Protein–RNA interactions for Protein: Q9C0C7

AMBRA1, Activating molecule in BECN1-regulated autophagy protein 1, humanhuman

Predictions only

Length 1,298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AMBRA1Q9C0C7 FBLN1-208ENST00000442170 2531 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
AMBRA1Q9C0C7 SCP2-203ENST00000371514 2811 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
AMBRA1Q9C0C7 HFE-201ENST00000309234 1158 ntAPPRIS ALT2 TSL 2 BASIC12.84□□□□□ -0.35
AMBRA1Q9C0C7 ERCC1-203ENST00000340192 949 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
AMBRA1Q9C0C7 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
AMBRA1Q9C0C7 NPPA-201ENST00000376476 728 ntTSL 3 BASIC12.84□□□□□ -0.35
AMBRA1Q9C0C7 CSH2-203ENST00000392886 920 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
AMBRA1Q9C0C7 LY6G6E-227ENST00000409239 776 ntAPPRIS ALT2 TSL 4 BASIC12.84□□□□□ -0.35
AMBRA1Q9C0C7 SSR4P1-201ENST00000415143 412 ntBASIC12.84□□□□□ -0.35
AMBRA1Q9C0C7 DMAC2-203ENST00000417807 1065 ntTSL 2 BASIC12.84□□□□□ -0.35
AMBRA1Q9C0C7 TSPY25P-201ENST00000429463 745 ntBASIC12.84□□□□□ -0.35
AMBRA1Q9C0C7 NKAIN1P1-201ENST00000435754 582 ntBASIC12.84□□□□□ -0.35
AMBRA1Q9C0C7 OAZ3-203ENST00000453029 729 ntTSL 5 BASIC12.84□□□□□ -0.35
AMBRA1Q9C0C7 APOPT1-207ENST00000477116 906 ntTSL 3 BASIC12.84□□□□□ -0.35
AMBRA1Q9C0C7 Z84485.1-202ENST00000499560 1230 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
AMBRA1Q9C0C7 AC005740.2-201ENST00000511085 419 ntBASIC12.84□□□□□ -0.35
AMBRA1Q9C0C7 SCARNA20.5-201ENST00000516991 142 ntBASIC12.84□□□□□ -0.35
AMBRA1Q9C0C7 AC044849.1-201ENST00000519737 1188 ntBASIC12.84□□□□□ -0.35
AMBRA1Q9C0C7 CSH2-206ENST00000560142 749 ntTSL 5 BASIC12.84□□□□□ -0.35
AMBRA1Q9C0C7 SYT17-208ENST00000568433 812 ntTSL 3 BASIC12.84□□□□□ -0.35
AMBRA1Q9C0C7 SNORD3B-2-202ENST00000571722 791 ntBASIC12.84□□□□□ -0.35
AMBRA1Q9C0C7 AC008133.1-201ENST00000584688 557 ntTSL 4 BASIC12.84□□□□□ -0.35
AMBRA1Q9C0C7 AP005264.3-201ENST00000592370 485 ntTSL 5 BASIC12.84□□□□□ -0.35
AMBRA1Q9C0C7 CASC4-201ENST00000299957 3962 ntAPPRIS P4 TSL 1 (best) BASIC12.84□□□□□ -0.35
AMBRA1Q9C0C7 PAX8-203ENST00000348715 3966 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
AMBRA1Q9C0C7 SYNJ2-208ENST00000640338 3959 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
AMBRA1Q9C0C7 EFR3B-205ENST00000405108 2432 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
AMBRA1Q9C0C7 CTR9-201ENST00000361367 4586 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
AMBRA1Q9C0C7 KIR2DL3-201ENST00000342376 1590 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
AMBRA1Q9C0C7 MTMR3-204ENST00000401950 6018 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
AMBRA1Q9C0C7 MEP1A-201ENST00000230588 2892 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
AMBRA1Q9C0C7 RBM15-202ENST00000487146 3316 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
AMBRA1Q9C0C7 HMBOX1-203ENST00000397358 4082 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
AMBRA1Q9C0C7 ELMOD3-206ENST00000409890 2492 ntAPPRIS P1 TSL 5 BASIC12.84□□□□□ -0.35
AMBRA1Q9C0C7 TMEM248-201ENST00000341567 4229 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
AMBRA1Q9C0C7 VENTX-201ENST00000325980 2911 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
AMBRA1Q9C0C7 STAM2-201ENST00000263904 5701 ntAPPRIS P1 TSL 1 (best) BASIC12.84□□□□□ -0.35
AMBRA1Q9C0C7 COL2A1-201ENST00000337299 4257 ntAPPRIS P3 TSL 1 (best) BASIC12.84□□□□□ -0.35
AMBRA1Q9C0C7 NUSAP1-208ENST00000559596 1629 ntAPPRIS P4 TSL 1 (best) BASIC12.84□□□□□ -0.35
AMBRA1Q9C0C7 ZNF556-202ENST00000586426 1643 ntAPPRIS ALT2 TSL 1 (best) BASIC12.84□□□□□ -0.35
AMBRA1Q9C0C7 ARHGEF9-220ENST00000635729 1761 ntTSL 5 BASIC12.84□□□□□ -0.35
AMBRA1Q9C0C7 AC000068.1-201ENST00000431090 2097 ntTSL 2 BASIC12.84□□□□□ -0.35
AMBRA1Q9C0C7 BCL2L1-202ENST00000376055 2383 ntTSL 2 BASIC12.84□□□□□ -0.35
AMBRA1Q9C0C7 LGR5-202ENST00000536515 2664 ntTSL 1 (best) BASIC12.84□□□□□ -0.35
AMBRA1Q9C0C7 TCAF2-205ENST00000444908 2976 ntTSL 5 BASIC12.84□□□□□ -0.35
AMBRA1Q9C0C7 SIRPA-203ENST00000400068 4201 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.35
AMBRA1Q9C0C7 TRPM5-201ENST00000155858 3929 ntAPPRIS P2 TSL 1 (best) BASIC12.83□□□□□ -0.35
AMBRA1Q9C0C7 LINC01209-201ENST00000451289 2400 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
AMBRA1Q9C0C7 HPSE2-202ENST00000370549 2121 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
AMBRA1Q9C0C7 SLC25A31-201ENST00000281154 1841 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.35
AMBRA1Q9C0C7 EFHD1-203ENST00000409708 1817 ntTSL 2 BASIC12.83□□□□□ -0.35
AMBRA1Q9C0C7 AC098934.1-201ENST00000443294 1835 ntTSL 1 (best) BASIC12.83□□□□□ -0.35
AMBRA1Q9C0C7 KAAG1-201ENST00000274766 1382 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 C3orf38-201ENST00000318887 2633 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 FAM9C-205ENST00000542843 5858 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 CLUAP1-202ENST00000571025 5126 ntTSL 2 BASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 JMJD6-203ENST00000445478 5303 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 ENTPD3-204ENST00000456402 1749 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 PDE1B-203ENST00000538346 1711 ntTSL 2 BASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 CEP63-215ENST00000606977 2800 ntAPPRIS P3 TSL 5 BASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 JMJD6-208ENST00000617192 5517 ntTSL 5 BASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 HOXB13-201ENST00000290295 3467 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 SLC47A1-206ENST00000571335 1415 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 CHAT-212ENST00000640822 1412 ntTSL 5 BASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 WNT5A-202ENST00000474267 6042 ntAPPRIS P1 TSL 5 BASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 STK38L-201ENST00000389032 5068 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 ANAPC7-203ENST00000455511 3045 ntAPPRIS P3 TSL 1 (best) BASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 SEC61B-201ENST00000223641 545 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 IER3-201ENST00000259874 1244 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 ZCCHC13-201ENST00000339534 842 ntAPPRIS P1 BASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 NFYC-202ENST00000372651 1202 ntAPPRIS P3 TSL 5 BASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 BAX-205ENST00000391871 687 ntTSL 5 BASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 TPT1-AS1-203ENST00000412946 744 ntTSL 3 BASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 FGF13-204ENST00000436198 1165 ntTSL 2 BASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 ALKBH2-203ENST00000440112 574 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 SEPT7P2-209ENST00000450436 601 ntTSL 4 BASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 AL139412.1-202ENST00000452465 675 ntTSL 3 BASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 HOXB-AS3-209ENST00000477144 743 ntTSL 5 BASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 SEC61B-203ENST00000498603 587 ntTSL 3 BASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 AC108142.1-201ENST00000505389 286 ntTSL 3 BASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 MARK2P5-201ENST00000507649 634 ntBASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 PAGE3-202ENST00000519203 577 ntAPPRIS P1 TSL 1 (best) BASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 RPL27A-202ENST00000524496 558 ntTSL 3 BASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 FAM86B1-218ENST00000534520 808 ntTSL 2 BASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 TSHR-205ENST00000554263 1184 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 TSHR-206ENST00000554435 1089 ntTSL 1 (best) BASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 AL132642.1-201ENST00000557646 553 ntTSL 4 BASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 EID1-202ENST00000560490 584 ntTSL 3 BASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 AC115099.1-201ENST00000570413 362 ntTSL 3 BASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 AC129507.4-201ENST00000570501 411 ntTSL 2 BASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 AC010754.1-201ENST00000582300 1061 ntTSL 3 BASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 AC020914.3-201ENST00000594712 304 ntBASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 AL451050.2-201ENST00000606967 682 ntBASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 AL022334.2-201ENST00000610000 484 ntBASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 AC090164.2-201ENST00000611487 516 ntBASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 AC138649.2-201ENST00000615886 705 ntBASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 AL136295.7-201ENST00000619226 1200 ntBASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 AC079336.7-201ENST00000623428 1078 ntBASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 AC091181.1-201ENST00000623762 2098 ntBASIC12.83□□□□□ -0.36
AMBRA1Q9C0C7 RAB37-202ENST00000392610 2858 ntTSL 3 BASIC12.83□□□□□ -0.36
Retrieved 100 of 98,524 protein–RNA pairs in 37.1 ms