Protein–RNA interactions for Protein: Q8TBC3

SHKBP1, SH3KBP1-binding protein 1, humanhuman

Predictions only

Length 707 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1Q8TBC3 SLC39A11-202ENST00000542342 2752 ntAPPRIS ALT1 TSL 2 BASIC14.38□□□□□ -0.11
SHKBP1Q8TBC3 SYMPK-213ENST00000599460 5449 ntTSL 1 (best) BASIC14.38□□□□□ -0.11
SHKBP1Q8TBC3 RTFDC1-201ENST00000023939 1745 ntTSL 2 BASIC14.38□□□□□ -0.11
SHKBP1Q8TBC3 CHRNA2-201ENST00000240132 1735 ntAPPRIS ALT2 TSL 2 BASIC14.38□□□□□ -0.11
SHKBP1Q8TBC3 MAP3K12-203ENST00000547035 2944 ntAPPRIS ALT2 TSL 5 BASIC14.38□□□□□ -0.11
SHKBP1Q8TBC3 INO80-201ENST00000361937 6439 ntAPPRIS P1 TSL 5 BASIC14.38□□□□□ -0.11
SHKBP1Q8TBC3 TNIP3-201ENST00000057513 2416 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
SHKBP1Q8TBC3 ABCB9-203ENST00000346530 3399 ntTSL 5 BASIC14.37□□□□□ -0.11
SHKBP1Q8TBC3 RPP30-202ENST00000371703 2589 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SHKBP1Q8TBC3 IGDCC3-201ENST00000327987 4479 ntAPPRIS P2 TSL 1 (best) BASIC14.37□□□□□ -0.11
SHKBP1Q8TBC3 ZDHHC8-203ENST00000405930 3112 ntTSL 2 BASIC14.37□□□□□ -0.11
SHKBP1Q8TBC3 PIGV-202ENST00000374145 2713 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
SHKBP1Q8TBC3 CSF2RB-203ENST00000406230 2895 ntAPPRIS ALT2 TSL 1 (best) BASIC14.37□□□□□ -0.11
SHKBP1Q8TBC3 SPATA6-204ENST00000396199 4964 ntTSL 2 BASIC14.37□□□□□ -0.11
SHKBP1Q8TBC3 CCDC6-201ENST00000263102 5811 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SHKBP1Q8TBC3 SH3D21-205ENST00000505871 2205 ntTSL 2 BASIC14.37□□□□□ -0.11
SHKBP1Q8TBC3 ICOSLG-202ENST00000400377 2907 ntTSL 2 BASIC14.37□□□□□ -0.11
SHKBP1Q8TBC3 AGFG1-204ENST00000409315 2912 ntTSL 5 BASIC14.37□□□□□ -0.11
SHKBP1Q8TBC3 NUTM2E-202ENST00000602967 3623 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
SHKBP1Q8TBC3 VPS36-207ENST00000611132 4607 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SHKBP1Q8TBC3 NGEF-201ENST00000264051 3215 ntTSL 1 (best) BASIC14.37□□□□□ -0.11
SHKBP1Q8TBC3 CAMKV-202ENST00000463537 2818 ntTSL 5 BASIC14.37□□□□□ -0.11
SHKBP1Q8TBC3 ZNF70-201ENST00000341976 6924 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SHKBP1Q8TBC3 AC106827.1-201ENST00000366454 431 ntBASIC14.37□□□□□ -0.11
SHKBP1Q8TBC3 TSC22D3-202ENST00000372382 1216 ntTSL 3 BASIC14.37□□□□□ -0.11
SHKBP1Q8TBC3 HIST1H4B-201ENST00000377745 438 ntAPPRIS P1 BASIC14.37□□□□□ -0.11
SHKBP1Q8TBC3 AL080243.1-201ENST00000423293 1060 ntBASIC14.37□□□□□ -0.11
SHKBP1Q8TBC3 AC116609.2-201ENST00000431542 256 ntTSL 5 BASIC14.37□□□□□ -0.11
SHKBP1Q8TBC3 AC005014.1-201ENST00000432006 2976 ntBASIC14.37□□□□□ -0.11
SHKBP1Q8TBC3 AL132657.1-201ENST00000432530 712 ntTSL 3 BASIC14.37□□□□□ -0.11
SHKBP1Q8TBC3 AL121787.1-202ENST00000445838 876 ntTSL 5 BASIC14.37□□□□□ -0.11
SHKBP1Q8TBC3 AC079250.1-201ENST00000456046 531 ntBASIC14.37□□□□□ -0.11
SHKBP1Q8TBC3 SIX3-AS1-202ENST00000456467 557 ntTSL 2 BASIC14.37□□□□□ -0.11
SHKBP1Q8TBC3 CASP3-205ENST00000517513 964 ntTSL 5 BASIC14.37□□□□□ -0.11
SHKBP1Q8TBC3 AC023968.2-201ENST00000560593 1049 ntBASIC14.37□□□□□ -0.11
SHKBP1Q8TBC3 TYMSP2-201ENST00000589501 424 ntBASIC14.37□□□□□ -0.11
SHKBP1Q8TBC3 RPL18A-203ENST00000599870 1084 ntTSL 2 BASIC14.37□□□□□ -0.11
SHKBP1Q8TBC3 RNF103-CHMP3-202ENST00000604011 1135 ntAPPRIS P1 TSL 2 BASIC14.37□□□□□ -0.11
SHKBP1Q8TBC3 STAG3L1-204ENST00000619870 1192 ntTSL 2 BASIC14.37□□□□□ -0.11
SHKBP1Q8TBC3 Metazoa_SRP.200-201ENST00000622073 282 ntBASIC14.37□□□□□ -0.11
SHKBP1Q8TBC3 HTR4-213ENST00000631296 1224 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SHKBP1Q8TBC3 ALDOA-202ENST00000395240 1447 ntAPPRIS ALT1 TSL 5 BASIC14.37□□□□□ -0.11
SHKBP1Q8TBC3 MKRN2-202ENST00000411987 1436 ntTSL 2 BASIC14.37□□□□□ -0.11
SHKBP1Q8TBC3 CHD4-201ENST00000357008 6496 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
SHKBP1Q8TBC3 SLCO4C1-201ENST00000310954 5334 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SHKBP1Q8TBC3 COL11A2-203ENST00000374708 6209 ntAPPRIS P2 TSL 5 BASIC14.37□□□□□ -0.11
SHKBP1Q8TBC3 MICAL1-202ENST00000358807 3645 ntAPPRIS P3 TSL 1 (best) BASIC14.37□□□□□ -0.11
SHKBP1Q8TBC3 COL11A2-202ENST00000361917 6104 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
SHKBP1Q8TBC3 FUNDC2-201ENST00000369498 6455 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SHKBP1Q8TBC3 LAMP5-202ENST00000427562 1309 ntTSL 2 BASIC14.37□□□□□ -0.11
SHKBP1Q8TBC3 VWA5B2-202ENST00000426955 4120 ntAPPRIS P1 TSL 1 (best) BASIC14.37□□□□□ -0.11
SHKBP1Q8TBC3 FMO6P-201ENST00000236166 1620 ntBASIC14.37□□□□□ -0.11
SHKBP1Q8TBC3 SBF1P1-201ENST00000444527 5631 ntBASIC14.37□□□□□ -0.11
SHKBP1Q8TBC3 NEK3-210ENST00000620675 2072 ntAPPRIS ALT2 TSL 5 BASIC14.37□□□□□ -0.11
SHKBP1Q8TBC3 AC072061.1-201ENST00000569710 2234 ntBASIC14.37□□□□□ -0.11
SHKBP1Q8TBC3 DNMT3B-204ENST00000353855 4237 ntTSL 5 BASIC14.36□□□□□ -0.11
SHKBP1Q8TBC3 HS3ST5-201ENST00000312719 3901 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
SHKBP1Q8TBC3 ENG-202ENST00000373203 3048 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
SHKBP1Q8TBC3 ANKS1B-208ENST00000547010 2595 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SHKBP1Q8TBC3 LARP7-202ENST00000344442 2286 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
SHKBP1Q8TBC3 VASH1-AS1-202ENST00000556072 1684 ntTSL 2 BASIC14.36□□□□□ -0.11
SHKBP1Q8TBC3 SPAAR-203ENST00000636776 1538 ntAPPRIS P1 BASIC14.36□□□□□ -0.11
SHKBP1Q8TBC3 POLR1C-203ENST00000372389 1355 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SHKBP1Q8TBC3 TTC7A-202ENST00000394850 4306 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SHKBP1Q8TBC3 ZNF75A-205ENST00000574298 2347 ntAPPRIS P1 TSL 2 BASIC14.36□□□□□ -0.11
SHKBP1Q8TBC3 PCK2-216ENST00000561286 2012 ntTSL 2 BASIC14.36□□□□□ -0.11
SHKBP1Q8TBC3 AC090643.2-201ENST00000623442 2029 ntBASIC14.36□□□□□ -0.11
SHKBP1Q8TBC3 RNF216-202ENST00000389902 3293 ntAPPRIS P4 TSL 1 (best) BASIC14.36□□□□□ -0.11
SHKBP1Q8TBC3 DLGAP4-202ENST00000340491 2392 ntAPPRIS ALT2 TSL 1 (best) BASIC14.36□□□□□ -0.11
SHKBP1Q8TBC3 RUFY4-201ENST00000344321 2352 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
SHKBP1Q8TBC3 ABCC10-201ENST00000244533 5088 ntAPPRIS P3 TSL 1 (best) BASIC14.36□□□□□ -0.11
SHKBP1Q8TBC3 ATE1-201ENST00000224652 4930 ntAPPRIS P5 TSL 1 (best) BASIC14.36□□□□□ -0.11
SHKBP1Q8TBC3 HDAC7-209ENST00000427332 3016 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
SHKBP1Q8TBC3 U3.5-201ENST00000363448 216 ntBASIC14.36□□□□□ -0.11
SHKBP1Q8TBC3 RPL10-202ENST00000369817 1284 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
SHKBP1Q8TBC3 RBM4-203ENST00000398692 921 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SHKBP1Q8TBC3 RPL10-203ENST00000406022 748 ntTSL 3 BASIC14.36□□□□□ -0.11
SHKBP1Q8TBC3 IQCF4-202ENST00000422896 745 ntTSL 2 BASIC14.36□□□□□ -0.11
SHKBP1Q8TBC3 AC041040.1-201ENST00000425197 460 ntBASIC14.36□□□□□ -0.11
SHKBP1Q8TBC3 AL929302.1-201ENST00000426556 871 ntBASIC14.36□□□□□ -0.11
SHKBP1Q8TBC3 MED19-202ENST00000431606 1203 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SHKBP1Q8TBC3 AL365500.1-201ENST00000442783 868 ntTSL 3 BASIC14.36□□□□□ -0.11
SHKBP1Q8TBC3 AC007279.1-201ENST00000448547 837 ntBASIC14.36□□□□□ -0.11
SHKBP1Q8TBC3 GH2-203ENST00000449787 753 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SHKBP1Q8TBC3 RBM4-207ENST00000506523 654 ntTSL 3 BASIC14.36□□□□□ -0.11
SHKBP1Q8TBC3 MEF2C-AS2-201ENST00000510274 463 ntTSL 5 BASIC14.36□□□□□ -0.11
SHKBP1Q8TBC3 AC073569.2-201ENST00000551995 354 ntTSL 5 BASIC14.36□□□□□ -0.11
SHKBP1Q8TBC3 AC015712.5-201ENST00000558568 564 ntTSL 2 BASIC14.36□□□□□ -0.11
SHKBP1Q8TBC3 PELP1-201ENST00000301396 3673 ntAPPRIS P2 TSL 1 (best) BASIC14.36□□□□□ -0.11
SHKBP1Q8TBC3 CAMK2D-205ENST00000394524 5294 ntAPPRIS ALT1 TSL 2 BASIC14.36□□□□□ -0.11
SHKBP1Q8TBC3 FOXP3-204ENST00000455775 2448 ntTSL 5 BASIC14.36□□□□□ -0.11
SHKBP1Q8TBC3 AC004846.1-201ENST00000554614 3050 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SHKBP1Q8TBC3 POU5F1B-201ENST00000465342 5360 ntAPPRIS P1 TSL 3 BASIC14.36□□□□□ -0.11
SHKBP1Q8TBC3 AC239799.1-201ENST00000612520 3411 ntAPPRIS P1 TSL 5 BASIC14.36□□□□□ -0.11
SHKBP1Q8TBC3 SCAMP1-AS1-201ENST00000421004 1479 ntTSL 1 (best) BASIC14.36□□□□□ -0.11
SHKBP1Q8TBC3 PATL2-201ENST00000434130 1950 ntAPPRIS P3 TSL 5 BASIC14.36□□□□□ -0.11
SHKBP1Q8TBC3 CDH16-201ENST00000299752 2954 ntAPPRIS P1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SHKBP1Q8TBC3 HNRNPLL-205ENST00000409636 3980 ntTSL 2 BASIC14.36□□□□□ -0.11
SHKBP1Q8TBC3 LIMS1-215ENST00000544547 4461 ntAPPRIS ALT1 TSL 1 (best) BASIC14.36□□□□□ -0.11
SHKBP1Q8TBC3 KANK2-205ENST00000589359 3048 ntAPPRIS ALT2 TSL 5 BASIC14.36□□□□□ -0.11
Retrieved 100 of 98,524 protein–RNA pairs in 40.4 ms