Protein–RNA interactions for Protein: Q53GS9

USP39, U4/U6.U5 tri-snRNP-associated protein 2, humanhuman

Known RBP Predictions only

Length 565 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
USP39Q53GS9 CDK20-201ENST00000325303 2175 ntAPPRIS P1 TSL 1 (best) BASIC14.02□□□□□ -0.17
USP39Q53GS9 MARK2-206ENST00000425897 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC14.02□□□□□ -0.17
USP39Q53GS9 PHTF2-206ENST00000422959 3525 ntAPPRIS P4 TSL 5 BASIC14.02□□□□□ -0.17
USP39Q53GS9 TRIT1-214ENST00000537440 2026 ntTSL 5 BASIC14.02□□□□□ -0.17
USP39Q53GS9 LINC01662-201ENST00000342888 1859 ntTSL 2 BASIC14.01□□□□□ -0.17
USP39Q53GS9 TRIM23-202ENST00000274327 1829 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
USP39Q53GS9 SEMA4D-204ENST00000420101 1837 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
USP39Q53GS9 DISC1-221ENST00000620189 6689 ntAPPRIS ALT2 TSL 5 BASIC14.01□□□□□ -0.17
USP39Q53GS9 MGRN1-203ENST00000415496 6405 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
USP39Q53GS9 DTD2-201ENST00000310850 2717 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
USP39Q53GS9 CACNA1A-211ENST00000592864 1623 ntTSL 3 BASIC14.01□□□□□ -0.17
USP39Q53GS9 PUF60-209ENST00000527197 1559 ntTSL 5 BASIC14.01□□□□□ -0.17
USP39Q53GS9 TRIM41-201ENST00000315073 3637 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
USP39Q53GS9 FAAP100-201ENST00000327787 3627 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
USP39Q53GS9 ZFP64-203ENST00000361387 2545 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
USP39Q53GS9 PELP1-212ENST00000574876 3465 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
USP39Q53GS9 BRWD1-201ENST00000333229 10141 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
USP39Q53GS9 HACD2-201ENST00000383657 4257 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
USP39Q53GS9 PHYHIP-202ENST00000454243 3200 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
USP39Q53GS9 SHANK2-202ENST00000357171 1373 ntTSL 5 BASIC14.01□□□□□ -0.17
USP39Q53GS9 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
USP39Q53GS9 CRACR2A-201ENST00000252322 2186 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
USP39Q53GS9 PGLYRP3-201ENST00000290722 1173 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
USP39Q53GS9 ZNF614-202ENST00000356322 1293 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
USP39Q53GS9 HIST1H2BF-201ENST00000356530 1196 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
USP39Q53GS9 NSMCE1-201ENST00000361439 1067 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
USP39Q53GS9 PIFO-201ENST00000369737 746 ntTSL 2 BASIC14.01□□□□□ -0.17
USP39Q53GS9 TRAPPC3-201ENST00000373159 590 ntTSL 3 BASIC14.01□□□□□ -0.17
USP39Q53GS9 AL357373.1-201ENST00000394974 322 ntBASIC14.01□□□□□ -0.17
USP39Q53GS9 SEPT7-AS1-201ENST00000412856 587 ntTSL 4 BASIC14.01□□□□□ -0.17
USP39Q53GS9 IQCF4-202ENST00000422896 745 ntTSL 2 BASIC14.01□□□□□ -0.17
USP39Q53GS9 LINC01523-201ENST00000425385 450 ntTSL 2 BASIC14.01□□□□□ -0.17
USP39Q53GS9 GH2-203ENST00000449787 753 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
USP39Q53GS9 CALCA-205ENST00000486207 851 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
USP39Q53GS9 AL121796.1-201ENST00000505702 466 ntTSL 3 BASIC14.01□□□□□ -0.17
USP39Q53GS9 AC109479.3-201ENST00000520163 360 ntTSL 3 BASIC14.01□□□□□ -0.17
USP39Q53GS9 FAM167A-AS1-202ENST00000533578 1222 ntTSL 2 BASIC14.01□□□□□ -0.17
USP39Q53GS9 KNOP1P1-201ENST00000542108 989 ntBASIC14.01□□□□□ -0.17
USP39Q53GS9 MIR5001-201ENST00000580185 100 ntBASIC14.01□□□□□ -0.17
USP39Q53GS9 MBP-238ENST00000580402 915 ntTSL 5 BASIC14.01□□□□□ -0.17
USP39Q53GS9 SMAD7-208ENST00000591805 1152 ntTSL 2 BASIC14.01□□□□□ -0.17
USP39Q53GS9 EPB41L1-202ENST00000338074 6266 ntAPPRIS P3 TSL 1 (best) BASIC14.01□□□□□ -0.17
USP39Q53GS9 SCUBE2-201ENST00000309263 3727 ntTSL 5 BASIC14.01□□□□□ -0.17
USP39Q53GS9 CPSF7-201ENST00000340437 3695 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
USP39Q53GS9 GPR84-202ENST00000551809 2041 ntAPPRIS P1 BASIC14.01□□□□□ -0.17
USP39Q53GS9 GUCY1B2-205ENST00000532104 1912 ntTSL 2 BASIC14.01□□□□□ -0.17
USP39Q53GS9 ARHGAP45-202ENST00000539243 4184 ntAPPRIS ALT2 TSL 2 BASIC14.01□□□□□ -0.17
USP39Q53GS9 GOLGA8K-202ENST00000512626 1894 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
USP39Q53GS9 GOLGA8T-202ENST00000569052 1896 ntAPPRIS P1 TSL 5 BASIC14.01□□□□□ -0.17
USP39Q53GS9 LSS-211ENST00000522411 2523 ntTSL 2 BASIC14.01□□□□□ -0.17
USP39Q53GS9 ACVR1C-204ENST00000409680 1786 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
USP39Q53GS9 POLRMT-202ENST00000588649 3835 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
USP39Q53GS9 AC009133.1-201ENST00000569981 2449 ntTSL 2 BASIC14.01□□□□□ -0.17
USP39Q53GS9 AMMECR1-203ENST00000372059 3052 ntTSL 1 (best) BASIC14.01□□□□□ -0.17
USP39Q53GS9 BABAM2-204ENST00000379624 1657 ntAPPRIS P1 TSL 1 (best) BASIC14.01□□□□□ -0.17
USP39Q53GS9 SERF1B-204ENST00000506542 1666 ntTSL 3 BASIC14.01□□□□□ -0.17
USP39Q53GS9 ST3GAL5-203ENST00000393805 2344 ntAPPRIS ALT2 TSL 1 (best) BASIC14.01□□□□□ -0.17
USP39Q53GS9 PPP2R5E-201ENST00000337537 6659 ntAPPRIS P3 TSL 1 (best) BASIC14□□□□□ -0.17
USP39Q53GS9 MARVELD2-203ENST00000436532 1563 ntTSL 5 BASIC14□□□□□ -0.17
USP39Q53GS9 COQ4-201ENST00000300452 1548 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
USP39Q53GS9 IL18BP-205ENST00000393705 1549 ntAPPRIS P2 TSL 1 (best) BASIC14□□□□□ -0.17
USP39Q53GS9 TP73-205ENST00000378285 2117 ntTSL 1 (best) BASIC14□□□□□ -0.17
USP39Q53GS9 WWTR1-203ENST00000465804 5030 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
USP39Q53GS9 TARBP2-202ENST00000394357 1402 ntTSL 3 BASIC14□□□□□ -0.17
USP39Q53GS9 RMDN3-201ENST00000260385 3138 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
USP39Q53GS9 IKZF1-202ENST00000343574 5925 ntTSL 5 BASIC14□□□□□ -0.17
USP39Q53GS9 PLPPR1-201ENST00000374874 2495 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
USP39Q53GS9 FGR-204ENST00000399173 2483 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
USP39Q53GS9 HSD17B4-222ENST00000515320 2494 ntTSL 2 BASIC14□□□□□ -0.17
USP39Q53GS9 IMPDH1-204ENST00000419067 2431 ntTSL 3 BASIC14□□□□□ -0.17
USP39Q53GS9 MCC-202ENST00000408903 3476 ntAPPRIS P1 TSL 2 BASIC14□□□□□ -0.17
USP39Q53GS9 LBH-201ENST00000395323 2933 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
USP39Q53GS9 SHMT1P1-201ENST00000419974 1312 ntBASIC14□□□□□ -0.17
USP39Q53GS9 TUBB8P4-201ENST00000511806 1324 ntBASIC14□□□□□ -0.17
USP39Q53GS9 MYD88-203ENST00000417037 2871 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
USP39Q53GS9 HMGA1-203ENST00000374116 1848 ntAPPRIS ALT1 TSL 1 (best) BASIC14□□□□□ -0.17
USP39Q53GS9 TMUB2-211ENST00000589184 1837 ntTSL 5 BASIC14□□□□□ -0.17
USP39Q53GS9 UPK1A-201ENST00000222275 1223 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
USP39Q53GS9 LST1-204ENST00000376086 554 ntTSL 1 (best) BASIC14□□□□□ -0.17
USP39Q53GS9 UPK1A-202ENST00000379013 1016 ntTSL 1 (best) BASIC14□□□□□ -0.17
USP39Q53GS9 ACTBP14-201ENST00000411655 1089 ntBASIC14□□□□□ -0.17
USP39Q53GS9 CCDC12-202ENST00000425441 1097 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
USP39Q53GS9 EHMT2-AS1-201ENST00000434689 373 ntTSL 3 BASIC14□□□□□ -0.17
USP39Q53GS9 AL035413.1-201ENST00000437898 507 ntTSL 2 BASIC14□□□□□ -0.17
USP39Q53GS9 COQ10BP2-201ENST00000513804 724 ntBASIC14□□□□□ -0.17
USP39Q53GS9 LINC00301-203ENST00000527161 749 ntTSL 2 BASIC14□□□□□ -0.17
USP39Q53GS9 ORAOV1-205ENST00000535657 709 ntAPPRIS P2 TSL 3 BASIC14□□□□□ -0.17
USP39Q53GS9 F11R-204ENST00000537746 1245 ntTSL 2 BASIC14□□□□□ -0.17
USP39Q53GS9 HNRNPA1P5-201ENST00000558213 966 ntBASIC14□□□□□ -0.17
USP39Q53GS9 PPCDC-206ENST00000564923 757 ntTSL 5 BASIC14□□□□□ -0.17
USP39Q53GS9 AC009065.6-201ENST00000568795 456 ntTSL 2 BASIC14□□□□□ -0.17
USP39Q53GS9 LINC01543-201ENST00000578367 900 ntTSL 5 BASIC14□□□□□ -0.17
USP39Q53GS9 HKR1-220ENST00000591259 734 ntTSL 1 (best) BASIC14□□□□□ -0.17
USP39Q53GS9 RPL18A-203ENST00000599870 1084 ntTSL 2 BASIC14□□□□□ -0.17
USP39Q53GS9 CCL3L3-203ENST00000619989 784 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
USP39Q53GS9 OSMR-AS1-204ENST00000636516 850 ntTSL 5 BASIC14□□□□□ -0.17
USP39Q53GS9 MAGEA4-202ENST00000360243 1773 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
USP39Q53GS9 MAGEA4-203ENST00000370335 1773 ntAPPRIS P1 TSL 1 (best) BASIC14□□□□□ -0.17
USP39Q53GS9 MAGEA4-204ENST00000370340 1773 ntAPPRIS P1 TSL 5 BASIC14□□□□□ -0.17
USP39Q53GS9 GRM1-204ENST00000492807 6836 ntAPPRIS ALT2 TSL 1 (best) BASIC14□□□□□ -0.17
Retrieved 100 of 98,524 protein–RNA pairs in 44.4 ms