Protein–RNA interactions for Protein: P01375

TNF, Tumor necrosis factor, humanhuman

Predictions only

Length 233 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TNFP01375 AK1-201ENST00000223836 736 ntTSL 3 BASIC21.8■■□□□ 1.08
TNFP01375 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC21.8■■□□□ 1.08
TNFP01375 HERC2P4-206ENST00000568097 1062 ntTSL 5 BASIC21.8■■□□□ 1.08
TNFP01375 AES-207ENST00000586839 942 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
TNFP01375 NPAS1-208ENST00000602212 2117 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
TNFP01375 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC21.8■■□□□ 1.08
TNFP01375 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC21.8■■□□□ 1.08
TNFP01375 BCL2L12-212ENST00000616144 1854 ntAPPRIS P3 TSL 1 (best) BASIC21.79■■□□□ 1.08
TNFP01375 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
TNFP01375 HSD11B2-201ENST00000326152 1900 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
TNFP01375 MMP21-201ENST00000368808 1919 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
TNFP01375 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
TNFP01375 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC21.79■■□□□ 1.08
TNFP01375 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC21.79■■□□□ 1.08
TNFP01375 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC21.79■■□□□ 1.08
TNFP01375 SCAND1-202ENST00000373991 1727 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
TNFP01375 TMEM266-201ENST00000388942 2520 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
TNFP01375 C7orf26-202ENST00000359073 1762 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
TNFP01375 R3HDM4-203ENST00000587975 1765 ntTSL 3 BASIC21.79■■□□□ 1.08
TNFP01375 AFDN-201ENST00000344191 5249 ntTSL 5 BASIC21.79■■□□□ 1.08
TNFP01375 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
TNFP01375 PHF10-202ENST00000366780 1589 ntAPPRIS ALT2 TSL 5 BASIC21.78■■□□□ 1.08
TNFP01375 ALKAL2-204ENST00000403610 1389 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
TNFP01375 CEP104-201ENST00000378223 1121 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
TNFP01375 PLD4-205ENST00000553861 667 ntTSL 2 BASIC21.78■■□□□ 1.08
TNFP01375 CDX1-201ENST00000231656 1758 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
TNFP01375 DHH-201ENST00000266991 1936 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
TNFP01375 PACRGL-201ENST00000295290 1937 ntTSL 5 BASIC21.78■■□□□ 1.08
TNFP01375 OTUD5-203ENST00000396743 2682 ntAPPRIS ALT1 TSL 1 (best) BASIC21.77■■□□□ 1.08
TNFP01375 AC099805.1-201ENST00000523987 1797 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
TNFP01375 PREB-202ENST00000406567 1910 ntTSL 5 BASIC21.77■■□□□ 1.08
TNFP01375 ZNRF1-201ENST00000320619 2479 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
TNFP01375 NME4-201ENST00000219479 995 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
TNFP01375 NME4-202ENST00000382940 766 ntTSL 3 BASIC21.77■■□□□ 1.08
TNFP01375 MED14OS-201ENST00000456333 900 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
TNFP01375 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC21.77■■□□□ 1.08
TNFP01375 AP005435.1-201ENST00000529293 1178 ntBASIC21.77■■□□□ 1.08
TNFP01375 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC21.77■■□□□ 1.08
TNFP01375 AC087623.3-201ENST00000607047 1098 ntBASIC21.77■■□□□ 1.08
TNFP01375 NME4-211ENST00000620944 1193 ntTSL 2 BASIC21.77■■□□□ 1.08
TNFP01375 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC21.77■■□□□ 1.08
TNFP01375 CEBPB-201ENST00000303004 1956 ntAPPRIS P1 BASIC21.77■■□□□ 1.08
TNFP01375 POU2F3-206ENST00000543440 1953 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
TNFP01375 EHBP1L1-201ENST00000309295 5185 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
TNFP01375 LGALS9B-202ENST00000423676 1713 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.08
TNFP01375 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC21.77■■□□□ 1.07
TNFP01375 AP002761.3-201ENST00000546324 1695 ntTSL 2 BASIC21.76■■□□□ 1.07
TNFP01375 GFRA3-202ENST00000378362 1837 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
TNFP01375 PLEKHB1-201ENST00000227214 2016 ntAPPRIS ALT1 TSL 1 (best) BASIC21.76■■□□□ 1.07
TNFP01375 MIR572-201ENST00000384983 95 ntBASIC21.76■■□□□ 1.07
TNFP01375 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC21.76■■□□□ 1.07
TNFP01375 KLRG2-202ENST00000393039 1148 ntTSL 5 BASIC21.76■■□□□ 1.07
TNFP01375 AC116614.1-201ENST00000456949 539 ntTSL 2 BASIC21.76■■□□□ 1.07
TNFP01375 AC005775.1-201ENST00000592413 850 ntTSL 5 BASIC21.76■■□□□ 1.07
TNFP01375 SP2-202ENST00000613139 908 ntTSL 5 BASIC21.76■■□□□ 1.07
TNFP01375 SLC25A29-201ENST00000359232 2385 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
TNFP01375 ZC3H14-219ENST00000556945 2075 ntTSL 5 BASIC21.76■■□□□ 1.07
TNFP01375 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
TNFP01375 STX4-202ENST00000394998 1498 ntTSL 2 BASIC21.76■■□□□ 1.07
TNFP01375 TTC39A-203ENST00000371747 1876 ntTSL 2 BASIC21.75■■□□□ 1.07
TNFP01375 STK19-202ENST00000375333 1557 ntAPPRIS P3 TSL 1 (best) BASIC21.75■■□□□ 1.07
TNFP01375 RNF223-201ENST00000453464 1902 ntAPPRIS P1 TSL 2 BASIC21.75■■□□□ 1.07
TNFP01375 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC21.75■■□□□ 1.07
TNFP01375 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
TNFP01375 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC21.75■■□□□ 1.07
TNFP01375 LINC01167-201ENST00000423232 604 ntTSL 3 BASIC21.75■■□□□ 1.07
TNFP01375 C1QTNF5-203ENST00000530681 1046 ntAPPRIS P1 TSL 1 (best) BASIC21.75■■□□□ 1.07
TNFP01375 AL358852.1-201ENST00000623174 1268 ntBASIC21.75■■□□□ 1.07
TNFP01375 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC21.75■■□□□ 1.07
TNFP01375 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC21.75■■□□□ 1.07
TNFP01375 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
TNFP01375 MBOAT7-201ENST00000245615 2529 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
TNFP01375 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC21.74■■□□□ 1.07
TNFP01375 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
TNFP01375 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
TNFP01375 TMEM64-203ENST00000458549 4997 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
TNFP01375 NDUFB2-201ENST00000247866 504 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
TNFP01375 CCDC28B-201ENST00000373602 1089 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
TNFP01375 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC21.74■■□□□ 1.07
TNFP01375 ANKRD20A6P-201ENST00000618763 204 ntBASIC21.74■■□□□ 1.07
TNFP01375 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC21.74■■□□□ 1.07
TNFP01375 AL353803.4-201ENST00000565882 1934 ntBASIC21.74■■□□□ 1.07
TNFP01375 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC21.74■■□□□ 1.07
TNFP01375 ID2-201ENST00000234091 2041 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
TNFP01375 LYRM1-201ENST00000219168 1626 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
TNFP01375 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
TNFP01375 ERI3-201ENST00000372257 1684 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
TNFP01375 C11orf95-202ENST00000433688 5716 ntAPPRIS P1 TSL 5 BASIC21.73■■□□□ 1.07
TNFP01375 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
TNFP01375 BCAP29-209ENST00000465919 942 ntTSL 2 BASIC21.73■■□□□ 1.07
TNFP01375 GALNS-211ENST00000568311 703 ntTSL 1 (best) BASIC21.73■■□□□ 1.07
TNFP01375 AL138963.3-201ENST00000610057 588 ntTSL 4 BASIC21.73■■□□□ 1.07
TNFP01375 AC092666.2-201ENST00000613287 246 ntBASIC21.73■■□□□ 1.07
TNFP01375 BTBD17-201ENST00000375366 1805 ntAPPRIS P1 TSL 1 (best) BASIC21.73■■□□□ 1.07
TNFP01375 KCTD15-207ENST00000589786 1625 ntAPPRIS P1 TSL 2 BASIC21.73■■□□□ 1.07
TNFP01375 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC21.72■■□□□ 1.07
TNFP01375 SH2D3A-202ENST00000437152 2013 ntTSL 2 BASIC21.72■■□□□ 1.07
TNFP01375 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC21.72■■□□□ 1.07
TNFP01375 EGR4-201ENST00000436467 2377 ntAPPRIS ALT2 TSL 1 (best) BASIC21.72■■□□□ 1.07
TNFP01375 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC21.72■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 26.3 ms