Protein–RNA interactions for Protein: Q6P499

NIPAL3, NIPA-like protein 3, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NIPAL3Q6P499 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC20.2■□□□□ 0.82
NIPAL3Q6P499 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
NIPAL3Q6P499 TMEM147-203ENST00000392205 767 ntTSL 2 BASIC20.2■□□□□ 0.82
NIPAL3Q6P499 CLTA-206ENST00000466396 695 ntTSL 2 BASIC20.2■□□□□ 0.82
NIPAL3Q6P499 EXOG-217ENST00000630638 197 ntTSL 5 BASIC20.2■□□□□ 0.82
NIPAL3Q6P499 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
NIPAL3Q6P499 FAM72A-202ENST00000367128 2398 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
NIPAL3Q6P499 FAM72D-201ENST00000400889 2397 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
NIPAL3Q6P499 FIZ1-201ENST00000221665 2660 ntAPPRIS P1 TSL 1 (best) BASIC20.2■□□□□ 0.82
NIPAL3Q6P499 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC20.19■□□□□ 0.82
NIPAL3Q6P499 SIGMAR1-201ENST00000277010 1656 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
NIPAL3Q6P499 MXRA7-201ENST00000355797 5661 ntAPPRIS P4 TSL 2 BASIC20.19■□□□□ 0.82
NIPAL3Q6P499 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC20.19■□□□□ 0.82
NIPAL3Q6P499 AC127496.7-201ENST00000625110 1798 ntBASIC20.19■□□□□ 0.82
NIPAL3Q6P499 FRAT1-201ENST00000371021 2649 ntAPPRIS P1 BASIC20.19■□□□□ 0.82
NIPAL3Q6P499 SOS2-201ENST00000216373 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
NIPAL3Q6P499 C9orf47-202ENST00000375850 859 ntAPPRIS ALT2 TSL 3 BASIC20.19■□□□□ 0.82
NIPAL3Q6P499 CD72-202ENST00000378430 585 ntTSL 3 BASIC20.19■□□□□ 0.82
NIPAL3Q6P499 ERRFI1-203ENST00000469499 995 ntTSL 3 BASIC20.19■□□□□ 0.82
NIPAL3Q6P499 SHMT1-202ENST00000352886 2437 ntTSL 2 BASIC20.19■□□□□ 0.82
NIPAL3Q6P499 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
NIPAL3Q6P499 KCNQ5-208ENST00000414165 6236 ntTSL 5 BASIC20.19■□□□□ 0.82
NIPAL3Q6P499 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC20.19■□□□□ 0.82
NIPAL3Q6P499 ANKS6-201ENST00000353234 7164 ntAPPRIS P1 TSL 1 (best) BASIC20.19■□□□□ 0.82
NIPAL3Q6P499 REPIN1-214ENST00000489432 2058 ntAPPRIS ALT2 TSL 2 BASIC20.18■□□□□ 0.82
NIPAL3Q6P499 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
NIPAL3Q6P499 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC20.18■□□□□ 0.82
NIPAL3Q6P499 G6PD-202ENST00000393562 2631 ntAPPRIS P3 TSL 1 (best) BASIC20.18■□□□□ 0.82
NIPAL3Q6P499 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC20.18■□□□□ 0.82
NIPAL3Q6P499 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
NIPAL3Q6P499 G6PD-211ENST00000621232 2631 ntAPPRIS ALT2 TSL 1 (best) BASIC20.18■□□□□ 0.82
NIPAL3Q6P499 U2AF2-202ENST00000450554 3022 ntAPPRIS ALT1 TSL 1 (best) BASIC20.18■□□□□ 0.82
NIPAL3Q6P499 GRM6-202ENST00000517717 2673 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
NIPAL3Q6P499 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC20.18■□□□□ 0.82
NIPAL3Q6P499 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC20.18■□□□□ 0.82
NIPAL3Q6P499 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC20.18■□□□□ 0.82
NIPAL3Q6P499 AC005703.6-201ENST00000623265 1329 ntBASIC20.18■□□□□ 0.82
NIPAL3Q6P499 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
NIPAL3Q6P499 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
NIPAL3Q6P499 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC20.18■□□□□ 0.82
NIPAL3Q6P499 UBALD1-206ENST00000590965 1462 ntTSL 2 BASIC20.18■□□□□ 0.82
NIPAL3Q6P499 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
NIPAL3Q6P499 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
NIPAL3Q6P499 AC073111.5-204ENST00000498682 1167 ntAPPRIS P1 TSL 2 BASIC20.17■□□□□ 0.82
NIPAL3Q6P499 DTWD2-204ENST00000515439 1275 ntTSL 5 BASIC20.17■□□□□ 0.82
NIPAL3Q6P499 GRAMD4P7-201ENST00000578182 1232 ntBASIC20.17■□□□□ 0.82
NIPAL3Q6P499 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
NIPAL3Q6P499 EXOSC6-201ENST00000435634 5153 ntAPPRIS P1 BASIC20.17■□□□□ 0.82
NIPAL3Q6P499 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
NIPAL3Q6P499 POLR2J2-202ENST00000358438 2065 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
NIPAL3Q6P499 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC20.17■□□□□ 0.82
NIPAL3Q6P499 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC20.17■□□□□ 0.82
NIPAL3Q6P499 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC20.17■□□□□ 0.82
NIPAL3Q6P499 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC20.17■□□□□ 0.82
NIPAL3Q6P499 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC20.16■□□□□ 0.82
NIPAL3Q6P499 FAM83D-202ENST00000619850 2361 ntAPPRIS P1 TSL 1 (best) BASIC20.16■□□□□ 0.82
NIPAL3Q6P499 AC079630.1-202ENST00000618127 1840 ntBASIC20.16■□□□□ 0.82
NIPAL3Q6P499 MSL1-203ENST00000577454 2081 ntTSL 2 BASIC20.16■□□□□ 0.82
NIPAL3Q6P499 LSM4-201ENST00000252816 986 ntTSL 2 BASIC20.16■□□□□ 0.82
NIPAL3Q6P499 TUBBP5-204ENST00000635438 565 ntTSL 4 BASIC20.16■□□□□ 0.82
NIPAL3Q6P499 NBL1-202ENST00000375136 2172 ntAPPRIS P3 TSL 1 (best) BASIC20.16■□□□□ 0.82
NIPAL3Q6P499 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC20.16■□□□□ 0.82
NIPAL3Q6P499 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC20.16■□□□□ 0.82
NIPAL3Q6P499 WDR86-201ENST00000334493 2023 ntAPPRIS P1 TSL 5 BASIC20.15■□□□□ 0.82
NIPAL3Q6P499 TFPT-201ENST00000391757 774 ntTSL 5 BASIC20.15■□□□□ 0.82
NIPAL3Q6P499 TFPT-202ENST00000391758 804 ntAPPRIS ALT2 TSL 1 (best) BASIC20.15■□□□□ 0.82
NIPAL3Q6P499 TMEM151B-201ENST00000438774 1140 ntAPPRIS ALT2 TSL 3 BASIC20.15■□□□□ 0.82
NIPAL3Q6P499 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
NIPAL3Q6P499 MIR6724-1-201ENST00000616420 92 ntBASIC20.15■□□□□ 0.82
NIPAL3Q6P499 MIR6724-2-201ENST00000616483 92 ntBASIC20.15■□□□□ 0.82
NIPAL3Q6P499 MIR6724-4-201ENST00000617390 92 ntBASIC20.15■□□□□ 0.82
NIPAL3Q6P499 MIR6724-3-201ENST00000622482 92 ntBASIC20.15■□□□□ 0.82
NIPAL3Q6P499 USF2-207ENST00000595068 1612 ntTSL 5 BASIC20.15■□□□□ 0.82
NIPAL3Q6P499 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
NIPAL3Q6P499 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC20.15■□□□□ 0.82
NIPAL3Q6P499 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
NIPAL3Q6P499 NIPA2-203ENST00000398013 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
NIPAL3Q6P499 SLC35D3-201ENST00000331858 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.15■□□□□ 0.82
NIPAL3Q6P499 PRKAR1B-211ENST00000537384 2533 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.82
NIPAL3Q6P499 PPP5C-201ENST00000012443 2109 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
NIPAL3Q6P499 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC20.14■□□□□ 0.81
NIPAL3Q6P499 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC20.14■□□□□ 0.81
NIPAL3Q6P499 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
NIPAL3Q6P499 DNAJC25-GNG10-201ENST00000374294 1448 ntAPPRIS P1 TSL 2 BASIC20.14■□□□□ 0.81
NIPAL3Q6P499 KISS1-201ENST00000367194 709 ntAPPRIS P2 TSL 1 (best) BASIC20.14■□□□□ 0.81
NIPAL3Q6P499 AC103702.2-201ENST00000433510 1270 ntTSL 2 BASIC20.14■□□□□ 0.81
NIPAL3Q6P499 UBFD1-208ENST00000567264 642 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
NIPAL3Q6P499 HAUS7-211ENST00000626181 414 ntAPPRIS ALT2 TSL 5 BASIC20.14■□□□□ 0.81
NIPAL3Q6P499 SH3GLB2-203ENST00000372564 2982 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
NIPAL3Q6P499 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC20.14■□□□□ 0.81
NIPAL3Q6P499 P4HA2-202ENST00000360568 2313 ntAPPRIS ALT1 TSL 1 (best) BASIC20.14■□□□□ 0.81
NIPAL3Q6P499 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC20.13■□□□□ 0.81
NIPAL3Q6P499 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC20.13■□□□□ 0.81
NIPAL3Q6P499 NMI-201ENST00000243346 1623 ntAPPRIS P1 TSL 1 (best) BASIC20.13■□□□□ 0.81
NIPAL3Q6P499 RAB11FIP3-201ENST00000262305 4831 ntAPPRIS P2 TSL 1 (best) BASIC20.13■□□□□ 0.81
NIPAL3Q6P499 ESRRAP2-201ENST00000418437 1549 ntBASIC20.13■□□□□ 0.81
NIPAL3Q6P499 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC20.13■□□□□ 0.81
NIPAL3Q6P499 RPP38-207ENST00000616640 1537 ntAPPRIS P1 TSL 2 BASIC20.13■□□□□ 0.81
NIPAL3Q6P499 U2AF1-202ENST00000380276 940 ntAPPRIS ALT2 TSL 1 (best) BASIC20.13■□□□□ 0.81
NIPAL3Q6P499 AL117209.1-201ENST00000560931 828 ntTSL 3 BASIC20.13■□□□□ 0.81
Retrieved 100 of 98,524 protein–RNA pairs in 18.9 ms