Protein–RNA interactions for Protein: P03956

MMP1, Interstitial collagenase, humanhuman

Predictions only

Length 469 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
MMP1P03956 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC25.63■■□□□ 1.69
MMP1P03956 RGS7-204ENST00000366565 2494 ntAPPRIS P3 TSL 1 (best) BASIC25.62■■□□□ 1.69
MMP1P03956 SPPL2B-211ENST00000614794 1559 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
MMP1P03956 ZNRF1-205ENST00000566250 1069 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
MMP1P03956 ZNRF1-206ENST00000567962 1234 ntAPPRIS P1 TSL 1 (best) BASIC25.62■■□□□ 1.69
MMP1P03956 EFCC1-201ENST00000436022 2691 ntAPPRIS P1 TSL 5 BASIC25.62■■□□□ 1.69
MMP1P03956 ALG1L9P-201ENST00000508969 2165 ntTSL 1 (best) BASIC25.62■■□□□ 1.69
MMP1P03956 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC25.61■■□□□ 1.69
MMP1P03956 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
MMP1P03956 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
MMP1P03956 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC25.61■■□□□ 1.69
MMP1P03956 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC25.61■■□□□ 1.69
MMP1P03956 DTNB-211ENST00000407661 2420 ntAPPRIS ALT1 TSL 1 (best) BASIC25.61■■□□□ 1.69
MMP1P03956 COMT-203ENST00000403184 2217 ntTSL 2 BASIC25.6■■□□□ 1.69
MMP1P03956 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC25.6■■□□□ 1.69
MMP1P03956 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC25.6■■□□□ 1.69
MMP1P03956 PCGF3-202ENST00000400151 1175 ntTSL 2 BASIC25.6■■□□□ 1.69
MMP1P03956 MIR17HG-201ENST00000400282 931 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
MMP1P03956 MAST4-205ENST00000406039 717 ntTSL 1 (best) BASIC25.6■■□□□ 1.69
MMP1P03956 TMEM80-207ENST00000608174 800 ntTSL 5 BASIC25.6■■□□□ 1.69
MMP1P03956 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC25.6■■□□□ 1.69
MMP1P03956 MAGED2-206ENST00000375068 2189 ntAPPRIS P2 TSL 1 (best) BASIC25.6■■□□□ 1.69
MMP1P03956 RYK-209ENST00000623711 2934 ntAPPRIS ALT2 TSL 1 (best) BASIC25.6■■□□□ 1.69
MMP1P03956 RALB-201ENST00000272519 2344 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
MMP1P03956 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC25.59■■□□□ 1.69
MMP1P03956 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC25.59■■□□□ 1.69
MMP1P03956 METTL21A-210ENST00000458426 1366 ntTSL 1 (best) BASIC25.59■■□□□ 1.69
MMP1P03956 LSR-204ENST00000361790 2210 ntAPPRIS P4 TSL 1 (best) BASIC25.59■■□□□ 1.69
MMP1P03956 AL136116.3-201ENST00000402907 1138 ntBASIC25.59■■□□□ 1.69
MMP1P03956 QDPR-206ENST00000508623 601 ntTSL 3 BASIC25.59■■□□□ 1.69
MMP1P03956 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC25.59■■□□□ 1.69
MMP1P03956 RUNX2-210ENST00000576263 2256 ntTSL 5 BASIC25.59■■□□□ 1.69
MMP1P03956 APBB3-204ENST00000358580 2020 ntTSL 5 BASIC25.59■■□□□ 1.69
MMP1P03956 TLX3-201ENST00000296921 1493 ntAPPRIS P1 TSL 1 (best) BASIC25.59■■□□□ 1.69
MMP1P03956 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC25.58■■□□□ 1.69
MMP1P03956 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC25.58■■□□□ 1.69
MMP1P03956 KRTAP5-1-201ENST00000382171 942 ntAPPRIS P1 BASIC25.58■■□□□ 1.69
MMP1P03956 HDHD5-203ENST00000399852 1118 ntTSL 3 BASIC25.58■■□□□ 1.69
MMP1P03956 CLPSL2-202ENST00000403376 405 ntAPPRIS P3 TSL 1 (best) BASIC25.58■■□□□ 1.69
MMP1P03956 AL512631.2-201ENST00000604634 923 ntBASIC25.58■■□□□ 1.69
MMP1P03956 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC25.58■■□□□ 1.69
MMP1P03956 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC25.58■■□□□ 1.69
MMP1P03956 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC25.58■■□□□ 1.68
MMP1P03956 NRXN1-205ENST00000401710 2873 ntTSL 5 BASIC25.58■■□□□ 1.68
MMP1P03956 RAX-201ENST00000256852 2935 ntTSL 1 (best) BASIC25.57■■□□□ 1.68
MMP1P03956 WT1-204ENST00000448076 2114 ntAPPRIS ALT2 TSL 2 BASIC25.57■■□□□ 1.68
MMP1P03956 AC019163.1-201ENST00000512634 610 ntTSL 2 BASIC25.57■■□□□ 1.68
MMP1P03956 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC25.56■■□□□ 1.68
MMP1P03956 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC25.56■■□□□ 1.68
MMP1P03956 SYT7-203ENST00000539008 2061 ntTSL 5 BASIC25.56■■□□□ 1.68
MMP1P03956 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC25.56■■□□□ 1.68
MMP1P03956 AC007326.4-201ENST00000638240 1669 ntAPPRIS P1 TSL 5 BASIC25.56■■□□□ 1.68
MMP1P03956 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC25.56■■□□□ 1.68
MMP1P03956 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC25.56■■□□□ 1.68
MMP1P03956 KRAS-204ENST00000557334 1052 ntTSL 5 BASIC25.56■■□□□ 1.68
MMP1P03956 AL445237.1-202ENST00000604581 425 ntTSL 5 BASIC25.56■■□□□ 1.68
MMP1P03956 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC25.56■■□□□ 1.68
MMP1P03956 UPF3A-201ENST00000351487 2235 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
MMP1P03956 ARHGEF9-204ENST00000374878 2217 ntTSL 1 (best) BASIC25.56■■□□□ 1.68
MMP1P03956 RCE1-202ENST00000524506 1379 ntTSL 5 BASIC25.56■■□□□ 1.68
MMP1P03956 HNRNPAB-201ENST00000355836 1602 ntAPPRIS ALT2 TSL 1 (best) BASIC25.55■■□□□ 1.68
MMP1P03956 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC25.55■■□□□ 1.68
MMP1P03956 ANXA8-204ENST00000583911 1874 ntTSL 2 BASIC25.55■■□□□ 1.68
MMP1P03956 PCP4L1-201ENST00000504449 1424 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
MMP1P03956 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
MMP1P03956 PICK1-202ENST00000404072 2164 ntAPPRIS P1 TSL 2 BASIC25.55■■□□□ 1.68
MMP1P03956 VSX1-205ENST00000429762 1977 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
MMP1P03956 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC25.55■■□□□ 1.68
MMP1P03956 MADCAM1-205ENST00000613880 1509 ntAPPRIS ALT2 TSL 5 BASIC25.55■■□□□ 1.68
MMP1P03956 TMEM218-209ENST00000529583 848 ntAPPRIS P1 TSL 3 BASIC25.55■■□□□ 1.68
MMP1P03956 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC25.55■■□□□ 1.68
MMP1P03956 FAM43A-201ENST00000329759 2494 ntAPPRIS P1 BASIC25.55■■□□□ 1.68
MMP1P03956 OAS3-205ENST00000548514 1392 ntTSL 2 BASIC25.55■■□□□ 1.68
MMP1P03956 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC25.55■■□□□ 1.68
MMP1P03956 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC25.54■■□□□ 1.68
MMP1P03956 C1QL3-201ENST00000298943 2493 ntAPPRIS P1 TSL 1 (best) BASIC25.54■■□□□ 1.68
MMP1P03956 TMEM80-201ENST00000397510 1094 ntAPPRIS P2 TSL 5 BASIC25.54■■□□□ 1.68
MMP1P03956 PPP1R14A-205ENST00000591585 949 ntTSL 2 BASIC25.54■■□□□ 1.68
MMP1P03956 WDR86-208ENST00000628331 1905 ntTSL 5 BASIC25.54■■□□□ 1.68
MMP1P03956 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC25.54■■□□□ 1.68
MMP1P03956 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC25.54■■□□□ 1.68
MMP1P03956 CACNB1-203ENST00000394310 1753 ntAPPRIS ALT1 TSL 1 (best) BASIC25.54■■□□□ 1.68
MMP1P03956 IDH2-202ENST00000540499 1453 ntTSL 2 BASIC25.53■■□□□ 1.68
MMP1P03956 LACTBL1-201ENST00000426928 1641 ntAPPRIS P5 TSL 5 BASIC25.53■■□□□ 1.68
MMP1P03956 TNFRSF25-201ENST00000348333 1119 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
MMP1P03956 PYCARD-202ENST00000350605 696 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
MMP1P03956 TNFRSF25-202ENST00000351748 705 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
MMP1P03956 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC25.53■■□□□ 1.68
MMP1P03956 OIP5-AS1-208ENST00000560706 473 ntTSL 5 BASIC25.53■■□□□ 1.68
MMP1P03956 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC25.53■■□□□ 1.68
MMP1P03956 AC009086.3-201ENST00000623486 1008 ntBASIC25.53■■□□□ 1.68
MMP1P03956 Z98883.1-202ENST00000635107 1289 ntTSL 5 BASIC25.53■■□□□ 1.68
MMP1P03956 HOXD4-201ENST00000306324 1464 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
MMP1P03956 KCNK13-201ENST00000282146 2522 ntAPPRIS P1 TSL 1 (best) BASIC25.53■■□□□ 1.68
MMP1P03956 GATM-206ENST00000558336 1522 ntTSL 2 BASIC25.53■■□□□ 1.68
MMP1P03956 CCDC9-201ENST00000221922 2093 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
MMP1P03956 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC25.52■■□□□ 1.68
MMP1P03956 PRODH-203ENST00000357068 2462 ntAPPRIS P3 TSL 1 (best) BASIC25.52■■□□□ 1.68
MMP1P03956 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC25.52■■□□□ 1.68
MMP1P03956 SURF2-201ENST00000371964 842 ntAPPRIS P1 TSL 1 (best) BASIC25.52■■□□□ 1.68
Retrieved 100 of 98,524 protein–RNA pairs in 22.8 ms