Protein–RNA interactions for Protein: O00560

SDCBP, Syntenin-1, humanhuman

Predicted RBP Predictions only

Length 298 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBPO00560 CD34-203ENST00000367036 2538 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
SDCBPO00560 LGALS2-201ENST00000215886 591 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
SDCBPO00560 AL365277.1-206ENST00000417869 487 ntTSL 3 BASIC11.74□□□□□ -0.53
SDCBPO00560 LINC01694-201ENST00000424569 821 ntTSL 5 BASIC11.74□□□□□ -0.53
SDCBPO00560 Z98749.2-201ENST00000428294 700 ntTSL 5 BASIC11.74□□□□□ -0.53
SDCBPO00560 AC078875.1-201ENST00000431907 724 ntBASIC11.74□□□□□ -0.53
SDCBPO00560 PTPA-218ENST00000435132 618 ntTSL 2 BASIC11.74□□□□□ -0.53
SDCBPO00560 AL365277.1-204ENST00000450157 599 ntTSL 3 BASIC11.74□□□□□ -0.53
SDCBPO00560 AC004471.1-201ENST00000456035 582 ntTSL 4 BASIC11.74□□□□□ -0.53
SDCBPO00560 AL365277.1-203ENST00000458207 693 ntTSL 3 BASIC11.74□□□□□ -0.53
SDCBPO00560 APOA2-204ENST00000464492 530 ntTSL 3 BASIC11.74□□□□□ -0.53
SDCBPO00560 CHIA-209ENST00000483391 1188 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
SDCBPO00560 AC005586.1-201ENST00000488310 577 ntTSL 4 BASIC11.74□□□□□ -0.53
SDCBPO00560 SNHG9-201ENST00000531523 275 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
SDCBPO00560 IL32-232ENST00000552356 623 ntAPPRIS ALT2 TSL 3 BASIC11.74□□□□□ -0.53
SDCBPO00560 NFIC-204ENST00000586919 1221 ntTSL 5 BASIC11.74□□□□□ -0.53
SDCBPO00560 TECR-207ENST00000596073 1170 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
SDCBPO00560 AC090164.2-201ENST00000611487 516 ntBASIC11.74□□□□□ -0.53
SDCBPO00560 AC005695.3-201ENST00000614522 232 ntBASIC11.74□□□□□ -0.53
SDCBPO00560 ATP13A2-203ENST00000452699 3981 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
SDCBPO00560 KCNAB2-212ENST00000458166 1336 ntTSL 2 BASIC11.74□□□□□ -0.53
SDCBPO00560 ERBB2-202ENST00000406381 4564 ntTSL 5 BASIC11.74□□□□□ -0.53
SDCBPO00560 CC2D1A-208ENST00000589606 3117 ntAPPRIS ALT1 TSL 1 (best) BASIC11.74□□□□□ -0.53
SDCBPO00560 RAB11FIP1-202ENST00000330843 7811 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
SDCBPO00560 VSTM4-202ENST00000332853 6392 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
SDCBPO00560 CHIA-204ENST00000369740 1625 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
SDCBPO00560 SLC38A6-201ENST00000267488 1688 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
SDCBPO00560 FAM76A-204ENST00000373954 3567 ntAPPRIS P2 TSL 1 (best) BASIC11.74□□□□□ -0.53
SDCBPO00560 TRPM2-201ENST00000300481 5627 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
SDCBPO00560 PGRMC1-201ENST00000217971 1911 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
SDCBPO00560 OS9-220ENST00000552285 2135 ntAPPRIS ALT2 TSL 1 (best) BASIC11.74□□□□□ -0.53
SDCBPO00560 C12orf43-202ENST00000445832 2397 ntAPPRIS ALT2 TSL 5 BASIC11.74□□□□□ -0.53
SDCBPO00560 SLC35F1-201ENST00000360388 4852 ntAPPRIS P2 TSL 1 (best) BASIC11.74□□□□□ -0.53
SDCBPO00560 OS9-201ENST00000257966 2505 ntAPPRIS ALT2 TSL 2 BASIC11.74□□□□□ -0.53
SDCBPO00560 EIF4G1-205ENST00000382330 5129 ntTSL 1 (best) BASIC11.74□□□□□ -0.53
SDCBPO00560 ALKBH1-201ENST00000216489 2594 ntAPPRIS P1 TSL 1 (best) BASIC11.74□□□□□ -0.53
SDCBPO00560 SEMA4D-212ENST00000450295 5684 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
SDCBPO00560 GRM7-201ENST00000357716 4127 ntAPPRIS P2 TSL 1 (best) BASIC11.73□□□□□ -0.53
SDCBPO00560 NUMA1-234ENST00000620566 7012 ntAPPRIS ALT2 TSL 5 BASIC11.73□□□□□ -0.53
SDCBPO00560 GUCY2D-201ENST00000254854 3698 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
SDCBPO00560 RPS3-201ENST00000278572 907 ntTSL 3 BASIC11.73□□□□□ -0.53
SDCBPO00560 POLR3K-201ENST00000293860 1392 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
SDCBPO00560 PAX4-201ENST00000338516 1085 ntAPPRIS ALT2 TSL 5 BASIC11.73□□□□□ -0.53
SDCBPO00560 GPM6B-202ENST00000355135 1673 ntAPPRIS ALT1 TSL 1 (best) BASIC11.73□□□□□ -0.53
SDCBPO00560 JTB-202ENST00000356648 1040 ntTSL 2 BASIC11.73□□□□□ -0.53
SDCBPO00560 C1orf53-201ENST00000367393 588 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
SDCBPO00560 PRUNE1-205ENST00000368937 1850 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
SDCBPO00560 ZNF185-205ENST00000370270 2166 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
SDCBPO00560 DDX43-201ENST00000370336 2513 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
SDCBPO00560 PHF13-201ENST00000377648 3681 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
SDCBPO00560 LYRM9-202ENST00000379103 1685 ntAPPRIS P1 TSL 3 BASIC11.73□□□□□ -0.53
SDCBPO00560 SMS-201ENST00000379404 1174 ntTSL 3 BASIC11.73□□□□□ -0.53
SDCBPO00560 PAK1IP1-201ENST00000379568 1800 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
SDCBPO00560 NIT1-204ENST00000392190 1518 ntAPPRIS ALT1 TSL 3 BASIC11.73□□□□□ -0.53
SDCBPO00560 SNRPN-203ENST00000400097 1605 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
SDCBPO00560 AL391119.1-201ENST00000416563 271 ntTSL 5 BASIC11.73□□□□□ -0.53
SDCBPO00560 Z82188.2-201ENST00000419128 630 ntTSL 5 BASIC11.73□□□□□ -0.53
SDCBPO00560 SVOPL-203ENST00000421622 1653 ntTSL 5 BASIC11.73□□□□□ -0.53
SDCBPO00560 AC244197.3-201ENST00000422081 2635 ntAPPRIS P1 TSL 2 BASIC11.73□□□□□ -0.53
SDCBPO00560 AL139158.2-202ENST00000428151 573 ntTSL 3 BASIC11.73□□□□□ -0.53
SDCBPO00560 APOBR-201ENST00000431282 3765 ntAPPRIS ALT2 TSL 5 BASIC11.73□□□□□ -0.53
SDCBPO00560 AC114488.1-201ENST00000435872 591 ntTSL 3 BASIC11.73□□□□□ -0.53
SDCBPO00560 LINC00680-205ENST00000450081 1593 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
SDCBPO00560 AL591846.1-201ENST00000451736 433 ntBASIC11.73□□□□□ -0.53
SDCBPO00560 GOLGA2P8-201ENST00000505201 779 ntBASIC11.73□□□□□ -0.53
SDCBPO00560 AC005740.2-201ENST00000511085 419 ntBASIC11.73□□□□□ -0.53
SDCBPO00560 AC011365.2-201ENST00000520041 810 ntTSL 5 BASIC11.73□□□□□ -0.53
SDCBPO00560 FAM8A2P-201ENST00000528813 1142 ntBASIC11.73□□□□□ -0.53
SDCBPO00560 ACP2-212ENST00000533929 1366 ntTSL 2 BASIC11.73□□□□□ -0.53
SDCBPO00560 MSH6-210ENST00000540021 3930 ntTSL 2 BASIC11.73□□□□□ -0.53
SDCBPO00560 CEP83-208ENST00000547575 3122 ntTSL 2 BASIC11.73□□□□□ -0.53
SDCBPO00560 AL583810.1-201ENST00000553344 1045 ntBASIC11.73□□□□□ -0.53
SDCBPO00560 TUBB8P7-202ENST00000564451 2115 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
SDCBPO00560 DERL2-202ENST00000570848 657 ntTSL 5 BASIC11.73□□□□□ -0.53
SDCBPO00560 MCRIP1-212ENST00000576730 2979 ntAPPRIS P1 TSL 2 BASIC11.73□□□□□ -0.53
SDCBPO00560 SKA2-205ENST00000580541 689 ntTSL 3 BASIC11.73□□□□□ -0.53
SDCBPO00560 CEP95-212ENST00000581056 903 ntAPPRIS ALT2 TSL 2 BASIC11.73□□□□□ -0.53
SDCBPO00560 AC099811.3-201ENST00000586351 425 ntTSL 3 BASIC11.73□□□□□ -0.53
SDCBPO00560 TUBB4A-212ENST00000601152 590 ntTSL 4 BASIC11.73□□□□□ -0.53
SDCBPO00560 AC091271.1-201ENST00000611877 1162 ntBASIC11.73□□□□□ -0.53
SDCBPO00560 PRKN-211ENST00000615065 261 ntTSL 5 BASIC11.73□□□□□ -0.53
SDCBPO00560 AC093462.1-201ENST00000621167 1683 ntBASIC11.73□□□□□ -0.53
SDCBPO00560 ANKRD36B-201ENST00000258459 5986 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
SDCBPO00560 ARHGAP21-217ENST00000612832 5514 ntTSL 5 BASIC11.73□□□□□ -0.53
SDCBPO00560 CEP85L-203ENST00000368491 7673 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
SDCBPO00560 KCNH1-205ENST00000638498 3479 ntTSL 5 BASIC11.73□□□□□ -0.53
SDCBPO00560 DYSF-206ENST00000409744 6564 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
SDCBPO00560 DYSF-209ENST00000410041 6594 ntAPPRIS ALT2 TSL 1 (best) BASIC11.73□□□□□ -0.53
SDCBPO00560 GRM2-202ENST00000395052 3151 ntAPPRIS P1 TSL 2 BASIC11.73□□□□□ -0.53
SDCBPO00560 PACSIN2-202ENST00000337959 3149 ntTSL 5 BASIC11.73□□□□□ -0.53
SDCBPO00560 SLC26A8-202ENST00000394602 3144 ntTSL 1 (best) BASIC11.73□□□□□ -0.53
SDCBPO00560 TRPM2-203ENST00000397928 6221 ntAPPRIS P3 TSL 1 (best) BASIC11.73□□□□□ -0.53
SDCBPO00560 FAM214B-208ENST00000605244 3016 ntAPPRIS P1 TSL 5 BASIC11.73□□□□□ -0.53
SDCBPO00560 PIGS-202ENST00000308360 2877 ntAPPRIS P1 TSL 1 (best) BASIC11.73□□□□□ -0.53
SDCBPO00560 IKZF1-211ENST00000440768 5511 ntTSL 5 BASIC11.73□□□□□ -0.53
SDCBPO00560 TMEM78-201ENST00000323223 2175 ntAPPRIS P1 BASIC11.72□□□□□ -0.53
SDCBPO00560 TTC39A-202ENST00000262676 6287 ntTSL 2 BASIC11.72□□□□□ -0.53
SDCBPO00560 AC009501.1-201ENST00000429952 2069 ntTSL 1 (best) BASIC11.72□□□□□ -0.53
SDCBPO00560 UQCRB-201ENST00000287022 5575 ntAPPRIS P1 TSL 1 (best) BASIC11.72□□□□□ -0.53
SDCBPO00560 AC015712.2-201ENST00000560351 3688 ntTSL 2 BASIC11.72□□□□□ -0.53
Retrieved 100 of 98,524 protein–RNA pairs in 44.2 ms