Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 AWAT1-201ENST00000374521 1365 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC28BQ9BUN5 FAM90A7P-201ENST00000382628 1395 ntBASIC13.41□□□□□ -0.26
CCDC28BQ9BUN5 FAM90A23P-201ENST00000400136 1395 ntBASIC13.41□□□□□ -0.26
CCDC28BQ9BUN5 RPL18A-205ENST00000600147 1391 ntTSL 5 BASIC13.41□□□□□ -0.26
CCDC28BQ9BUN5 EHMT2-203ENST00000375537 3965 ntAPPRIS P4 TSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC28BQ9BUN5 AC091181.1-201ENST00000623762 2098 ntBASIC13.41□□□□□ -0.26
CCDC28BQ9BUN5 PDXK-210ENST00000468090 7297 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC28BQ9BUN5 RCC2P5-201ENST00000492126 1487 ntBASIC13.41□□□□□ -0.26
CCDC28BQ9BUN5 LINC01029-204ENST00000583106 1465 ntTSL 5 BASIC13.41□□□□□ -0.26
CCDC28BQ9BUN5 SLC26A8-202ENST00000394602 3144 ntTSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC28BQ9BUN5 AAAS-201ENST00000209873 1840 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC28BQ9BUN5 DCAF11-204ENST00000446197 4299 ntAPPRIS P1 TSL 1 (best) BASIC13.41□□□□□ -0.26
CCDC28BQ9BUN5 COBLL1-225ENST00000629362 3868 ntAPPRIS ALT2 TSL 2 BASIC13.4□□□□□ -0.26
CCDC28BQ9BUN5 ZFYVE19-215ENST00000570108 1669 ntAPPRIS ALT2 TSL 5 BASIC13.4□□□□□ -0.26
CCDC28BQ9BUN5 KCNJ11-201ENST00000339994 2801 ntAPPRIS P1 BASIC13.4□□□□□ -0.26
CCDC28BQ9BUN5 ORMDL2-201ENST00000243045 2141 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CCDC28BQ9BUN5 EFHC1-227ENST00000637089 2133 ntTSL 5 BASIC13.4□□□□□ -0.26
CCDC28BQ9BUN5 PLOD2-209ENST00000494950 2908 ntTSL 2 BASIC13.4□□□□□ -0.26
CCDC28BQ9BUN5 SLC24A4-204ENST00000531433 4531 ntAPPRIS ALT2 TSL 2 BASIC13.4□□□□□ -0.26
CCDC28BQ9BUN5 AC139795.2-201ENST00000499900 1751 ntTSL 2 BASIC13.4□□□□□ -0.26
CCDC28BQ9BUN5 XRCC3-202ENST00000553264 3018 ntAPPRIS P1 TSL 2 BASIC13.4□□□□□ -0.26
CCDC28BQ9BUN5 AGPAT1-203ENST00000375107 2234 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CCDC28BQ9BUN5 CDPF1-203ENST00000404583 1439 ntAPPRIS ALT1 TSL 2 BASIC13.4□□□□□ -0.26
CCDC28BQ9BUN5 BCS1L-205ENST00000412366 1430 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CCDC28BQ9BUN5 SLC47A1-206ENST00000571335 1415 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
CCDC28BQ9BUN5 KIZ-208ENST00000616848 1875 ntAPPRIS ALT2 TSL 2 BASIC13.4□□□□□ -0.26
CCDC28BQ9BUN5 ILF3-219ENST00000590261 3219 ntAPPRIS P3 TSL 5 BASIC13.4□□□□□ -0.26
CCDC28BQ9BUN5 ERBB2-202ENST00000406381 4564 ntTSL 5 BASIC13.4□□□□□ -0.26
CCDC28BQ9BUN5 TMOD1-201ENST00000259365 3343 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CCDC28BQ9BUN5 MRPS16-202ENST00000372945 2634 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CCDC28BQ9BUN5 MT1H-201ENST00000332374 397 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CCDC28BQ9BUN5 LMO1-201ENST00000335790 1279 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
CCDC28BQ9BUN5 DUSP23-202ENST00000368108 694 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CCDC28BQ9BUN5 MAD2L2-206ENST00000376672 1002 ntTSL 3 BASIC13.4□□□□□ -0.26
CCDC28BQ9BUN5 UBE4B-203ENST00000377153 1273 ntTSL 3 BASIC13.4□□□□□ -0.26
CCDC28BQ9BUN5 GZMB-202ENST00000382540 816 ntTSL 5 BASIC13.4□□□□□ -0.26
CCDC28BQ9BUN5 TMEM14DP-201ENST00000422205 345 ntBASIC13.4□□□□□ -0.26
CCDC28BQ9BUN5 CSTF3-202ENST00000431742 715 ntTSL 2 BASIC13.4□□□□□ -0.26
CCDC28BQ9BUN5 FYCO1-203ENST00000438446 1072 ntTSL 5 BASIC13.4□□□□□ -0.26
CCDC28BQ9BUN5 VDAC1P1-201ENST00000439229 848 ntBASIC13.4□□□□□ -0.26
CCDC28BQ9BUN5 UPK1A-AS1-201ENST00000443196 795 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
CCDC28BQ9BUN5 IL2RG-204ENST00000456850 540 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
CCDC28BQ9BUN5 TUBB8P8-201ENST00000458717 1058 ntBASIC13.4□□□□□ -0.26
CCDC28BQ9BUN5 AL121845.2-201ENST00000467211 252 ntAPPRIS P1 TSL 3 BASIC13.4□□□□□ -0.26
CCDC28BQ9BUN5 CCDC25-209ENST00000522915 785 ntTSL 3 BASIC13.4□□□□□ -0.26
CCDC28BQ9BUN5 WDYHV1-206ENST00000523356 869 ntTSL 3 BASIC13.4□□□□□ -0.26
CCDC28BQ9BUN5 CLNS1A-210ENST00000528364 953 ntAPPRIS P1 TSL 3 BASIC13.4□□□□□ -0.26
CCDC28BQ9BUN5 LMO1-204ENST00000534484 770 ntAPPRIS ALT1 TSL 5 BASIC13.4□□□□□ -0.26
CCDC28BQ9BUN5 GNAL-204ENST00000535121 1285 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CCDC28BQ9BUN5 CRHR1-208ENST00000577353 1206 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
CCDC28BQ9BUN5 AC008805.1-201ENST00000590892 364 ntBASIC13.4□□□□□ -0.26
CCDC28BQ9BUN5 TP53-221ENST00000615910 1149 ntTSL 5 BASIC13.4□□□□□ -0.26
CCDC28BQ9BUN5 SLC4A11-207ENST00000539553 2832 ntAPPRIS ALT2 TSL 2 BASIC13.4□□□□□ -0.26
CCDC28BQ9BUN5 MZF1-AS1-202ENST00000600534 2567 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
CCDC28BQ9BUN5 GLB1L-203ENST00000409640 2042 ntTSL 2 BASIC13.4□□□□□ -0.26
CCDC28BQ9BUN5 RAB11FIP1-202ENST00000330843 7811 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
CCDC28BQ9BUN5 TWSG1-201ENST00000262120 3756 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CCDC28BQ9BUN5 EPB41L1-202ENST00000338074 6266 ntAPPRIS P3 TSL 1 (best) BASIC13.4□□□□□ -0.26
CCDC28BQ9BUN5 MSR1-201ENST00000262101 2132 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CCDC28BQ9BUN5 SCN2B-201ENST00000278947 5826 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.26
CCDC28BQ9BUN5 RMND5B-212ENST00000542098 1681 ntTSL 5 BASIC13.4□□□□□ -0.26
CCDC28BQ9BUN5 AC009549.1-201ENST00000603468 1686 ntBASIC13.4□□□□□ -0.26
CCDC28BQ9BUN5 RERE-212ENST00000476556 4598 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
CCDC28BQ9BUN5 EPN2-202ENST00000347697 4664 ntAPPRIS ALT1 TSL 5 BASIC13.4□□□□□ -0.26
CCDC28BQ9BUN5 RAB15-201ENST00000267512 3391 ntTSL 1 (best) BASIC13.4□□□□□ -0.26
CCDC28BQ9BUN5 PRKCH-201ENST00000332981 3582 ntAPPRIS P1 TSL 1 (best) BASIC13.4□□□□□ -0.27
CCDC28BQ9BUN5 DANT2-201ENST00000430756 2079 ntTSL 3 BASIC13.4□□□□□ -0.27
CCDC28BQ9BUN5 AC000068.1-201ENST00000431090 2097 ntTSL 2 BASIC13.4□□□□□ -0.27
CCDC28BQ9BUN5 ODF2-213ENST00000448249 2059 ntTSL 2 BASIC13.4□□□□□ -0.27
CCDC28BQ9BUN5 TEX264-205ENST00000416589 1313 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 SHROOM2P1-201ENST00000434773 2384 ntBASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 HERC2P10-201ENST00000570209 2393 ntBASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 NOA1-201ENST00000264230 3415 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 RBM15-205ENST00000618772 3431 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 TMEM9-204ENST00000367334 1529 ntAPPRIS P3 TSL 1 (best) BASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 BCAP29-201ENST00000005259 4572 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 AL645937.6-201ENST00000641122 3727 ntBASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 C12orf66-201ENST00000311915 2698 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 YY1AP1-205ENST00000355499 2663 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 SMTNL1-202ENST00000527972 1649 ntAPPRIS P2 TSL 5 BASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 PDE1B-203ENST00000538346 1711 ntTSL 2 BASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 EI24-214ENST00000620753 1718 ntAPPRIS P1 TSL 5 BASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 SUSD6-201ENST00000342745 5388 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 DBF4B-202ENST00000393547 1810 ntAPPRIS ALT2 TSL 1 (best) BASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 DHX38-201ENST00000268482 4608 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 ST3GAL5-204ENST00000393808 2236 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 EPHB1-201ENST00000398015 4672 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 NR3C1-204ENST00000394466 3245 ntAPPRIS ALT1 TSL 5 BASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 NME3-201ENST00000219302 1069 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 SEC61B-201ENST00000223641 545 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 SRP14-201ENST00000267884 1077 ntAPPRIS P1 TSL 1 (best) BASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 LINC00266-1-201ENST00000279067 928 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 RBAK-RBAKDN-201ENST00000396904 766 ntAPPRIS P2 TSL 4 BASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 RBAK-RBAKDN-202ENST00000407184 1001 ntAPPRIS ALT2 TSL 2 BASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 AL513303.2-201ENST00000413339 536 ntTSL 2 BASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 RHCE-206ENST00000413854 1198 ntTSL 1 (best) BASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 WDR53-203ENST00000429115 683 ntTSL 2 BASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 KRT43P-201ENST00000434019 910 ntBASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 RPL7P3-201ENST00000441388 714 ntBASIC13.39□□□□□ -0.27
CCDC28BQ9BUN5 C3orf35-206ENST00000452017 513 ntAPPRIS P5 TSL 5 BASIC13.39□□□□□ -0.27
Retrieved 100 of 98,524 protein–RNA pairs in 60.6 ms