Protein–RNA interactions for Protein: P25942

CD40, Tumor necrosis factor receptor superfamily member 5, humanhuman

Predictions only

Length 277 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CD40P25942 LINC02228-201ENST00000507600 534 ntTSL 2 BASIC11.82□□□□□ -0.52
CD40P25942 AC003982.2-201ENST00000536933 365 ntTSL 3 BASIC11.82□□□□□ -0.52
CD40P25942 AL359219.1-201ENST00000556311 934 ntBASIC11.82□□□□□ -0.52
CD40P25942 JPT2-214ENST00000569765 782 ntTSL 2 BASIC11.82□□□□□ -0.52
CD40P25942 SCGB1B2P-201ENST00000595013 612 ntTSL 2 BASIC11.82□□□□□ -0.52
CD40P25942 AC073578.2-201ENST00000618927 464 ntTSL 4 BASIC11.82□□□□□ -0.52
CD40P25942 FO393412.1-201ENST00000619841 382 ntBASIC11.82□□□□□ -0.52
CD40P25942 PDE4DIP-227ENST00000529945 8824 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
CD40P25942 CCNG2-202ENST00000395640 1410 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CD40P25942 SYNGAP1-208ENST00000629380 9862 ntAPPRIS P1 TSL 2 BASIC11.82□□□□□ -0.52
CD40P25942 C11orf87-201ENST00000327419 5884 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CD40P25942 SLC13A5-202ENST00000381074 1738 ntTSL 2 BASIC11.82□□□□□ -0.52
CD40P25942 SERPINA13P-201ENST00000469935 1718 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
CD40P25942 CETP-203ENST00000566128 1733 ntTSL 5 BASIC11.82□□□□□ -0.52
CD40P25942 LGR5-201ENST00000266674 4611 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CD40P25942 DRC3-203ENST00000399187 2008 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CD40P25942 MAP2K3-214ENST00000613338 2029 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
CD40P25942 TROVE2-208ENST00000432079 7848 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
CD40P25942 GSDMA-201ENST00000301659 2164 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CD40P25942 AC023794.5-201ENST00000564380 2157 ntBASIC11.82□□□□□ -0.52
CD40P25942 MST1-202ENST00000449682 2621 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CD40P25942 CHRND-206ENST00000543200 2918 ntTSL 2 BASIC11.82□□□□□ -0.52
CD40P25942 SPIDR-201ENST00000297423 3988 ntAPPRIS P3 TSL 1 (best) BASIC11.82□□□□□ -0.52
CD40P25942 PARP1-203ENST00000366794 3958 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CD40P25942 CACNA1G-220ENST00000507896 6600 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
CD40P25942 PSME4-202ENST00000404125 7099 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CD40P25942 CREB3L4-202ENST00000368600 1496 ntAPPRIS ALT2 TSL 1 (best) BASIC11.82□□□□□ -0.52
CD40P25942 BAG2-201ENST00000370693 6651 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CD40P25942 MED15-203ENST00000382974 2235 ntTSL 1 (best) BASIC11.82□□□□□ -0.52
CD40P25942 TBC1D17-209ENST00000622860 2370 ntTSL 5 BASIC11.82□□□□□ -0.52
CD40P25942 FAM219B-201ENST00000357635 3550 ntAPPRIS P1 TSL 1 (best) BASIC11.82□□□□□ -0.52
CD40P25942 STX16-207ENST00000371141 4937 ntAPPRIS P3 TSL 2 BASIC11.82□□□□□ -0.52
CD40P25942 ICE1-201ENST00000296564 7927 ntAPPRIS P2 TSL 1 (best) BASIC11.82□□□□□ -0.52
CD40P25942 ARHGAP31-201ENST00000264245 9317 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
CD40P25942 SERP1-201ENST00000239944 3171 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
CD40P25942 PLA2G4B-202ENST00000458483 2734 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
CD40P25942 KRT4-204ENST00000551956 2576 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
CD40P25942 SIGLECL1-208ENST00000614422 1516 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
CD40P25942 AL109809.1-201ENST00000418979 1367 ntBASIC11.81□□□□□ -0.52
CD40P25942 ZSCAN32-215ENST00000618425 2788 ntTSL 2 BASIC11.81□□□□□ -0.52
CD40P25942 AFF1-201ENST00000307808 9390 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
CD40P25942 ATXN10-202ENST00000381061 3135 ntTSL 2 BASIC11.81□□□□□ -0.52
CD40P25942 EPHB3-201ENST00000330394 4236 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
CD40P25942 KIAA1191-201ENST00000298569 2991 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
CD40P25942 GRK6P1-201ENST00000400595 1711 ntBASIC11.81□□□□□ -0.52
CD40P25942 PSMC3IP-201ENST00000253789 1408 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
CD40P25942 ALG11-203ENST00000523764 1404 ntTSL 2 BASIC11.81□□□□□ -0.52
CD40P25942 TMEM182-201ENST00000409173 3198 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
CD40P25942 HCFC2-201ENST00000229330 5734 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
CD40P25942 S100A3-202ENST00000368713 856 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
CD40P25942 RGR-203ENST00000372092 868 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
CD40P25942 WFDC5-202ENST00000372789 1018 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
CD40P25942 IGHV5-51-201ENST00000390626 410 ntAPPRIS P1 BASIC11.81□□□□□ -0.52
CD40P25942 RBM14-204ENST00000409738 372 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
CD40P25942 RPL15-205ENST00000415719 830 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
CD40P25942 KRT18P46-201ENST00000435568 1279 ntBASIC11.81□□□□□ -0.52
CD40P25942 FAM138B-202ENST00000446648 1130 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
CD40P25942 FAM138C-202ENST00000449442 1126 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
CD40P25942 AC005009.2-201ENST00000452471 687 ntTSL 3 BASIC11.81□□□□□ -0.52
CD40P25942 LRRC75A-AS1-214ENST00000487066 763 ntTSL 3 BASIC11.81□□□□□ -0.52
CD40P25942 TBC1D3P6-201ENST00000505954 962 ntBASIC11.81□□□□□ -0.52
CD40P25942 C9orf135-205ENST00000527647 748 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
CD40P25942 DNAJB13-203ENST00000537753 912 ntTSL 3 BASIC11.81□□□□□ -0.52
CD40P25942 AC012379.2-201ENST00000560237 765 ntTSL 2 BASIC11.81□□□□□ -0.52
CD40P25942 SCAMP5-216ENST00000568081 710 ntTSL 2 BASIC11.81□□□□□ -0.52
CD40P25942 INCA1-203ENST00000575780 1221 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
CD40P25942 AC055811.3-201ENST00000584952 686 ntBASIC11.81□□□□□ -0.52
CD40P25942 RPL18A-203ENST00000599870 1084 ntTSL 2 BASIC11.81□□□□□ -0.52
CD40P25942 AC011247.3-201ENST00000603297 438 ntBASIC11.81□□□□□ -0.52
CD40P25942 RNF103-CHMP3-202ENST00000604011 1135 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
CD40P25942 AC090004.1-201ENST00000608606 653 ntAPPRIS P1 TSL 5 BASIC11.81□□□□□ -0.52
CD40P25942 Metazoa_SRP.83-201ENST00000611762 320 ntBASIC11.81□□□□□ -0.52
CD40P25942 Metazoa_SRP.141-201ENST00000615072 282 ntBASIC11.81□□□□□ -0.52
CD40P25942 Metazoa_SRP.37-201ENST00000617743 320 ntBASIC11.81□□□□□ -0.52
CD40P25942 FAM138F-201ENST00000631376 1183 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
CD40P25942 CSNK1G3-201ENST00000345990 4635 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
CD40P25942 WASHC2C-210ENST00000623400 4616 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
CD40P25942 DANT2-201ENST00000430756 2079 ntTSL 3 BASIC11.81□□□□□ -0.52
CD40P25942 LINC01010-201ENST00000431422 2069 ntTSL 2 BASIC11.81□□□□□ -0.52
CD40P25942 AL513497.1-201ENST00000624273 2083 ntBASIC11.81□□□□□ -0.52
CD40P25942 KDELR2-201ENST00000258739 2884 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
CD40P25942 TRMT1-217ENST00000592062 2579 ntAPPRIS P3 TSL 5 BASIC11.81□□□□□ -0.52
CD40P25942 AC002407.1-201ENST00000636668 3863 ntTSL 5 BASIC11.81□□□□□ -0.52
CD40P25942 CCDC178-201ENST00000300227 3087 ntAPPRIS P3 TSL 2 BASIC11.81□□□□□ -0.52
CD40P25942 FAM120C-201ENST00000328235 3716 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
CD40P25942 CR383656.2-201ENST00000548656 2254 ntBASIC11.81□□□□□ -0.52
CD40P25942 LINC00511-213ENST00000581549 2265 ntTSL 2 BASIC11.81□□□□□ -0.52
CD40P25942 MTMR3-204ENST00000401950 6018 ntAPPRIS P3 TSL 1 (best) BASIC11.81□□□□□ -0.52
CD40P25942 USP19-208ENST00000453664 4719 ntAPPRIS ALT2 TSL 2 BASIC11.81□□□□□ -0.52
CD40P25942 ZNF785-201ENST00000395216 3282 ntAPPRIS P2 TSL 1 (best) BASIC11.81□□□□□ -0.52
CD40P25942 HES2-201ENST00000377834 4262 ntAPPRIS P1 TSL 1 (best) BASIC11.81□□□□□ -0.52
CD40P25942 SMTN-202ENST00000347557 3130 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
CD40P25942 ABCF3-201ENST00000292808 2453 ntAPPRIS ALT1 TSL 2 BASIC11.81□□□□□ -0.52
CD40P25942 VAPB-202ENST00000395802 1834 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
CD40P25942 ARHGEF10-207ENST00000520359 5472 ntAPPRIS ALT2 TSL 1 (best) BASIC11.81□□□□□ -0.52
CD40P25942 CRACR2A-203ENST00000440314 2697 ntAPPRIS P1 TSL 2 BASIC11.81□□□□□ -0.52
CD40P25942 SETMAR-205ENST00000425863 1657 ntTSL 2 BASIC11.81□□□□□ -0.52
CD40P25942 MGRN1-211ENST00000588994 1665 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
CD40P25942 DDC-212ENST00000615193 1674 ntTSL 3 BASIC11.81□□□□□ -0.52
CD40P25942 DIS3L2-205ENST00000409401 2048 ntTSL 1 (best) BASIC11.81□□□□□ -0.52
Retrieved 100 of 98,524 protein–RNA pairs in 35.7 ms