q8NHS4 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CLHC1Q8NHS4 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC21.23■□□□□ 0.99
CLHC1Q8NHS4 RARRES2P1-201ENST00000474487 481 ntBASIC21.23■□□□□ 0.99
CLHC1Q8NHS4 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CLHC1Q8NHS4 MIR6722-201ENST00000617286 78 ntBASIC21.23■□□□□ 0.99
CLHC1Q8NHS4 HNRNPUL1-222ENST00000617774 451 ntTSL 5 BASIC21.23■□□□□ 0.99
CLHC1Q8NHS4 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC21.23■□□□□ 0.99
CLHC1Q8NHS4 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CLHC1Q8NHS4 HSD11B1L-217ENST00000581521 1884 ntAPPRIS P3 TSL 5 BASIC21.23■□□□□ 0.99
CLHC1Q8NHS4 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CLHC1Q8NHS4 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC21.23■□□□□ 0.99
CLHC1Q8NHS4 ECEL1P1-201ENST00000373592 1742 ntBASIC21.23■□□□□ 0.99
CLHC1Q8NHS4 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC21.23■□□□□ 0.99
CLHC1Q8NHS4 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CLHC1Q8NHS4 DMRT1-201ENST00000382276 2222 ntAPPRIS P1 TSL 1 (best) BASIC21.23■□□□□ 0.99
CLHC1Q8NHS4 ASPSCR1-202ENST00000306739 1843 ntAPPRIS P3 TSL 1 (best) BASIC21.22■□□□□ 0.99
CLHC1Q8NHS4 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC21.22■□□□□ 0.99
CLHC1Q8NHS4 ZNF503-AS2-202ENST00000466942 1430 ntTSL 2 BASIC21.22■□□□□ 0.99
CLHC1Q8NHS4 WRAP73-201ENST00000270708 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CLHC1Q8NHS4 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CLHC1Q8NHS4 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CLHC1Q8NHS4 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC21.22■□□□□ 0.99
CLHC1Q8NHS4 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC21.22■□□□□ 0.99
CLHC1Q8NHS4 PRMT5-228ENST00000627278 129 ntTSL 5 BASIC21.22■□□□□ 0.99
CLHC1Q8NHS4 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC21.22■□□□□ 0.99
CLHC1Q8NHS4 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
CLHC1Q8NHS4 PTPN13-205ENST00000502971 1708 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CLHC1Q8NHS4 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC21.21■□□□□ 0.99
CLHC1Q8NHS4 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC21.21■□□□□ 0.99
CLHC1Q8NHS4 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC21.21■□□□□ 0.99
CLHC1Q8NHS4 LSM7-204ENST00000587502 575 ntTSL 1 (best) BASIC21.21■□□□□ 0.99
CLHC1Q8NHS4 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 19.4 ms