Protein–RNA interactions for Protein: O75351

VPS4B, Vacuolar protein sorting-associated protein 4B, humanhuman

Predictions only

Length 444 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4BO75351 ZKSCAN7-206ENST00000431636 1692 ntTSL 1 (best) BASIC21.72■■□□□ 1.07
VPS4BO75351 ZNF444-201ENST00000337080 2042 ntAPPRIS P3 TSL 1 (best) BASIC21.72■■□□□ 1.07
VPS4BO75351 AC096631.2-201ENST00000436136 790 ntBASIC21.72■■□□□ 1.07
VPS4BO75351 AL136090.1-201ENST00000446849 366 ntTSL 3 BASIC21.72■■□□□ 1.07
VPS4BO75351 AC092807.3-205ENST00000467666 531 ntTSL 3 BASIC21.72■■□□□ 1.07
VPS4BO75351 TOLLIP-208ENST00000527938 549 ntTSL 4 BASIC21.72■■□□□ 1.07
VPS4BO75351 AC120024.1-201ENST00000562672 995 ntBASIC21.72■■□□□ 1.07
VPS4BO75351 RNF39-201ENST00000244360 2206 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
VPS4BO75351 NRSN1-204ENST00000378491 2354 ntAPPRIS P1 TSL 1 (best) BASIC21.72■■□□□ 1.07
VPS4BO75351 HOMER3-203ENST00000433218 1418 ntAPPRIS ALT1 TSL 5 BASIC21.72■■□□□ 1.07
VPS4BO75351 NEURL4-202ENST00000399464 5200 ntAPPRIS P4 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS4BO75351 GNB2-201ENST00000303210 1878 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS4BO75351 ZGPAT-201ENST00000328969 1945 ntTSL 2 BASIC21.71■■□□□ 1.07
VPS4BO75351 SKIDA1-201ENST00000444772 2667 ntAPPRIS ALT2 TSL 5 BASIC21.71■■□□□ 1.07
VPS4BO75351 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS4BO75351 C6orf136-201ENST00000293604 1978 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
VPS4BO75351 CREG1-201ENST00000370509 1974 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS4BO75351 SENCR-201ENST00000526269 1298 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
VPS4BO75351 AC092666.2-201ENST00000613287 246 ntBASIC21.71■■□□□ 1.07
VPS4BO75351 FAM228B-208ENST00000613899 1238 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS4BO75351 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS4BO75351 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS4BO75351 EYA2-203ENST00000357410 2465 ntTSL 1 (best) BASIC21.71■■□□□ 1.07
VPS4BO75351 CCDC157-202ENST00000399824 1759 ntAPPRIS ALT2 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS4BO75351 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC21.71■■□□□ 1.07
VPS4BO75351 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC21.71■■□□□ 1.07
VPS4BO75351 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC21.7■■□□□ 1.06
VPS4BO75351 SH3D19-211ENST00000604030 5228 ntTSL 5 BASIC21.7■■□□□ 1.06
VPS4BO75351 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC21.7■■□□□ 1.06
VPS4BO75351 LIN7B-202ENST00000391864 582 ntTSL 3 BASIC21.7■■□□□ 1.06
VPS4BO75351 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC21.7■■□□□ 1.06
VPS4BO75351 TMC6-218ENST00000591436 1155 ntTSL 1 (best) BASIC21.7■■□□□ 1.06
VPS4BO75351 AL117332.1-201ENST00000622628 974 ntBASIC21.7■■□□□ 1.06
VPS4BO75351 DPEP2-204ENST00000572888 2112 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
VPS4BO75351 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC21.7■■□□□ 1.06
VPS4BO75351 TDRKH-206ENST00000440583 2296 ntTSL 5 BASIC21.69■■□□□ 1.06
VPS4BO75351 CLDN5-201ENST00000403084 2357 ntBASIC21.69■■□□□ 1.06
VPS4BO75351 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC21.69■■□□□ 1.06
VPS4BO75351 AC079630.1-202ENST00000618127 1840 ntBASIC21.69■■□□□ 1.06
VPS4BO75351 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
VPS4BO75351 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
VPS4BO75351 H2AFY2-201ENST00000373255 1980 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
VPS4BO75351 GAS1-201ENST00000298743 2827 ntAPPRIS P1 BASIC21.69■■□□□ 1.06
VPS4BO75351 SERTAD4-AS1-202ENST00000475406 591 ntTSL 2 BASIC21.69■■□□□ 1.06
VPS4BO75351 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC21.69■■□□□ 1.06
VPS4BO75351 CTDSP2-203ENST00000547701 988 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
VPS4BO75351 AL356740.2-201ENST00000601559 647 ntBASIC21.69■■□□□ 1.06
VPS4BO75351 AC010997.5-201ENST00000609182 354 ntBASIC21.69■■□□□ 1.06
VPS4BO75351 CLDN15-201ENST00000308344 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.69■■□□□ 1.06
VPS4BO75351 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
VPS4BO75351 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC21.69■■□□□ 1.06
VPS4BO75351 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC21.69■■□□□ 1.06
VPS4BO75351 STK25-234ENST00000535007 2459 ntTSL 2 BASIC21.69■■□□□ 1.06
VPS4BO75351 NIPA2-202ENST00000359727 1531 ntTSL 1 (best) BASIC21.69■■□□□ 1.06
VPS4BO75351 PDIA2-201ENST00000219406 1698 ntAPPRIS P2 TSL 1 (best) BASIC21.69■■□□□ 1.06
VPS4BO75351 LIMS2-202ENST00000355119 2045 ntAPPRIS ALT1 TSL 1 (best) BASIC21.68■■□□□ 1.06
VPS4BO75351 WHAMM-201ENST00000286760 5101 ntAPPRIS P1 TSL 1 (best) BASIC21.68■■□□□ 1.06
VPS4BO75351 AC093323.1-201ENST00000307533 2311 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
VPS4BO75351 ONECUT3-201ENST00000382349 8318 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
VPS4BO75351 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC21.68■■□□□ 1.06
VPS4BO75351 KLHL26-202ENST00000595182 522 ntTSL 4 BASIC21.68■■□□□ 1.06
VPS4BO75351 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
VPS4BO75351 SPOCK3-222ENST00000512681 1457 ntTSL 2 BASIC21.68■■□□□ 1.06
VPS4BO75351 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC21.68■■□□□ 1.06
VPS4BO75351 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC21.68■■□□□ 1.06
VPS4BO75351 EPS8L1-202ENST00000245618 2198 ntTSL 1 (best) BASIC21.68■■□□□ 1.06
VPS4BO75351 SNHG7-201ENST00000414282 2357 ntTSL 2 BASIC21.68■■□□□ 1.06
VPS4BO75351 REXO1-201ENST00000170168 4591 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
VPS4BO75351 MCMBP-202ENST00000369077 2465 ntAPPRIS ALT1 TSL 1 (best) BASIC21.67■■□□□ 1.06
VPS4BO75351 ASB6-201ENST00000277458 2330 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
VPS4BO75351 LSR-203ENST00000360798 1963 ntTSL 2 BASIC21.67■■□□□ 1.06
VPS4BO75351 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
VPS4BO75351 AC242852.2-201ENST00000615738 1807 ntBASIC21.67■■□□□ 1.06
VPS4BO75351 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
VPS4BO75351 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
VPS4BO75351 PFKP-201ENST00000381072 1698 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
VPS4BO75351 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC21.67■■□□□ 1.06
VPS4BO75351 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC21.67■■□□□ 1.06
VPS4BO75351 AC090587.2-201ENST00000430222 527 ntTSL 2 BASIC21.67■■□□□ 1.06
VPS4BO75351 MTDHP2-201ENST00000601468 714 ntBASIC21.67■■□□□ 1.06
VPS4BO75351 KIF2A-202ENST00000401507 2539 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
VPS4BO75351 LINC00565-201ENST00000562710 2331 ntBASIC21.67■■□□□ 1.06
VPS4BO75351 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.06
VPS4BO75351 DLL3-202ENST00000356433 2055 ntAPPRIS P1 TSL 2 BASIC21.67■■□□□ 1.06
VPS4BO75351 PLK5-202ENST00000454744 1930 ntAPPRIS P2 TSL 2 BASIC21.67■■□□□ 1.06
VPS4BO75351 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
VPS4BO75351 BARHL1-201ENST00000263610 2341 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
VPS4BO75351 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
VPS4BO75351 FAM173A-201ENST00000219535 806 ntAPPRIS ALT2 TSL 2 BASIC21.66■■□□□ 1.06
VPS4BO75351 AC004448.1-201ENST00000458332 883 ntBASIC21.66■■□□□ 1.06
VPS4BO75351 CDKN2A-208ENST00000498124 880 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
VPS4BO75351 CHTF8-208ENST00000522091 863 ntTSL 2 BASIC21.66■■□□□ 1.06
VPS4BO75351 AC133561.4-201ENST00000566112 224 ntBASIC21.66■■□□□ 1.06
VPS4BO75351 MIR3621-201ENST00000580529 85 ntBASIC21.66■■□□□ 1.06
VPS4BO75351 PRSS21-201ENST00000005995 1101 ntAPPRIS P1 TSL 1 (best) BASIC21.66■■□□□ 1.06
VPS4BO75351 LY6H-205ENST00000615409 980 ntAPPRIS P3 TSL 1 (best) BASIC21.66■■□□□ 1.06
VPS4BO75351 MIR6724-1-201ENST00000616420 92 ntBASIC21.66■■□□□ 1.06
VPS4BO75351 MIR6724-2-201ENST00000616483 92 ntBASIC21.66■■□□□ 1.06
VPS4BO75351 MIR6724-4-201ENST00000617390 92 ntBASIC21.66■■□□□ 1.06
VPS4BO75351 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC21.66■■□□□ 1.06
Retrieved 100 of 98,524 protein–RNA pairs in 59 ms