Protein–RNA interactions for Protein: P83369

LSM11, U7 snRNA-associated Sm-like protein LSm11, humanhuman

Known RBP eCLIP

Length 360 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LSM11P83369 BCS1L-212ENST00000439945 1483 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.116e-6■■■■□ 21.3
LSM11P83369 KIAA1217-206ENST00000376462 6123 ntAPPRIS ALT2 TSL 1 (best) BASIC14.21□□□□□ -0.146e-6■■■■□ 21.3
LSM11P83369 HNRNPR-204ENST00000427764 1788 ntTSL 1 (best) BASIC13.87□□□□□ -0.196e-6■■■■□ 21.3
LSM11P83369 HNRNPR-212ENST00000606561 1837 ntTSL 2 BASIC13.78□□□□□ -0.26e-6■■■■□ 21.3
LSM11P83369 BCS1L-203ENST00000392110 1525 ntAPPRIS P1 TSL 2 BASIC13.57□□□□□ -0.246e-6■■■■□ 21.3
LSM11P83369 DMPK-219ENST00000600757 3357 ntTSL 2 BASIC13.37□□□□□ -0.276e-6■■■■□ 21.3
LSM11P83369 MBD6-201ENST00000355673 4282 ntAPPRIS P1 TSL 1 (best) BASIC13.36□□□□□ -0.276e-6■■■■□ 21.3
LSM11P83369 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC13.32□□□□□ -0.286e-6■■■■□ 21.3
LSM11P83369 PRDM15-210ENST00000470586 2283 ntTSL 1 (best)13.23□□□□□ -0.296e-6■■■■□ 21.3
LSM11P83369 RTEL1-202ENST00000356810 1339 ntTSL 1 (best)13.1□□□□□ -0.316e-6■■■■□ 21.3
LSM11P83369 PRDM15-201ENST00000269844 4881 ntAPPRIS P3 TSL 1 (best) BASIC12.86□□□□□ -0.356e-6■■■■□ 21.3
LSM11P83369 PRDM15-204ENST00000433067 6124 ntTSL 512.47□□□□□ -0.416e-6■■■■□ 21.3
LSM11P83369 KIAA1217-203ENST00000376452 6052 ntAPPRIS ALT2 TSL 1 (best) BASIC12.42□□□□□ -0.426e-6■■■■□ 21.3
LSM11P83369 RTEL1-207ENST00000463361 575 ntTSL 412.15□□□□□ -0.466e-6■■■■□ 21.3
LSM11P83369 KIAA1217-211ENST00000458595 5977 ntAPPRIS ALT2 TSL 1 (best) BASIC12.14□□□□□ -0.476e-6■■■■□ 21.3
LSM11P83369 KIAA1217-209ENST00000430453 5962 ntAPPRIS ALT2 TSL 5 BASIC12.14□□□□□ -0.476e-6■■■■□ 21.3
LSM11P83369 KIAA1217-205ENST00000376456 3203 ntAPPRIS ALT2 TSL 512.13□□□□□ -0.476e-6■■■■□ 21.3
LSM11P83369 PRDM15-207ENST00000447207 4928 ntAPPRIS ALT2 TSL 5 BASIC11.87□□□□□ -0.516e-6■■■■□ 21.3
LSM11P83369 PRDM15-206ENST00000447016 4992 ntTSL 1 (best)11.79□□□□□ -0.526e-6■■■■□ 21.3
LSM11P83369 HNRNPR-205ENST00000463552 837 ntTSL 411.57□□□□□ -0.566e-6■■■■□ 21.3
LSM11P83369 HNRNPR-208ENST00000476451 814 ntTSL 411.57□□□□□ -0.566e-6■■■■□ 21.3
LSM11P83369 MBD6-205ENST00000547844 387 ntTSL 511.36□□□□□ -0.596e-6■■■■□ 21.3
LSM11P83369 PRDM15-215ENST00000495217 703 ntTSL 311.33□□□□□ -0.66e-6■■■■□ 21.3
LSM11P83369 BCS1L-218ENST00000477422 915 ntTSL 211.24□□□□□ -0.616e-6■■■■□ 21.3
LSM11P83369 HNRNPR-202ENST00000374612 2694 ntAPPRIS P3 TSL 5 BASIC11.16□□□□□ -0.626e-6■■■■□ 21.3
LSM11P83369 HNRNPR-203ENST00000374616 2691 ntAPPRIS ALT1 TSL 1 (best) BASIC11.13□□□□□ -0.636e-6■■■■□ 21.3
LSM11P83369 HNRNPR-201ENST00000302271 2629 ntAPPRIS P3 TSL 1 (best) BASIC10.88□□□□□ -0.676e-6■■■■□ 21.3
LSM11P83369 BCS1L-215ENST00000460579 985 ntTSL 310.78□□□□□ -0.686e-6■■■■□ 21.3
LSM11P83369 KIAA1217-210ENST00000438429 2589 ntAPPRIS ALT2 TSL 59.78□□□□□ -0.846e-6■■■■□ 21.3
LSM11P83369 BCS1L-207ENST00000426649 660 ntTSL 29.76□□□□□ -0.856e-6■■■■□ 21.3
LSM11P83369 BCS1L-216ENST00000465706 526 ntTSL 59.63□□□□□ -0.876e-6■■■■□ 21.3
LSM11P83369 PRDM15-202ENST00000398548 6654 ntAPPRIS ALT2 TSL 1 (best) BASIC9.23□□□□□ -0.936e-6■■■■□ 21.3
LSM11P83369 PRDM15-212ENST00000486812 7072 ntTSL 1 (best)9.17□□□□□ -0.946e-6■■■■□ 21.3
LSM11P83369 PRDM15-208ENST00000449395 6662 ntTSL 1 (best)9.17□□□□□ -0.946e-6■■■■□ 21.3
LSM11P83369 PRDM15-205ENST00000441787 6542 ntTSL 1 (best)8.97□□□□□ -0.976e-6■■■■□ 21.3
LSM11P83369 PRDM15-203ENST00000422911 6714 ntAPPRIS ALT2 TSL 1 (best) BASIC8.95□□□□□ -0.986e-6■■■■□ 21.3
LSM11P83369 HNRNPR-207ENST00000470941 560 ntTSL 48.6□□□□□ -1.036e-6■■■■□ 21.3
LSM11P83369 KIAA1217-204ENST00000376454 7381 ntAPPRIS P3 TSL 1 (best) BASIC7.84□□□□□ -1.156e-6■■■■□ 21.3
LSM11P83369 HNRNPR-210ENST00000478691 7646 ntTSL 1 (best) BASIC7.27□□□□□ -1.256e-6■■■■□ 21.3
LSM11P83369 BCS1L-211ENST00000436603 552 ntTSL 36.6□□□□□ -1.356e-6■■■■□ 21.3
LSM11P83369 KIAA1217-216ENST00000635504 568 ntTSL 45.98□□□□□ -1.456e-6■■■■□ 21.3
LSM11P83369 H2AFY-208ENST00000506218 758 ntTSL 320.89■□□□□ 0.932e-6■■■■□ 21.3
LSM11P83369 H2AFY-217ENST00000511689 2789 ntAPPRIS P4 TSL 1 (best) BASIC20.71■□□□□ 0.912e-6■■■■□ 21.3
LSM11P83369 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC20.63■□□□□ 0.892e-6■■■■□ 21.3
LSM11P83369 H2AFY-211ENST00000507868 861 ntTSL 220.63■□□□□ 0.892e-6■■■■□ 21.3
LSM11P83369 H2AFY-212ENST00000508120 536 ntTSL 319.72■□□□□ 0.752e-6■■■■□ 21.3
LSM11P83369 H2AFY-210ENST00000506671 1905 ntTSL 516.8■□□□□ 0.282e-6■■■■□ 21.3
LSM11P83369 H2AFY-202ENST00000312469 1859 ntTSL 5 BASIC14.64□□□□□ -0.072e-6■■■■□ 21.3
LSM11P83369 H2AFY-213ENST00000508785 966 ntTSL 214.11□□□□□ -0.152e-6■■■■□ 21.3
LSM11P83369 H2AFY-203ENST00000360597 1772 ntTSL 512.76□□□□□ -0.372e-6■■■■□ 21.3
LSM11P83369 H2AFY-209ENST00000506532 677 ntTSL 212.06□□□□□ -0.482e-6■■■■□ 21.3
LSM11P83369 H2AFY-219ENST00000513210 775 ntTSL 210.99□□□□□ -0.652e-6■■■■□ 21.3
LSM11P83369 H2AFY-201ENST00000304332 1881 ntAPPRIS ALT1 TSL 1 (best) BASIC10.68□□□□□ -0.72e-6■■■■□ 21.3
LSM11P83369 H2AFY-215ENST00000510038 1314 ntAPPRIS P4 TSL 1 (best) BASIC8.81□□□□□ -12e-6■■■■□ 21.3
LSM11P83369 GSE1-202ENST00000393243 7140 ntAPPRIS ALT2 TSL 1 (best) BASIC11.98□□□□□ -0.497e-7■■■■□ 21.2
LSM11P83369 GSE1-201ENST00000253458 7495 ntAPPRIS P3 TSL 5 BASIC11.5□□□□□ -0.577e-7■■■■□ 21.2
LSM11P83369 ABCA7-208ENST00000525939 374 ntTSL 319.41■□□□□ 0.71e-6■■■■□ 21.2
LSM11P83369 DNAJC11-204ENST00000451196 1357 ntTSL 1 (best)17.94■□□□□ 0.461e-6■■■■□ 21.2
LSM11P83369 DNAJC11-201ENST00000294401 2210 ntTSL 1 (best) BASIC17.79■□□□□ 0.441e-6■■■■□ 21.2
LSM11P83369 TMEM222-201ENST00000374076 1599 ntAPPRIS P2 TSL 1 (best) BASIC16.04■□□□□ 0.161e-6■■■■□ 21.2
LSM11P83369 TMEM222-202ENST00000464720 1665 ntTSL 1 (best)15.73■□□□□ 0.111e-6■■■■□ 21.2
LSM11P83369 TMEM222-210ENST00000608611 1511 ntAPPRIS ALT1 TSL 1 (best) BASIC14.78□□□□□ -0.041e-6■■■■□ 21.2
LSM11P83369 TMEM222-211ENST00000611517 1613 ntAPPRIS P2 TSL 1 (best) BASIC14.26□□□□□ -0.131e-6■■■■□ 21.2
LSM11P83369 DNAJC11-206ENST00000465508 3014 ntTSL 213.3□□□□□ -0.281e-6■■■■□ 21.2
LSM11P83369 TMEM222-205ENST00000470223 2841 ntTSL 213.28□□□□□ -0.281e-6■■■■□ 21.2
LSM11P83369 TMEM222-206ENST00000471456 2861 ntTSL 212.79□□□□□ -0.361e-6■■■■□ 21.2
LSM11P83369 GGA3-220ENST00000613421 5156 ntTSL 212.38□□□□□ -0.431e-6■■■■□ 21.2
LSM11P83369 DNAJC11-202ENST00000377577 3311 ntAPPRIS P1 TSL 1 (best) BASIC12.19□□□□□ -0.461e-6■■■■□ 21.2
LSM11P83369 ELMO2-201ENST00000290246 3669 ntAPPRIS P2 TSL 1 (best) BASIC11.74□□□□□ -0.531e-6■■■■□ 21.2
LSM11P83369 ELMO2-204ENST00000396391 3574 ntAPPRIS P2 TSL 1 (best) BASIC11.07□□□□□ -0.641e-6■■■■□ 21.2
LSM11P83369 ELMO2-207ENST00000452857 2158 ntTSL 59.81□□□□□ -0.841e-6■■■■□ 21.2
LSM11P83369 ITGA2-203ENST00000509814 3487 ntTSL 1 (best)9.43□□□□□ -0.91e-6■■■■□ 21.2
LSM11P83369 AC078846.1-201ENST00000608694 7083 ntBASIC9.32□□□□□ -0.921e-6■■■■□ 21.2
LSM11P83369 GGA3-221ENST00000614198 3438 ntTSL 29.17□□□□□ -0.941e-6■■■■□ 21.2
LSM11P83369 ITGA2-206ENST00000513685 3501 ntTSL 1 (best)9.1□□□□□ -0.951e-6■■■■□ 21.2
LSM11P83369 GGA3-201ENST00000537686 4069 ntAPPRIS P1 TSL 1 (best) BASIC9.03□□□□□ -0.961e-6■■■■□ 21.2
LSM11P83369 ITGA2-204ENST00000509960 3674 ntTSL 1 (best)8.9□□□□□ -0.981e-6■■■■□ 21.2
LSM11P83369 ITGA2-205ENST00000510722 3530 ntTSL 1 (best)8.79□□□□□ -11e-6■■■■□ 21.2
LSM11P83369 GGA3-222ENST00000621217 4181 ntTSL 28.48□□□□□ -1.051e-6■■■■□ 21.2
LSM11P83369 GGA3-223ENST00000621870 4034 ntTSL 1 (best)8.24□□□□□ -1.091e-6■■■■□ 21.2
LSM11P83369 ITGA2-202ENST00000503810 3782 ntTSL 58.22□□□□□ -1.091e-6■■■■□ 21.2
LSM11P83369 ELMO2-212ENST00000467800 4121 ntTSL 1 (best)7.96□□□□□ -1.131e-6■■■■□ 21.2
LSM11P83369 GGA3-202ENST00000538886 3766 ntTSL 1 (best) BASIC7.87□□□□□ -1.151e-6■■■■□ 21.2
LSM11P83369 SMG1-202ENST00000446231 16115 ntAPPRIS P1 TSL 1 (best) BASIC7.09□□□□□ -1.271e-6■■■■□ 21.2
LSM11P83369 ITGA2-201ENST00000296585 7869 ntAPPRIS P1 TSL 1 (best) BASIC6.3□□□□□ -1.41e-6■■■■□ 21.2
LSM11P83369 ELMO2-203ENST00000372176 3678 ntTSL 5 BASIC6.3□□□□□ -1.41e-6■■■■□ 21.2
LSM11P83369 MYSM1-203ENST00000472487 7785 ntAPPRIS P1 TSL 1 (best) BASIC3.77□□□□□ -1.811e-6■■■■□ 21.2
LSM11P83369 MYSM1-208ENST00000622766 6020 ntTSL 1 (best) BASIC2.36□□□□□ -2.031e-6■■■■□ 21.2
LSM11P83369 MYSM1-207ENST00000493821 7793 ntTSL 1 (best)2.12□□□□□ -2.071e-6■■■■□ 21.2
LSM11P83369 RAB12-201ENST00000329286 2137 ntAPPRIS P1 TSL 1 (best) BASIC29.28■■■□□ 2.281e-16■■■■□ 21.2
LSM11P83369 ABCD4-202ENST00000460308 1003 ntTSL 1 (best)18.8■□□□□ 0.67e-9■■■■□ 21.2
LSM11P83369 ABCD4-208ENST00000475240 546 ntTSL 516.65■□□□□ 0.267e-9■■■■□ 21.2
LSM11P83369 ABCD4-228ENST00000557588 763 ntTSL 3 BASIC16.18■□□□□ 0.187e-9■■■■□ 21.2
LSM11P83369 ABCD4-209ENST00000477803 594 ntTSL 216.18■□□□□ 0.187e-9■■■■□ 21.2
LSM11P83369 ELP4-226ENST00000640790 1249 ntTSL 514.8□□□□□ -0.049e-13■■■■□ 21.2
LSM11P83369 ELP4-206ENST00000638317 450 ntTSL 314.3□□□□□ -0.129e-13■■■■□ 21.2
LSM11P83369 ABCD4-218ENST00000553486 1842 ntTSL 1 (best)14.2□□□□□ -0.147e-9■■■■□ 21.2
LSM11P83369 ELP4-201ENST00000350638 1907 ntAPPRIS ALT1 TSL 5 BASIC13.46□□□□□ -0.259e-13■■■■□ 21.2
LSM11P83369 ELP4-205ENST00000638184 1330 ntTSL 512.94□□□□□ -0.349e-13■■■■□ 21.2
LSM11P83369 ABCD4-219ENST00000553745 1770 ntTSL 212.92□□□□□ -0.347e-9■■■■□ 21.2
Retrieved 100 of 11,495 protein–RNA pairs in 69.3 ms