Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 LRRC3-AS1-201ENST00000426578 784 ntTSL 3 BASIC14.32□□□□□ -0.12
BDNFP23560 AL157392.3-204ENST00000440878 397 ntTSL 3 BASIC14.32□□□□□ -0.12
BDNFP23560 AC113391.2-201ENST00000512245 553 ntTSL 4 BASIC14.32□□□□□ -0.12
BDNFP23560 POLR2J3-217ENST00000513438 546 ntTSL 3 BASIC14.32□□□□□ -0.12
BDNFP23560 BCDIN3D-AS1-202ENST00000549124 468 ntTSL 3 BASIC14.32□□□□□ -0.12
BDNFP23560 AL139316.1-201ENST00000555643 568 ntTSL 3 BASIC14.32□□□□□ -0.12
BDNFP23560 ZSCAN10-205ENST00000572548 618 ntTSL 3 BASIC14.32□□□□□ -0.12
BDNFP23560 FO393412.1-201ENST00000619841 382 ntBASIC14.32□□□□□ -0.12
BDNFP23560 Z82244.1-201ENST00000631502 840 ntBASIC14.32□□□□□ -0.12
BDNFP23560 OSMR-AS1-204ENST00000636516 850 ntTSL 5 BASIC14.32□□□□□ -0.12
BDNFP23560 ERAL1-201ENST00000254928 1925 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
BDNFP23560 SYT1-204ENST00000457153 4592 ntAPPRIS ALT1 TSL 1 (best) BASIC14.32□□□□□ -0.12
BDNFP23560 RNF183-206ENST00000478815 2312 ntAPPRIS P1 BASIC14.32□□□□□ -0.12
BDNFP23560 APP-205ENST00000358918 2366 ntTSL 5 BASIC14.32□□□□□ -0.12
BDNFP23560 KIRREL1-204ENST00000368173 7519 ntTSL 2 BASIC14.32□□□□□ -0.12
BDNFP23560 RLIM-202ENST00000349225 3478 ntAPPRIS P1 TSL 2 BASIC14.32□□□□□ -0.12
BDNFP23560 DCHS1-201ENST00000299441 10765 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
BDNFP23560 MEX3B-201ENST00000329713 3528 ntAPPRIS P1 TSL 1 (best) BASIC14.32□□□□□ -0.12
BDNFP23560 AP001258.1-201ENST00000501817 2110 ntTSL 5 BASIC14.32□□□□□ -0.12
BDNFP23560 AC008040.5-201ENST00000599781 1781 ntBASIC14.32□□□□□ -0.12
BDNFP23560 NRP2-201ENST00000272849 5909 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
BDNFP23560 SYT12-201ENST00000393946 4534 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
BDNFP23560 RAPGEF3-205ENST00000449771 6061 ntAPPRIS ALT2 TSL 2 BASIC14.31□□□□□ -0.12
BDNFP23560 OTUD4-201ENST00000447906 3829 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
BDNFP23560 CYP26B1-201ENST00000001146 4732 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
BDNFP23560 KIR2DL3-201ENST00000342376 1590 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
BDNFP23560 ELAVL4-207ENST00000448907 1951 ntTSL 2 BASIC14.31□□□□□ -0.12
BDNFP23560 ABLIM2-215ENST00000545242 1972 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
BDNFP23560 PURA-201ENST00000331327 11497 ntAPPRIS P1 BASIC14.31□□□□□ -0.12
BDNFP23560 LRRC8D-201ENST00000337338 3950 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
BDNFP23560 CNN2-202ENST00000348419 2033 ntTSL 2 BASIC14.31□□□□□ -0.12
BDNFP23560 APLP2-203ENST00000338167 3270 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
BDNFP23560 POLN-210ENST00000511885 3253 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
BDNFP23560 AL139385.1-201ENST00000611744 3272 ntBASIC14.31□□□□□ -0.12
BDNFP23560 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
BDNFP23560 COL1A2-201ENST00000297268 5411 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
BDNFP23560 FCHO1-221ENST00000597512 2934 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
BDNFP23560 DDX19B-202ENST00000355992 1692 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
BDNFP23560 ALDOA-213ENST00000564595 1663 ntTSL 2 BASIC14.31□□□□□ -0.12
BDNFP23560 SDC2-201ENST00000302190 3759 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
BDNFP23560 ABCA7-202ENST00000433129 6704 ntAPPRIS P2 TSL 1 (best) BASIC14.31□□□□□ -0.12
BDNFP23560 NHP2-202ENST00000314397 599 ntTSL 2 BASIC14.31□□□□□ -0.12
BDNFP23560 VCX3A-202ENST00000398729 808 ntAPPRIS ALT2 TSL 5 BASIC14.31□□□□□ -0.12
BDNFP23560 AL355482.2-201ENST00000428646 1145 ntTSL 2 BASIC14.31□□□□□ -0.12
BDNFP23560 MUSTN1-202ENST00000486659 622 ntTSL 2 BASIC14.31□□□□□ -0.12
BDNFP23560 APOPT1-215ENST00000556253 783 ntTSL 3 BASIC14.31□□□□□ -0.12
BDNFP23560 HNRNPA1P5-201ENST00000558213 966 ntBASIC14.31□□□□□ -0.12
BDNFP23560 LINC00677-201ENST00000558224 486 ntTSL 3 BASIC14.31□□□□□ -0.12
BDNFP23560 LINC01996-201ENST00000573270 1273 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
BDNFP23560 LINC00511-205ENST00000578206 908 ntTSL 3 BASIC14.31□□□□□ -0.12
BDNFP23560 RN7SL134P-201ENST00000579756 303 ntBASIC14.31□□□□□ -0.12
BDNFP23560 C19orf70-203ENST00000587589 577 ntTSL 5 BASIC14.31□□□□□ -0.12
BDNFP23560 CRABP2-204ENST00000621784 1033 ntAPPRIS P1 TSL 3 BASIC14.31□□□□□ -0.12
BDNFP23560 RARS-210ENST00000626454 177 ntTSL 5 BASIC14.31□□□□□ -0.12
BDNFP23560 SREBF1-202ENST00000355815 4253 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
BDNFP23560 ZNF800-203ENST00000393313 4358 ntAPPRIS P1 TSL 5 BASIC14.31□□□□□ -0.12
BDNFP23560 GNAO1-214ENST00000638705 3529 ntAPPRIS P5 TSL 1 (best) BASIC14.31□□□□□ -0.12
BDNFP23560 ACIN1-201ENST00000262710 4935 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
BDNFP23560 SCYL1-205ENST00000524944 2715 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
BDNFP23560 PGAP2-202ENST00000300730 1843 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
BDNFP23560 PGAP2-203ENST00000396986 1837 ntTSL 2 BASIC14.31□□□□□ -0.12
BDNFP23560 TMEM123-201ENST00000361236 3321 ntAPPRIS ALT2 TSL 1 (best) BASIC14.31□□□□□ -0.12
BDNFP23560 RGS8-204ENST00000483095 1432 ntAPPRIS P1 TSL 2 BASIC14.31□□□□□ -0.12
BDNFP23560 KCNAB2-219ENST00000602612 2396 ntTSL 2 BASIC14.31□□□□□ -0.12
BDNFP23560 Z84468.1-201ENST00000626321 1408 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
BDNFP23560 ATXN7L1-207ENST00000477775 2426 ntTSL 2 BASIC14.31□□□□□ -0.12
BDNFP23560 PRMT5-202ENST00000324366 2531 ntAPPRIS P1 TSL 1 (best) BASIC14.31□□□□□ -0.12
BDNFP23560 LINC01744-201ENST00000457698 2042 ntTSL 2 BASIC14.31□□□□□ -0.12
BDNFP23560 PASK-201ENST00000234040 4572 ntAPPRIS P3 TSL 1 (best) BASIC14.31□□□□□ -0.12
BDNFP23560 MCF2L-209ENST00000397036 1544 ntTSL 2 BASIC14.31□□□□□ -0.12
BDNFP23560 TAOK2-204ENST00000543033 4072 ntTSL 1 (best) BASIC14.31□□□□□ -0.12
BDNFP23560 SMC6-201ENST00000351948 5173 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
BDNFP23560 CSNK1E-201ENST00000359867 2642 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
BDNFP23560 MLPH-201ENST00000264605 3823 ntAPPRIS P3 TSL 1 (best) BASIC14.3□□□□□ -0.12
BDNFP23560 IFT172-202ENST00000359466 2207 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
BDNFP23560 LINC01873-201ENST00000428647 1679 ntTSL 1 (best) BASIC14.3□□□□□ -0.12
BDNFP23560 PML-203ENST00000354026 2885 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
BDNFP23560 TMEM87B-201ENST00000283206 5212 ntAPPRIS P1 TSL 2 BASIC14.3□□□□□ -0.12
BDNFP23560 AP002986.1-201ENST00000602376 1763 ntTSL 5 BASIC14.3□□□□□ -0.12
BDNFP23560 SCFD1-203ENST00000458591 2359 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
BDNFP23560 PLCD1-204ENST00000463876 2963 ntAPPRIS ALT1 TSL 2 BASIC14.3□□□□□ -0.12
BDNFP23560 KIAA0319-204ENST00000537886 6622 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
BDNFP23560 ZNF277-201ENST00000361822 1849 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
BDNFP23560 XPO7-201ENST00000252512 4861 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
BDNFP23560 HIPK3-201ENST00000303296 7408 ntTSL 5 BASIC14.3□□□□□ -0.12
BDNFP23560 ANO10-205ENST00000414522 2450 ntTSL 2 BASIC14.3□□□□□ -0.12
BDNFP23560 CAMP-201ENST00000296435 745 ntAPPRIS P1 TSL 1 (best) BASIC14.3□□□□□ -0.12
BDNFP23560 SURF4-203ENST00000371991 715 ntTSL 3 BASIC14.3□□□□□ -0.12
BDNFP23560 OR51A9P-201ENST00000422578 911 ntBASIC14.3□□□□□ -0.12
BDNFP23560 KRT17P4-201ENST00000429445 819 ntBASIC14.3□□□□□ -0.12
BDNFP23560 CLDN25-201ENST00000453129 754 ntAPPRIS P1 BASIC14.3□□□□□ -0.12
BDNFP23560 AL445471.1-201ENST00000456316 820 ntTSL 5 BASIC14.3□□□□□ -0.12
BDNFP23560 AC063952.3-201ENST00000467756 308 ntBASIC14.3□□□□□ -0.12
BDNFP23560 AC091564.6-201ENST00000526633 487 ntTSL 3 BASIC14.3□□□□□ -0.12
BDNFP23560 LINC00301-203ENST00000527161 749 ntTSL 2 BASIC14.3□□□□□ -0.12
BDNFP23560 CMTM1-219ENST00000533953 934 ntAPPRIS ALT2 TSL 1 (best) BASIC14.3□□□□□ -0.12
BDNFP23560 LINC02376-201ENST00000536330 724 ntTSL 3 BASIC14.3□□□□□ -0.12
BDNFP23560 PRB3-202ENST00000538488 1283 ntAPPRIS P5 TSL 5 BASIC14.3□□□□□ -0.12
BDNFP23560 AC068397.2-201ENST00000558742 341 ntTSL 5 BASIC14.3□□□□□ -0.12
BDNFP23560 THY1-209ENST00000580275 578 ntTSL 3 BASIC14.3□□□□□ -0.12
Retrieved 100 of 98,524 protein–RNA pairs in 90.6 ms