Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 FAM20B-201ENST00000263733 5984 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CLRN3Q8NCR9 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CLRN3Q8NCR9 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC17.75■□□□□ 0.43
CLRN3Q8NCR9 MEF2A-202ENST00000354410 5824 ntAPPRIS P3 TSL 1 (best) BASIC17.75■□□□□ 0.43
CLRN3Q8NCR9 ARNTL-203ENST00000403290 2746 ntAPPRIS ALT1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CLRN3Q8NCR9 DCDC2C-201ENST00000399143 1476 ntAPPRIS P1 TSL 5 BASIC17.75■□□□□ 0.43
CLRN3Q8NCR9 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC17.75■□□□□ 0.43
CLRN3Q8NCR9 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CLRN3Q8NCR9 MANEAL-203ENST00000397631 2327 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
CLRN3Q8NCR9 NKX2-1-202ENST00000498187 2338 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CLRN3Q8NCR9 ZNF692-204ENST00000451251 2065 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
CLRN3Q8NCR9 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC17.75■□□□□ 0.43
CLRN3Q8NCR9 WNT10B-202ENST00000403957 1817 ntTSL 5 BASIC17.75■□□□□ 0.43
CLRN3Q8NCR9 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CLRN3Q8NCR9 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC17.74■□□□□ 0.43
CLRN3Q8NCR9 SOCS2-201ENST00000340600 2761 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CLRN3Q8NCR9 T-202ENST00000366871 2250 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CLRN3Q8NCR9 NAGPA-202ENST00000381955 2100 ntTSL 5 BASIC17.74■□□□□ 0.43
CLRN3Q8NCR9 OSR2-203ENST00000457907 2126 ntTSL 2 BASIC17.74■□□□□ 0.43
CLRN3Q8NCR9 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC17.74■□□□□ 0.43
CLRN3Q8NCR9 GAS2L1-206ENST00000610653 2238 ntTSL 1 (best) BASIC17.74■□□□□ 0.43
CLRN3Q8NCR9 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC17.74■□□□□ 0.43
CLRN3Q8NCR9 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC17.74■□□□□ 0.43
CLRN3Q8NCR9 ITGBL1-202ENST00000376180 2494 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CLRN3Q8NCR9 RPS6KA2-201ENST00000265678 5824 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CLRN3Q8NCR9 STX5-201ENST00000294179 1794 ntAPPRIS P1 TSL 1 (best) BASIC17.74■□□□□ 0.43
CLRN3Q8NCR9 RFXAP-201ENST00000255476 2304 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CLRN3Q8NCR9 KREMEN2-201ENST00000303746 2326 ntAPPRIS P4 TSL 1 (best) BASIC17.73■□□□□ 0.43
CLRN3Q8NCR9 ZFP69-202ENST00000372706 2871 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CLRN3Q8NCR9 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC17.73■□□□□ 0.43
CLRN3Q8NCR9 GNAS-201ENST00000265620 1866 ntAPPRIS P3 TSL 1 (best) BASIC17.73■□□□□ 0.43
CLRN3Q8NCR9 MSANTD3-207ENST00000622639 1748 ntAPPRIS P1 TSL 3 BASIC17.73■□□□□ 0.43
CLRN3Q8NCR9 CCDC34-202ENST00000328697 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC17.73■□□□□ 0.43
CLRN3Q8NCR9 FGF3-201ENST00000334134 892 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CLRN3Q8NCR9 GSX2-202ENST00000503800 1181 ntTSL 5 BASIC17.73■□□□□ 0.43
CLRN3Q8NCR9 AC136428.2-201ENST00000563187 214 ntBASIC17.73■□□□□ 0.43
CLRN3Q8NCR9 PABPC1L2A-201ENST00000373519 2237 ntAPPRIS P1 BASIC17.73■□□□□ 0.43
CLRN3Q8NCR9 AC087289.5-201ENST00000586076 3175 ntBASIC17.73■□□□□ 0.43
CLRN3Q8NCR9 SMAD1-201ENST00000302085 1966 ntAPPRIS P1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CLRN3Q8NCR9 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC17.73■□□□□ 0.43
CLRN3Q8NCR9 LETM1P2-201ENST00000597330 2178 ntBASIC17.73■□□□□ 0.43
CLRN3Q8NCR9 CORO1B-202ENST00000393893 1931 ntAPPRIS P1 TSL 5 BASIC17.72■□□□□ 0.43
CLRN3Q8NCR9 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CLRN3Q8NCR9 DNASE1L2-203ENST00000564065 2194 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CLRN3Q8NCR9 AC139530.1-201ENST00000575312 1977 ntBASIC17.72■□□□□ 0.43
CLRN3Q8NCR9 LRRC14B-201ENST00000328278 1573 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CLRN3Q8NCR9 LGI3-202ENST00000424267 3114 ntTSL 1 (best) BASIC17.72■□□□□ 0.43
CLRN3Q8NCR9 ENTPD6-201ENST00000354989 2708 ntAPPRIS ALT2 TSL 1 (best) BASIC17.72■□□□□ 0.43
CLRN3Q8NCR9 EYA2-210ENST00000611592 2612 ntTSL 5 BASIC17.72■□□□□ 0.43
CLRN3Q8NCR9 MAFF-204ENST00000426621 2216 ntAPPRIS P1 TSL 4 BASIC17.72■□□□□ 0.43
CLRN3Q8NCR9 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CLRN3Q8NCR9 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CLRN3Q8NCR9 ADM-207ENST00000530439 1839 ntTSL 2 BASIC17.72■□□□□ 0.43
CLRN3Q8NCR9 SLC25A22-228ENST00000628067 2692 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CLRN3Q8NCR9 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC17.72■□□□□ 0.43
CLRN3Q8NCR9 GPR62-201ENST00000322241 2191 ntAPPRIS P1 BASIC17.72■□□□□ 0.43
CLRN3Q8NCR9 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.72■□□□□ 0.43
CLRN3Q8NCR9 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CLRN3Q8NCR9 SRPK3-203ENST00000370104 1753 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CLRN3Q8NCR9 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CLRN3Q8NCR9 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CLRN3Q8NCR9 GCA-201ENST00000233612 1694 ntTSL 2 BASIC17.71■□□□□ 0.43
CLRN3Q8NCR9 SOX17-201ENST00000297316 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CLRN3Q8NCR9 TAZ-201ENST00000369776 1596 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CLRN3Q8NCR9 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CLRN3Q8NCR9 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CLRN3Q8NCR9 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC17.71■□□□□ 0.43
CLRN3Q8NCR9 LSM14A-202ENST00000540746 2152 ntTSL 2 BASIC17.71■□□□□ 0.43
CLRN3Q8NCR9 AP006623.1-201ENST00000506172 2061 ntTSL 5 BASIC17.71■□□□□ 0.43
CLRN3Q8NCR9 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC17.71■□□□□ 0.43
CLRN3Q8NCR9 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC17.71■□□□□ 0.43
CLRN3Q8NCR9 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC17.71■□□□□ 0.43
CLRN3Q8NCR9 SHCBP1L-201ENST00000367547 2317 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.43
CLRN3Q8NCR9 ST3GAL4-201ENST00000227495 1790 ntAPPRIS P3 TSL 5 BASIC17.71■□□□□ 0.43
CLRN3Q8NCR9 PBX1-222ENST00000627490 1769 ntTSL 2 BASIC17.71■□□□□ 0.43
CLRN3Q8NCR9 BAALC-203ENST00000309982 2831 ntAPPRIS P1 TSL 1 (best) BASIC17.71■□□□□ 0.42
CLRN3Q8NCR9 NF2-201ENST00000334961 2020 ntTSL 1 (best) BASIC17.71■□□□□ 0.42
CLRN3Q8NCR9 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC17.71■□□□□ 0.42
CLRN3Q8NCR9 CAPN1-226ENST00000533820 3083 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLRN3Q8NCR9 PHACTR3-202ENST00000359926 2252 ntTSL 2 BASIC17.7■□□□□ 0.42
CLRN3Q8NCR9 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC17.7■□□□□ 0.42
CLRN3Q8NCR9 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC17.7■□□□□ 0.42
CLRN3Q8NCR9 HUNK-201ENST00000270112 7385 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLRN3Q8NCR9 PAIP1-201ENST00000306846 2782 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CLRN3Q8NCR9 MEIS3-204ENST00000558555 1715 ntAPPRIS ALT2 TSL 5 BASIC17.7■□□□□ 0.42
CLRN3Q8NCR9 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
CLRN3Q8NCR9 ARFRP1-214ENST00000622789 2559 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLRN3Q8NCR9 MARCH2-202ENST00000381035 1192 ntTSL 5 BASIC17.7■□□□□ 0.42
CLRN3Q8NCR9 AL133346.1-201ENST00000435287 495 ntTSL 2 BASIC17.7■□□□□ 0.42
CLRN3Q8NCR9 VPS9D1-AS1-202ENST00000562866 1753 ntTSL 2 BASIC17.7■□□□□ 0.42
CLRN3Q8NCR9 SMIM10L2A-201ENST00000417443 5230 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLRN3Q8NCR9 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLRN3Q8NCR9 MYO15B-232ENST00000610510 9195 ntAPPRIS P1 TSL 5 BASIC17.7■□□□□ 0.42
CLRN3Q8NCR9 NPHS2-202ENST00000367616 1670 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CLRN3Q8NCR9 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC17.7■□□□□ 0.42
CLRN3Q8NCR9 DNLZ-202ENST00000371739 2934 ntTSL 5 BASIC17.7■□□□□ 0.42
CLRN3Q8NCR9 AL391121.1-201ENST00000607967 1349 ntBASIC17.7■□□□□ 0.42
CLRN3Q8NCR9 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC17.7■□□□□ 0.42
CLRN3Q8NCR9 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC17.69■□□□□ 0.42
CLRN3Q8NCR9 C7orf25-205ENST00000438029 1743 ntAPPRIS P1 TSL 2 BASIC17.69■□□□□ 0.42
Retrieved 100 of 98,524 protein–RNA pairs in 16.7 ms