Protein–RNA interactions for Protein: P09429

HMGB1, High mobility group protein B1, humanhuman

Known RBP Predictions only

Length 215 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P09429 AL139339.1-201ENST00000411906 657 ntTSL 2 BASIC16.15■□□□□ 0.18
HMGB1P09429 LINC01623-201ENST00000440244 2458 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB1P09429 SOX9-AS1-207ENST00000446332 443 ntTSL 2 BASIC16.15■□□□□ 0.18
HMGB1P09429 KRT18P62-201ENST00000446618 1287 ntBASIC16.15■□□□□ 0.18
HMGB1P09429 RGS5-216ENST00000449680 788 ntTSL 3 BASIC16.15■□□□□ 0.18
HMGB1P09429 DMKN-229ENST00000467637 827 ntAPPRIS ALT2 TSL 5 BASIC16.15■□□□□ 0.18
HMGB1P09429 AC069185.1-202ENST00000533405 471 ntTSL 3 BASIC16.15■□□□□ 0.18
HMGB1P09429 SERPINA4-203ENST00000557004 2012 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB1P09429 AC016044.1-201ENST00000560818 572 ntTSL 4 BASIC16.15■□□□□ 0.18
HMGB1P09429 AL031282.1-201ENST00000577672 409 ntTSL 3 BASIC16.15■□□□□ 0.18
HMGB1P09429 LDLRAD4-AS1-201ENST00000588672 2190 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB1P09429 AL133499.1-201ENST00000596207 608 ntBASIC16.15■□□□□ 0.18
HMGB1P09429 Z82244.1-201ENST00000631502 840 ntBASIC16.15■□□□□ 0.18
HMGB1P09429 TUBGCP3-201ENST00000261965 3899 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB1P09429 ADAR-202ENST00000368474 6625 ntAPPRIS P3 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB1P09429 EGR2-201ENST00000242480 2968 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB1P09429 FOXN4-202ENST00000355216 2958 ntTSL 2 BASIC16.15■□□□□ 0.18
HMGB1P09429 ZNF721-205ENST00000511833 2966 ntAPPRIS P1 TSL 4 BASIC16.15■□□□□ 0.18
HMGB1P09429 PNPLA5-205ENST00000597664 2537 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB1P09429 MMD2-203ENST00000406755 2372 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB1P09429 LINC00940-201ENST00000418006 2350 ntTSL 2 BASIC16.15■□□□□ 0.18
HMGB1P09429 GMEB2-203ENST00000370077 4223 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB1P09429 DAO-201ENST00000228476 1756 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB1P09429 BRWD1-201ENST00000333229 10141 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB1P09429 TSN-212ENST00000536142 3328 ntTSL 2 BASIC16.15■□□□□ 0.18
HMGB1P09429 GPT2-201ENST00000340124 3984 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB1P09429 LINC01756-201ENST00000417651 2148 ntTSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB1P09429 PAAF1-201ENST00000310571 4994 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB1P09429 NXPH1-201ENST00000405863 2921 ntAPPRIS P1 TSL 1 (best) BASIC16.15■□□□□ 0.18
HMGB1P09429 DNAJC30-201ENST00000395176 2485 ntAPPRIS P1 BASIC16.14■□□□□ 0.18
HMGB1P09429 SRSF1-205ENST00000582730 3117 ntTSL 2 BASIC16.14■□□□□ 0.18
HMGB1P09429 FASN-201ENST00000306749 8565 ntAPPRIS P2 TSL 1 (best) BASIC16.14■□□□□ 0.18
HMGB1P09429 SHOX-202ENST00000381575 1351 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HMGB1P09429 TCL1A-201ENST00000402399 1395 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HMGB1P09429 RBM26-203ENST00000438737 4132 ntTSL 5 BASIC16.14■□□□□ 0.17
HMGB1P09429 NTRK3-AS1-201ENST00000569588 2663 ntTSL 2 BASIC16.14■□□□□ 0.17
HMGB1P09429 FUBP1-202ENST00000370767 2524 ntTSL 5 BASIC16.14■□□□□ 0.17
HMGB1P09429 PHTF2-204ENST00000415251 1738 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HMGB1P09429 OSBPL5-201ENST00000263650 3889 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HMGB1P09429 CCDC169-SOHLH2-201ENST00000511166 2051 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
HMGB1P09429 AP000437.1-201ENST00000624057 2085 ntBASIC16.14■□□□□ 0.17
HMGB1P09429 KIAA0895L-201ENST00000290881 3550 ntAPPRIS P1 TSL 5 BASIC16.14■□□□□ 0.17
HMGB1P09429 HBP1-212ENST00000485846 2420 ntAPPRIS P1 TSL 2 BASIC16.14■□□□□ 0.17
HMGB1P09429 AC107918.4-201ENST00000641966 3141 ntBASIC16.14■□□□□ 0.17
HMGB1P09429 GRM5-AS1-201ENST00000526448 4821 ntTSL 5 BASIC16.14■□□□□ 0.17
HMGB1P09429 CEMIP-201ENST00000220244 7226 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HMGB1P09429 PGAM2-201ENST00000297283 857 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HMGB1P09429 RPP40-201ENST00000319533 1088 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HMGB1P09429 EPPIN-201ENST00000336443 1217 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HMGB1P09429 SNPH-201ENST00000381867 5533 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
HMGB1P09429 IL18BP-206ENST00000393707 1037 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HMGB1P09429 NME6-203ENST00000415644 849 ntTSL 2 BASIC16.14■□□□□ 0.17
HMGB1P09429 ACYP2-204ENST00000422521 1115 ntTSL 5 BASIC16.14■□□□□ 0.17
HMGB1P09429 CTCFL-208ENST00000432255 2955 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HMGB1P09429 UPF3AP2-201ENST00000457924 1132 ntBASIC16.14■□□□□ 0.17
HMGB1P09429 RN7SL375P-201ENST00000492442 298 ntBASIC16.14■□□□□ 0.17
HMGB1P09429 LINC02062-201ENST00000513175 478 ntTSL 3 BASIC16.14■□□□□ 0.17
HMGB1P09429 STMN4-207ENST00000523048 1224 ntTSL 2 BASIC16.14■□□□□ 0.17
HMGB1P09429 AHNAK-205ENST00000530124 701 ntAPPRIS ALT2 TSL 3 BASIC16.14■□□□□ 0.17
HMGB1P09429 NEU3-205ENST00000531619 582 ntTSL 5 BASIC16.14■□□□□ 0.17
HMGB1P09429 PLEKHA8P1-203ENST00000545609 277 ntTSL 3 BASIC16.14■□□□□ 0.17
HMGB1P09429 NAA38-204ENST00000575208 529 ntTSL 3 BASIC16.14■□□□□ 0.17
HMGB1P09429 TMEM98-205ENST00000578289 806 ntTSL 3 BASIC16.14■□□□□ 0.17
HMGB1P09429 MIR3907-201ENST00000579424 151 ntBASIC16.14■□□□□ 0.17
HMGB1P09429 IFT20-214ENST00000585089 1071 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HMGB1P09429 AC020934.2-201ENST00000592400 456 ntTSL 3 BASIC16.14■□□□□ 0.17
HMGB1P09429 AL591926.3-201ENST00000611630 238 ntBASIC16.14■□□□□ 0.17
HMGB1P09429 AC011491.1-203ENST00000637688 543 ntBASIC16.14■□□□□ 0.17
HMGB1P09429 PXK-210ENST00000479241 2817 ntTSL 2 BASIC16.14■□□□□ 0.17
HMGB1P09429 IFT172-203ENST00000416524 1982 ntTSL 2 BASIC16.14■□□□□ 0.17
HMGB1P09429 SAFB-211ENST00000592224 3014 ntAPPRIS ALT2 TSL 1 (best) BASIC16.14■□□□□ 0.17
HMGB1P09429 RBM22P2-201ENST00000393978 1814 ntBASIC16.14■□□□□ 0.17
HMGB1P09429 HSPA1L-201ENST00000375654 2544 ntAPPRIS P1 TSL 1 (best) BASIC16.14■□□□□ 0.17
HMGB1P09429 TP73-211ENST00000604074 4806 ntTSL 5 BASIC16.14■□□□□ 0.17
HMGB1P09429 AGAP1-201ENST00000304032 10832 ntAPPRIS ALT2 TSL 5 BASIC16.14■□□□□ 0.17
HMGB1P09429 SLC6A10P-201ENST00000330048 3846 ntTSL 2 BASIC16.14■□□□□ 0.17
HMGB1P09429 SPAAR-203ENST00000636776 1538 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
HMGB1P09429 OR4K13-203ENST00000641904 5684 ntAPPRIS P1 BASIC16.14■□□□□ 0.17
HMGB1P09429 FAIM2-205ENST00000550890 2094 ntTSL 2 BASIC16.14■□□□□ 0.17
HMGB1P09429 LANCL3-202ENST00000378621 10298 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HMGB1P09429 SLC23A1-201ENST00000348729 2299 ntTSL 1 (best) BASIC16.14■□□□□ 0.17
HMGB1P09429 C12orf66-201ENST00000311915 2698 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HMGB1P09429 SLC35B3-201ENST00000379660 2137 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HMGB1P09429 DYNC1I2-204ENST00000409317 2196 ntTSL 5 BASIC16.13■□□□□ 0.17
HMGB1P09429 AC060814.4-201ENST00000594169 2163 ntBASIC16.13■□□□□ 0.17
HMGB1P09429 AC239809.3-201ENST00000599640 4266 ntTSL 5 BASIC16.13■□□□□ 0.17
HMGB1P09429 AC125611.4-201ENST00000553259 4166 ntTSL 2 BASIC16.13■□□□□ 0.17
HMGB1P09429 MINDY1-207ENST00000622754 2637 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HMGB1P09429 SOD2-202ENST00000367054 815 ntTSL 2 BASIC16.13■□□□□ 0.17
HMGB1P09429 HCRTR1-201ENST00000373705 1170 ntTSL 1 (best) BASIC16.13■□□□□ 0.17
HMGB1P09429 IGHV3-21-201ENST00000390607 430 ntAPPRIS P1 BASIC16.13■□□□□ 0.17
HMGB1P09429 CFL1P6-201ENST00000400899 494 ntBASIC16.13■□□□□ 0.17
HMGB1P09429 AL357079.1-203ENST00000412378 494 ntTSL 5 BASIC16.13■□□□□ 0.17
HMGB1P09429 LINC00466-203ENST00000436475 1059 ntTSL 5 BASIC16.13■□□□□ 0.17
HMGB1P09429 BANF1-202ENST00000445560 946 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.17
HMGB1P09429 LAMTOR4-209ENST00000488241 613 ntTSL 2 BASIC16.13■□□□□ 0.17
HMGB1P09429 LINC00461-207ENST00000506978 564 ntTSL 5 BASIC16.13■□□□□ 0.17
HMGB1P09429 AC100858.1-201ENST00000514059 1228 ntBASIC16.13■□□□□ 0.17
HMGB1P09429 ANXA5-210ENST00000515017 1190 ntTSL 5 BASIC16.13■□□□□ 0.17
HMGB1P09429 TMEM218-205ENST00000527271 706 ntAPPRIS P1 TSL 2 BASIC16.13■□□□□ 0.17
Retrieved 100 of 98,524 protein–RNA pairs in 59.5 ms