Protein–RNA interactions for Protein: P22415

USF1, Upstream stimulatory factor 1, humanhuman

Predicted RBP Predictions only

Length 310 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USF1P22415 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC18.75■□□□□ 0.59
USF1P22415 NME4-211ENST00000620944 1193 ntTSL 2 BASIC18.75■□□□□ 0.59
USF1P22415 NTN1-201ENST00000173229 5954 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
USF1P22415 ARPP19-201ENST00000249822 5301 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
USF1P22415 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
USF1P22415 ESR2-202ENST00000341099 2060 ntAPPRIS P1 TSL 1 (best) BASIC18.75■□□□□ 0.59
USF1P22415 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC18.75■□□□□ 0.59
USF1P22415 BIN1-205ENST00000351659 2365 ntTSL 1 (best) BASIC18.75■□□□□ 0.59
USF1P22415 TSPY26P-201ENST00000476365 1326 ntBASIC18.74■□□□□ 0.59
USF1P22415 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
USF1P22415 SPG21-202ENST00000416889 1533 ntTSL 2 BASIC18.74■□□□□ 0.59
USF1P22415 BSPRY-201ENST00000374183 2339 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
USF1P22415 TXNRD2-201ENST00000334363 1893 ntTSL 1 (best) BASIC18.74■□□□□ 0.59
USF1P22415 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC18.74■□□□□ 0.59
USF1P22415 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC18.74■□□□□ 0.59
USF1P22415 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
USF1P22415 AC010203.1-202ENST00000550096 695 ntTSL 3 BASIC18.74■□□□□ 0.59
USF1P22415 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC18.73■□□□□ 0.59
USF1P22415 AL353743.1-201ENST00000637846 1769 ntTSL 5 BASIC18.73■□□□□ 0.59
USF1P22415 YBX1P1-201ENST00000445822 960 ntBASIC18.73■□□□□ 0.59
USF1P22415 LINC01942-201ENST00000521373 513 ntTSL 4 BASIC18.73■□□□□ 0.59
USF1P22415 AKT1-203ENST00000407796 2710 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
USF1P22415 CPLX1-201ENST00000304062 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
USF1P22415 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC18.73■□□□□ 0.59
USF1P22415 SLC4A3-203ENST00000358055 4454 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
USF1P22415 NR2F1-AS1-210ENST00000606739 1431 ntTSL 2 BASIC18.73■□□□□ 0.59
USF1P22415 CT47B1-201ENST00000371311 1328 ntAPPRIS P1 TSL 5 BASIC18.73■□□□□ 0.59
USF1P22415 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
USF1P22415 R3HDM4-201ENST00000361574 1815 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
USF1P22415 FAM47E-201ENST00000424749 1484 ntAPPRIS P3 TSL 5 BASIC18.72■□□□□ 0.59
USF1P22415 TMED2-201ENST00000262225 2560 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
USF1P22415 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
USF1P22415 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
USF1P22415 ASB1-202ENST00000409297 878 ntTSL 5 BASIC18.72■□□□□ 0.59
USF1P22415 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
USF1P22415 SLC47A1P1-202ENST00000449666 945 ntBASIC18.72■□□□□ 0.59
USF1P22415 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
USF1P22415 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
USF1P22415 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
USF1P22415 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC18.72■□□□□ 0.59
USF1P22415 HSPBP1-206ENST00000587922 1449 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
USF1P22415 TMEM202-AS1-202ENST00000565181 2325 ntBASIC18.72■□□□□ 0.59
USF1P22415 SYNGR3-202ENST00000562045 1743 ntTSL 2 BASIC18.71■□□□□ 0.59
USF1P22415 CDH23-206ENST00000398842 1759 ntTSL 5 BASIC18.71■□□□□ 0.59
USF1P22415 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
USF1P22415 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
USF1P22415 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC18.71■□□□□ 0.59
USF1P22415 GATA3-AS1-204ENST00000438755 675 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
USF1P22415 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC18.71■□□□□ 0.59
USF1P22415 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
USF1P22415 AP001107.5-202ENST00000533759 948 ntTSL 5 BASIC18.71■□□□□ 0.59
USF1P22415 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC18.71■□□□□ 0.59
USF1P22415 KCNMA1-224ENST00000618048 1269 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
USF1P22415 AL358852.1-201ENST00000623174 1268 ntBASIC18.71■□□□□ 0.59
USF1P22415 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
USF1P22415 RNF19B-203ENST00000373456 2560 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.59
USF1P22415 ZNHIT2-201ENST00000310597 1306 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
USF1P22415 IGDCC4-201ENST00000352385 6508 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
USF1P22415 EI24-204ENST00000527235 1625 ntTSL 5 BASIC18.71■□□□□ 0.58
USF1P22415 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC18.7■□□□□ 0.58
USF1P22415 LINC02043-201ENST00000419745 1832 ntTSL 2 BASIC18.7■□□□□ 0.58
USF1P22415 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC18.7■□□□□ 0.58
USF1P22415 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC18.7■□□□□ 0.58
USF1P22415 CAPN10-207ENST00000391984 2644 ntAPPRIS P2 TSL 1 (best) BASIC18.7■□□□□ 0.58
USF1P22415 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC18.7■□□□□ 0.58
USF1P22415 ZEB1-AS1-201ENST00000423714 456 ntTSL 3 BASIC18.7■□□□□ 0.58
USF1P22415 PTGDR-202ENST00000553372 1216 ntTSL 3 BASIC18.7■□□□□ 0.58
USF1P22415 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC18.7■□□□□ 0.58
USF1P22415 ARL6IP4-201ENST00000315580 1644 ntAPPRIS P3 TSL 1 (best) BASIC18.7■□□□□ 0.58
USF1P22415 RAP1B-207ENST00000450214 1466 ntTSL 2 BASIC18.7■□□□□ 0.58
USF1P22415 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC18.7■□□□□ 0.58
USF1P22415 TMEM256-PLSCR3-204ENST00000573331 2557 ntAPPRIS P5 TSL 2 BASIC18.7■□□□□ 0.58
USF1P22415 ST3GAL5-269ENST00000640992 2292 ntAPPRIS ALT2 TSL 5 BASIC18.7■□□□□ 0.58
USF1P22415 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC18.69■□□□□ 0.58
USF1P22415 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
USF1P22415 TMEM44-202ENST00000347147 2245 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
USF1P22415 ACSF2-203ENST00000502667 2098 ntTSL 2 BASIC18.69■□□□□ 0.58
USF1P22415 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
USF1P22415 AGTR1-203ENST00000404754 2252 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
USF1P22415 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
USF1P22415 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC18.69■□□□□ 0.58
USF1P22415 TMEM70-203ENST00000517439 617 ntTSL 2 BASIC18.69■□□□□ 0.58
USF1P22415 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC18.69■□□□□ 0.58
USF1P22415 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC18.69■□□□□ 0.58
USF1P22415 PARD3-202ENST00000346874 5894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
USF1P22415 PARD3-203ENST00000350537 5867 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
USF1P22415 GNPTG-201ENST00000204679 1983 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
USF1P22415 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
USF1P22415 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC18.69■□□□□ 0.58
USF1P22415 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC18.69■□□□□ 0.58
USF1P22415 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC18.68■□□□□ 0.58
USF1P22415 STX18-205ENST00000505286 1380 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
USF1P22415 LRRC24-201ENST00000529415 1758 ntAPPRIS P2 TSL 1 (best) BASIC18.68■□□□□ 0.58
USF1P22415 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC18.68■□□□□ 0.58
USF1P22415 SNCB-206ENST00000614675 1407 ntTSL 1 (best) BASIC18.68■□□□□ 0.58
USF1P22415 GRM6-201ENST00000231188 6143 ntAPPRIS P1 TSL 2 BASIC18.68■□□□□ 0.58
USF1P22415 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC18.68■□□□□ 0.58
USF1P22415 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC18.68■□□□□ 0.58
USF1P22415 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC18.68■□□□□ 0.58
USF1P22415 IGHV3-19-201ENST00000521488 291 ntBASIC18.68■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 30 ms