Protein–RNA interactions for Protein: P12111

COL6A3, Collagen alpha-3(VI) chain, humanhuman

Predictions only

Length 3,177 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3P12111 NEK4-202ENST00000383721 2576 ntAPPRIS ALT2 TSL 1 (best) BASIC13.45□□□□□ -0.26
COL6A3P12111 PAPOLA-223ENST00000557320 3264 ntTSL 1 (best) BASIC13.45□□□□□ -0.26
COL6A3P12111 IFNAR2-201ENST00000342101 2606 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL6A3P12111 PIGC-202ENST00000367728 2630 ntAPPRIS P1 BASIC13.44□□□□□ -0.26
COL6A3P12111 TYRL-201ENST00000243152 441 ntBASIC13.44□□□□□ -0.26
COL6A3P12111 C17orf64-201ENST00000269127 950 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL6A3P12111 REG1B-201ENST00000305089 767 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL6A3P12111 AC004000.1-201ENST00000414435 433 ntTSL 5 BASIC13.44□□□□□ -0.26
COL6A3P12111 AL121761.1-203ENST00000426012 677 ntTSL 3 BASIC13.44□□□□□ -0.26
COL6A3P12111 TRERNA1-201ENST00000431460 462 ntTSL 2 BASIC13.44□□□□□ -0.26
COL6A3P12111 OR4A18P-201ENST00000529103 1088 ntBASIC13.44□□□□□ -0.26
COL6A3P12111 AC104758.4-201ENST00000565869 353 ntTSL 3 BASIC13.44□□□□□ -0.26
COL6A3P12111 MIR7-3HG-204ENST00000588758 865 ntTSL 3 BASIC13.44□□□□□ -0.26
COL6A3P12111 AC004080.4-201ENST00000602610 633 ntBASIC13.44□□□□□ -0.26
COL6A3P12111 AL157791.2-201ENST00000604758 478 ntBASIC13.44□□□□□ -0.26
COL6A3P12111 CBWD1-222ENST00000613508 1143 ntTSL 5 BASIC13.44□□□□□ -0.26
COL6A3P12111 AC006144.1-201ENST00000424220 1600 ntBASIC13.44□□□□□ -0.26
COL6A3P12111 AL138762.1-201ENST00000608554 1637 ntBASIC13.44□□□□□ -0.26
COL6A3P12111 GALC-206ENST00000544807 2528 ntTSL 2 BASIC13.44□□□□□ -0.26
COL6A3P12111 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL6A3P12111 AP1G2-201ENST00000308724 3298 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL6A3P12111 LINC01215-201ENST00000607746 2592 ntTSL 3 BASIC13.44□□□□□ -0.26
COL6A3P12111 AC004754.1-201ENST00000600536 2242 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
COL6A3P12111 RABIF-201ENST00000367262 2430 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL6A3P12111 AC009093.1-201ENST00000566070 2099 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
COL6A3P12111 FDX1-201ENST00000260270 3206 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL6A3P12111 CTNNB1-202ENST00000396183 3268 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL6A3P12111 WNT3A-201ENST00000284523 2932 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL6A3P12111 PRORSD1P-202ENST00000563365 2154 ntBASIC13.44□□□□□ -0.26
COL6A3P12111 IRAK1-202ENST00000369974 3319 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
COL6A3P12111 SPAG6-201ENST00000313311 2421 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
COL6A3P12111 OR4A5-201ENST00000319760 1071 ntAPPRIS P1 BASIC13.44□□□□□ -0.26
COL6A3P12111 MAPK12-202ENST00000395778 605 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
COL6A3P12111 GOT2P3-201ENST00000426641 1289 ntBASIC13.44□□□□□ -0.26
COL6A3P12111 AC051619.1-201ENST00000560007 616 ntBASIC13.44□□□□□ -0.26
COL6A3P12111 FAAP24-205ENST00000590281 865 ntAPPRIS P1 TSL 3 BASIC13.44□□□□□ -0.26
COL6A3P12111 AC243830.1-201ENST00000610398 455 ntTSL 3 BASIC13.44□□□□□ -0.26
COL6A3P12111 PXYLP1-201ENST00000286353 3281 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL6A3P12111 ZBTB37-202ENST00000367702 1337 ntTSL 5 BASIC13.44□□□□□ -0.26
COL6A3P12111 TBXAS1-201ENST00000336425 2185 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL6A3P12111 AC005885.1-204ENST00000637885 2885 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
COL6A3P12111 TPD52L2-206ENST00000358548 2275 ntTSL 2 BASIC13.44□□□□□ -0.26
COL6A3P12111 SIMC1-205ENST00000443967 3572 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL6A3P12111 ARSE-206ENST00000545496 2506 ntTSL 2 BASIC13.44□□□□□ -0.26
COL6A3P12111 CADPS-202ENST00000357948 5190 ntAPPRIS ALT2 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL6A3P12111 CRB2-201ENST00000359999 3659 ntTSL 2 BASIC13.44□□□□□ -0.26
COL6A3P12111 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC13.44□□□□□ -0.26
COL6A3P12111 KRT8P40-201ENST00000392131 563 ntBASIC13.44□□□□□ -0.26
COL6A3P12111 HNRNPA1P49-201ENST00000421336 904 ntBASIC13.44□□□□□ -0.26
COL6A3P12111 FRY-AS1-201ENST00000428419 1115 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
COL6A3P12111 MRPL2-203ENST00000468957 689 ntTSL 1 (best) BASIC13.44□□□□□ -0.26
COL6A3P12111 BTF3L4-205ENST00000489308 794 ntTSL 2 BASIC13.44□□□□□ -0.26
COL6A3P12111 AC093286.1-201ENST00000514761 656 ntBASIC13.44□□□□□ -0.26
COL6A3P12111 RNF139-AS1-202ENST00000519861 359 ntTSL 3 BASIC13.44□□□□□ -0.26
COL6A3P12111 RN7SL488P-201ENST00000585186 286 ntBASIC13.44□□□□□ -0.26
COL6A3P12111 SMIM11B-202ENST00000619874 843 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL6A3P12111 PBX3-203ENST00000373487 2902 ntTSL 5 BASIC13.44□□□□□ -0.26
COL6A3P12111 PRKAB1-201ENST00000229328 2610 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL6A3P12111 ATP6V0A4-201ENST00000310018 3135 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL6A3P12111 ISCA2-204ENST00000556816 2626 ntAPPRIS P1 TSL 1 (best) BASIC13.44□□□□□ -0.26
COL6A3P12111 DBR1-201ENST00000260803 2666 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL6A3P12111 EPB41L4A-AS1-201ENST00000413221 2969 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
COL6A3P12111 LGR6-205ENST00000439764 2487 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
COL6A3P12111 ST3GAL3-208ENST00000361392 2243 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL6A3P12111 GOLGA8EP-201ENST00000530246 1959 ntBASIC13.43□□□□□ -0.26
COL6A3P12111 LINC01744-201ENST00000457698 2042 ntTSL 2 BASIC13.43□□□□□ -0.26
COL6A3P12111 CELF1-214ENST00000531165 3650 ntTSL 2 BASIC13.43□□□□□ -0.26
COL6A3P12111 KRT75-201ENST00000252245 2324 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL6A3P12111 CPT1A-202ENST00000376618 2635 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
COL6A3P12111 TRPC6-206ENST00000532133 2648 ntTSL 5 BASIC13.43□□□□□ -0.26
COL6A3P12111 DMTN-214ENST00000519907 2658 ntTSL 5 BASIC13.43□□□□□ -0.26
COL6A3P12111 SNAPC5-202ENST00000316634 1002 ntAPPRIS P2 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL6A3P12111 USP17L6P-201ENST00000382470 1197 ntBASIC13.43□□□□□ -0.26
COL6A3P12111 KRTAP10-6-201ENST00000400368 1238 ntAPPRIS P1 BASIC13.43□□□□□ -0.26
COL6A3P12111 TXNRD3NB-201ENST00000404489 738 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL6A3P12111 HNRNPA1P19-201ENST00000405292 370 ntBASIC13.43□□□□□ -0.26
COL6A3P12111 ALDH7A1-203ENST00000413020 1126 ntTSL 2 BASIC13.43□□□□□ -0.26
COL6A3P12111 FAM86FP-202ENST00000427893 829 ntTSL 5 BASIC13.43□□□□□ -0.26
COL6A3P12111 RPS18-230ENST00000439602 613 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL6A3P12111 SNRK-204ENST00000454177 2961 ntAPPRIS P1 TSL 2 BASIC13.43□□□□□ -0.26
COL6A3P12111 RPS18-233ENST00000474973 589 ntTSL 2 BASIC13.43□□□□□ -0.26
COL6A3P12111 POU5F1-205ENST00000512818 1233 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
COL6A3P12111 HIF1A-AS1-201ENST00000557544 652 ntTSL 3 BASIC13.43□□□□□ -0.26
COL6A3P12111 PRSS1-207ENST00000619214 787 ntTSL 5 BASIC13.43□□□□□ -0.26
COL6A3P12111 RUVBL2-212ENST00000627972 1065 ntTSL 5 BASIC13.43□□□□□ -0.26
COL6A3P12111 TACC1-208ENST00000520340 1976 ntTSL 5 BASIC13.43□□□□□ -0.26
COL6A3P12111 REV1-201ENST00000258428 4751 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL6A3P12111 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL6A3P12111 MARK2-203ENST00000377810 4560 ntAPPRIS ALT2 TSL 5 BASIC13.43□□□□□ -0.26
COL6A3P12111 SDF2-201ENST00000247020 1568 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL6A3P12111 RGS6-202ENST00000355512 1564 ntAPPRIS ALT1 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL6A3P12111 CNKSR1-201ENST00000361530 2625 ntAPPRIS P3 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL6A3P12111 BPIFB9P-201ENST00000246222 1178 ntBASIC13.43□□□□□ -0.26
COL6A3P12111 KCNE1-205ENST00000416357 796 ntAPPRIS P1 TSL 1 (best) BASIC13.43□□□□□ -0.26
COL6A3P12111 RTN2-203ENST00000430715 1127 ntTSL 1 (best) BASIC13.43□□□□□ -0.26
COL6A3P12111 AL079352.1-201ENST00000547237 1042 ntBASIC13.43□□□□□ -0.26
COL6A3P12111 CIAPIN1P-201ENST00000584883 931 ntBASIC13.43□□□□□ -0.26
COL6A3P12111 BX255925.2-201ENST00000605600 515 ntBASIC13.43□□□□□ -0.26
COL6A3P12111 RAB5B-211ENST00000628569 496 ntTSL 5 BASIC13.43□□□□□ -0.26
COL6A3P12111 AP000439.3-201ENST00000545202 2376 ntTSL 2 BASIC13.43□□□□□ -0.26
Retrieved 100 of 98,524 protein–RNA pairs in 64.8 ms