Protein–RNA interactions for Protein: O00257

CBX4, E3 SUMO-protein ligase CBX4, humanhuman

Predictions only

Length 560 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CBX4O00257 EDA-201ENST00000338901 1233 ntBASIC22.72■■□□□ 1.23
CBX4O00257 CLYBL-202ENST00000376354 1127 ntTSL 5 BASIC22.72■■□□□ 1.23
CBX4O00257 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
CBX4O00257 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
CBX4O00257 AL499627.2-201ENST00000606283 725 ntBASIC22.72■■□□□ 1.23
CBX4O00257 AL031432.3-201ENST00000607698 485 ntBASIC22.72■■□□□ 1.23
CBX4O00257 HOMER3-204ENST00000539827 1979 ntAPPRIS P3 TSL 1 (best) BASIC22.72■■□□□ 1.23
CBX4O00257 MFSD7-201ENST00000322224 2123 ntAPPRIS P3 TSL 1 (best) BASIC22.72■■□□□ 1.23
CBX4O00257 AC133637.1-201ENST00000624115 1537 ntBASIC22.72■■□□□ 1.23
CBX4O00257 PDLIM2-202ENST00000308354 2236 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
CBX4O00257 PDLIM2-203ENST00000339162 2226 ntTSL 1 (best) BASIC22.72■■□□□ 1.23
CBX4O00257 CADPS-203ENST00000383710 5471 ntAPPRIS ALT2 TSL 1 (best) BASIC22.71■■□□□ 1.23
CBX4O00257 TNFRSF10B-202ENST00000347739 1723 ntAPPRIS ALT2 TSL 1 (best) BASIC22.71■■□□□ 1.23
CBX4O00257 AC092068.2-201ENST00000590491 1708 ntBASIC22.71■■□□□ 1.23
CBX4O00257 BTBD2-201ENST00000255608 2649 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
CBX4O00257 DIXDC1-205ENST00000529225 1945 ntTSL 5 BASIC22.71■■□□□ 1.23
CBX4O00257 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
CBX4O00257 RAD9A-201ENST00000307980 2119 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
CBX4O00257 NDUFV2-201ENST00000318388 930 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
CBX4O00257 P2RX2-202ENST00000348800 1222 ntAPPRIS ALT2 TSL 1 (best) BASIC22.71■■□□□ 1.23
CBX4O00257 P2RX2-204ENST00000351222 1140 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
CBX4O00257 HYI-204ENST00000372432 1066 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
CBX4O00257 P2RX2-207ENST00000449132 1113 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
CBX4O00257 FAM174B-207ENST00000555748 866 ntAPPRIS ALT2 TSL 3 BASIC22.71■■□□□ 1.23
CBX4O00257 GRAMD4P4-201ENST00000613563 1115 ntBASIC22.71■■□□□ 1.23
CBX4O00257 SAP25-203ENST00000614631 987 ntAPPRIS P2 TSL 2 BASIC22.71■■□□□ 1.23
CBX4O00257 NEDD4L-237ENST00000617539 728 ntTSL 2 BASIC22.71■■□□□ 1.23
CBX4O00257 CDYL-203ENST00000397588 2184 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
CBX4O00257 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
CBX4O00257 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC22.71■■□□□ 1.23
CBX4O00257 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC22.71■■□□□ 1.23
CBX4O00257 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC22.71■■□□□ 1.23
CBX4O00257 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC22.71■■□□□ 1.23
CBX4O00257 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
CBX4O00257 CLPSL2-201ENST00000360454 488 ntAPPRIS ALT2 TSL 1 (best) BASIC22.7■■□□□ 1.22
CBX4O00257 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC22.7■■□□□ 1.22
CBX4O00257 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
CBX4O00257 AC007448.3-201ENST00000585193 689 ntTSL 2 BASIC22.7■■□□□ 1.22
CBX4O00257 CBWD3-212ENST00000616550 721 ntTSL 2 BASIC22.7■■□□□ 1.22
CBX4O00257 CBWD6-216ENST00000617933 721 ntTSL 3 BASIC22.7■■□□□ 1.22
CBX4O00257 AL355001.2-201ENST00000620617 1191 ntBASIC22.7■■□□□ 1.22
CBX4O00257 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC22.7■■□□□ 1.22
CBX4O00257 ROGDI-201ENST00000322048 1735 ntAPPRIS P1 TSL 1 (best) BASIC22.7■■□□□ 1.22
CBX4O00257 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC22.7■■□□□ 1.22
CBX4O00257 NKX2-3-201ENST00000344586 2097 ntAPPRIS P1 TSL 2 BASIC22.7■■□□□ 1.22
CBX4O00257 DNAAF3-203ENST00000524407 2059 ntAPPRIS ALT2 TSL 1 (best) BASIC22.7■■□□□ 1.22
CBX4O00257 ROR1-202ENST00000371080 2305 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
CBX4O00257 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC22.69■■□□□ 1.22
CBX4O00257 PREB-201ENST00000260643 2166 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
CBX4O00257 TSEN15-201ENST00000361641 1960 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
CBX4O00257 TOP2B-204ENST00000435706 5389 ntAPPRIS P3 TSL 1 (best) BASIC22.69■■□□□ 1.22
CBX4O00257 MEIOB-202ENST00000397344 1792 ntTSL 5 BASIC22.69■■□□□ 1.22
CBX4O00257 PLPP1-201ENST00000264775 1550 ntAPPRIS P4 TSL 1 (best) BASIC22.69■■□□□ 1.22
CBX4O00257 ABHD16B-201ENST00000369916 1491 ntAPPRIS P1 BASIC22.69■■□□□ 1.22
CBX4O00257 AP2S1-201ENST00000263270 935 ntAPPRIS P3 TSL 1 (best) BASIC22.69■■□□□ 1.22
CBX4O00257 AC105935.1-201ENST00000424174 422 ntTSL 3 BASIC22.69■■□□□ 1.22
CBX4O00257 SERGEF-219ENST00000532265 1124 ntTSL 2 BASIC22.69■■□□□ 1.22
CBX4O00257 SNAI3-AS1-201ENST00000563261 998 ntTSL 1 (best) BASIC22.69■■□□□ 1.22
CBX4O00257 AC092666.2-201ENST00000613287 246 ntBASIC22.69■■□□□ 1.22
CBX4O00257 MTMR14-202ENST00000351233 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC22.69■■□□□ 1.22
CBX4O00257 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC22.69■■□□□ 1.22
CBX4O00257 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
CBX4O00257 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
CBX4O00257 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
CBX4O00257 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
CBX4O00257 HORMAD2-201ENST00000336726 2187 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
CBX4O00257 CDC16-206ENST00000375310 2156 ntTSL 1 (best) BASIC22.68■■□□□ 1.22
CBX4O00257 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC22.68■■□□□ 1.22
CBX4O00257 SCUBE1-208ENST00000615096 1119 ntTSL 2 BASIC22.68■■□□□ 1.22
CBX4O00257 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC22.68■■□□□ 1.22
CBX4O00257 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
CBX4O00257 PEBP1-201ENST00000261313 1697 ntAPPRIS P1 TSL 1 (best) BASIC22.68■■□□□ 1.22
CBX4O00257 NUDT16L1-204ENST00000586536 1406 ntTSL 2 BASIC22.67■■□□□ 1.22
CBX4O00257 AF117829.1-201ENST00000519655 1398 ntTSL 5 BASIC22.67■■□□□ 1.22
CBX4O00257 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
CBX4O00257 SUDS3P1-201ENST00000505831 966 ntBASIC22.67■■□□□ 1.22
CBX4O00257 C15orf61-202ENST00000557807 769 ntTSL 2 BASIC22.67■■□□□ 1.22
CBX4O00257 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
CBX4O00257 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC22.67■■□□□ 1.22
CBX4O00257 SIX3-201ENST00000260653 2523 ntAPPRIS P1 TSL 1 (best) BASIC22.67■■□□□ 1.22
CBX4O00257 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC22.67■■□□□ 1.22
CBX4O00257 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC22.67■■□□□ 1.22
CBX4O00257 DAZAP1-201ENST00000233078 2160 ntAPPRIS P2 TSL 1 (best) BASIC22.66■■□□□ 1.22
CBX4O00257 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
CBX4O00257 LKAAEAR1-201ENST00000302096 761 ntAPPRIS ALT2 TSL 2 BASIC22.66■■□□□ 1.22
CBX4O00257 LKAAEAR1-202ENST00000308906 868 ntAPPRIS P2 TSL 1 (best) BASIC22.66■■□□□ 1.22
CBX4O00257 FGF8-204ENST00000347978 823 ntTSL 1 (best) BASIC22.66■■□□□ 1.22
CBX4O00257 IPO9-AS1-201ENST00000413035 839 ntTSL 3 BASIC22.66■■□□□ 1.22
CBX4O00257 AC026271.2-201ENST00000428091 497 ntBASIC22.66■■□□□ 1.22
CBX4O00257 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC22.66■■□□□ 1.22
CBX4O00257 NRIP3-203ENST00000531090 980 ntTSL 2 BASIC22.66■■□□□ 1.22
CBX4O00257 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC22.66■■□□□ 1.22
CBX4O00257 KLC1-201ENST00000246489 2294 ntAPPRIS P1 TSL 5 BASIC22.66■■□□□ 1.22
CBX4O00257 SYT8-201ENST00000341958 1556 ntAPPRIS ALT2 TSL 5 BASIC22.66■■□□□ 1.22
CBX4O00257 KCNC3-201ENST00000376959 5447 ntAPPRIS ALT2 TSL 5 BASIC22.66■■□□□ 1.22
CBX4O00257 KLC1-224ENST00000557450 2265 ntTSL 5 BASIC22.66■■□□□ 1.22
CBX4O00257 TTC9-201ENST00000256367 5217 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
CBX4O00257 FBXW4-201ENST00000331272 2483 ntAPPRIS P1 TSL 1 (best) BASIC22.66■■□□□ 1.22
CBX4O00257 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC22.65■■□□□ 1.22
CBX4O00257 ATP5A1-220ENST00000593152 2258 ntTSL 2 BASIC22.65■■□□□ 1.22
Retrieved 100 of 98,524 protein–RNA pairs in 26.9 ms