Protein–RNA interactions for Protein: Q6NUP7

PPP4R4, Serine/threonine-protein phosphatase 4 regulatory subunit 4, humanhuman

Predictions only

Length 873 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R4Q6NUP7 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC21.18■□□□□ 0.98
PPP4R4Q6NUP7 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC21.18■□□□□ 0.98
PPP4R4Q6NUP7 AL592295.1-201ENST00000400984 884 ntBASIC21.18■□□□□ 0.98
PPP4R4Q6NUP7 AL590094.1-201ENST00000635581 706 ntTSL 2 BASIC21.18■□□□□ 0.98
PPP4R4Q6NUP7 VDAC2-203ENST00000332211 1557 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PPP4R4Q6NUP7 RSPO1-201ENST00000356545 2621 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PPP4R4Q6NUP7 SLIT1-203ENST00000371041 1695 ntTSL 2 BASIC21.18■□□□□ 0.98
PPP4R4Q6NUP7 FMR1-201ENST00000218200 4333 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
PPP4R4Q6NUP7 HMGA2-203ENST00000393578 1993 ntAPPRIS ALT1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PPP4R4Q6NUP7 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PPP4R4Q6NUP7 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PPP4R4Q6NUP7 ANAPC4-201ENST00000315368 2685 ntAPPRIS P3 TSL 1 (best) BASIC21.17■□□□□ 0.98
PPP4R4Q6NUP7 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC21.17■□□□□ 0.98
PPP4R4Q6NUP7 CARNMT1-201ENST00000376830 1012 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
PPP4R4Q6NUP7 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
PPP4R4Q6NUP7 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC21.17■□□□□ 0.98
PPP4R4Q6NUP7 THA1P-201ENST00000590384 1145 ntBASIC21.17■□□□□ 0.98
PPP4R4Q6NUP7 AC010913.1-201ENST00000608612 420 ntTSL 2 BASIC21.17■□□□□ 0.98
PPP4R4Q6NUP7 ARL6IP4-210ENST00000453766 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
PPP4R4Q6NUP7 KCNMA1-209ENST00000372443 5059 ntAPPRIS ALT2 TSL 5 BASIC21.17■□□□□ 0.98
PPP4R4Q6NUP7 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC21.17■□□□□ 0.98
PPP4R4Q6NUP7 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC21.17■□□□□ 0.98
PPP4R4Q6NUP7 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
PPP4R4Q6NUP7 KCNN4-201ENST00000262888 2240 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PPP4R4Q6NUP7 MED17-221ENST00000639724 2317 ntTSL 5 BASIC21.17■□□□□ 0.98
PPP4R4Q6NUP7 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC21.16■□□□□ 0.98
PPP4R4Q6NUP7 CLN6-201ENST00000249806 2243 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PPP4R4Q6NUP7 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC21.16■□□□□ 0.98
PPP4R4Q6NUP7 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PPP4R4Q6NUP7 TPI1-210ENST00000613953 1460 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PPP4R4Q6NUP7 EPM2A-202ENST00000435470 1278 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PPP4R4Q6NUP7 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PPP4R4Q6NUP7 COMT-203ENST00000403184 2217 ntTSL 2 BASIC21.16■□□□□ 0.98
PPP4R4Q6NUP7 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PPP4R4Q6NUP7 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC21.15■□□□□ 0.98
PPP4R4Q6NUP7 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PPP4R4Q6NUP7 TSPAN4-203ENST00000397397 1423 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PPP4R4Q6NUP7 EGFL8-219ENST00000333845 1310 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PPP4R4Q6NUP7 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
PPP4R4Q6NUP7 FDFT1-201ENST00000220584 2176 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PPP4R4Q6NUP7 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
PPP4R4Q6NUP7 AC022616.5-201ENST00000518796 181 ntBASIC21.15■□□□□ 0.98
PPP4R4Q6NUP7 MRGPRF-AS1-203ENST00000569432 542 ntTSL 4 BASIC21.15■□□□□ 0.98
PPP4R4Q6NUP7 AL121906.1-201ENST00000606866 440 ntTSL 3 BASIC21.15■□□□□ 0.98
PPP4R4Q6NUP7 AC064853.4-201ENST00000641394 363 ntAPPRIS P1 BASIC21.15■□□□□ 0.98
PPP4R4Q6NUP7 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PPP4R4Q6NUP7 GFI1-203ENST00000427103 2693 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PPP4R4Q6NUP7 PRSS29P-202ENST00000568091 1864 ntTSL 5 BASIC21.15■□□□□ 0.98
PPP4R4Q6NUP7 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC21.15■□□□□ 0.98
PPP4R4Q6NUP7 FBXW7-202ENST00000281708 4976 ntAPPRIS P4 TSL 1 (best) BASIC21.15■□□□□ 0.98
PPP4R4Q6NUP7 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC21.15■□□□□ 0.98
PPP4R4Q6NUP7 PPP1R1B-201ENST00000254079 1845 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
PPP4R4Q6NUP7 MVD-201ENST00000301012 1823 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
PPP4R4Q6NUP7 SERP2-201ENST00000379179 784 ntAPPRIS P1 TSL 1 (best) BASIC21.14■□□□□ 0.97
PPP4R4Q6NUP7 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC21.14■□□□□ 0.97
PPP4R4Q6NUP7 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
PPP4R4Q6NUP7 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC21.14■□□□□ 0.97
PPP4R4Q6NUP7 BRWD1-202ENST00000341322 2495 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
PPP4R4Q6NUP7 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC21.14■□□□□ 0.97
PPP4R4Q6NUP7 H19-210ENST00000439725 1929 ntTSL 2 BASIC21.14■□□□□ 0.97
PPP4R4Q6NUP7 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC21.13■□□□□ 0.97
PPP4R4Q6NUP7 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC21.13■□□□□ 0.97
PPP4R4Q6NUP7 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PPP4R4Q6NUP7 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PPP4R4Q6NUP7 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC21.13■□□□□ 0.97
PPP4R4Q6NUP7 YPEL1-202ENST00000403503 466 ntTSL 3 BASIC21.13■□□□□ 0.97
PPP4R4Q6NUP7 TMPO-AS1-201ENST00000546421 738 ntTSL 5 BASIC21.13■□□□□ 0.97
PPP4R4Q6NUP7 MAP3K21-203ENST00000366624 5809 ntAPPRIS P2 TSL 1 (best) BASIC21.13■□□□□ 0.97
PPP4R4Q6NUP7 DNAJC25-201ENST00000313525 2268 ntAPPRIS P1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PPP4R4Q6NUP7 C14orf80-201ENST00000329886 1947 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
PPP4R4Q6NUP7 HNRNPD-203ENST00000353341 1585 ntAPPRIS ALT1 TSL 1 (best) BASIC21.13■□□□□ 0.97
PPP4R4Q6NUP7 MATK-202ENST00000395040 1907 ntAPPRIS ALT2 TSL 1 (best) BASIC21.13■□□□□ 0.97
PPP4R4Q6NUP7 TRIM72-202ENST00000613872 1573 ntTSL 1 (best) BASIC21.13■□□□□ 0.97
PPP4R4Q6NUP7 ZSCAN18-217ENST00000601144 2190 ntAPPRIS P3 TSL 1 (best) BASIC21.13■□□□□ 0.97
PPP4R4Q6NUP7 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PPP4R4Q6NUP7 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC21.12■□□□□ 0.97
PPP4R4Q6NUP7 SLCO3A1-202ENST00000424469 2705 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
PPP4R4Q6NUP7 CST6-201ENST00000312134 759 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PPP4R4Q6NUP7 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC21.12■□□□□ 0.97
PPP4R4Q6NUP7 TTC7A-201ENST00000319190 5157 ntAPPRIS P1 TSL 2 BASIC21.12■□□□□ 0.97
PPP4R4Q6NUP7 MRPL4-207ENST00000590669 1423 ntTSL 1 (best) BASIC21.12■□□□□ 0.97
PPP4R4Q6NUP7 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC21.12■□□□□ 0.97
PPP4R4Q6NUP7 HOXC8-201ENST00000040584 1889 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PPP4R4Q6NUP7 BOD1-202ENST00000311086 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PPP4R4Q6NUP7 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PPP4R4Q6NUP7 PTPN18-202ENST00000347849 2472 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
PPP4R4Q6NUP7 RAB20-201ENST00000267328 1518 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PPP4R4Q6NUP7 TMUB1-203ENST00000462940 1549 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PPP4R4Q6NUP7 TBC1D12-201ENST00000225235 5272 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PPP4R4Q6NUP7 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC21.11■□□□□ 0.97
PPP4R4Q6NUP7 AC009299.2-201ENST00000482477 511 ntBASIC21.11■□□□□ 0.97
PPP4R4Q6NUP7 ATP11B-209ENST00000493826 963 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
PPP4R4Q6NUP7 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC21.11■□□□□ 0.97
PPP4R4Q6NUP7 IFNGR2-202ENST00000381995 1742 ntAPPRIS ALT2 TSL 5 BASIC21.11■□□□□ 0.97
PPP4R4Q6NUP7 NFU1-203ENST00000410022 1467 ntAPPRIS P3 TSL 1 (best) BASIC21.11■□□□□ 0.97
PPP4R4Q6NUP7 SLC25A24-204ENST00000569674 2357 ntBASIC21.11■□□□□ 0.97
PPP4R4Q6NUP7 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
PPP4R4Q6NUP7 C2orf72-201ENST00000373640 3657 ntAPPRIS P1 TSL 2 BASIC21.11■□□□□ 0.97
PPP4R4Q6NUP7 AL161729.1-201ENST00000604104 1402 ntBASIC21.11■□□□□ 0.97
PPP4R4Q6NUP7 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC21.11■□□□□ 0.97
Retrieved 100 of 98,524 protein–RNA pairs in 25.5 ms