Protein–RNA interactions for Protein: Q9Y5H4

PCDHGA1, Protocadherin gamma-A1, humanhuman

Predictions only

Length 931 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHGA1Q9Y5H4 FP325331.1-202ENST00000623531 1380 ntBASIC21.57■■□□□ 1.04
PCDHGA1Q9Y5H4 MAPK8IP1P2-201ENST00000580257 1472 ntBASIC21.57■■□□□ 1.04
PCDHGA1Q9Y5H4 NUDT18-201ENST00000611621 1497 ntAPPRIS P1 TSL 1 (best) BASIC21.57■■□□□ 1.04
PCDHGA1Q9Y5H4 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC21.57■■□□□ 1.04
PCDHGA1Q9Y5H4 SHMT1-203ENST00000354098 1656 ntTSL 1 (best) BASIC21.56■■□□□ 1.04
PCDHGA1Q9Y5H4 AL121749.1-201ENST00000635993 1768 ntTSL 5 BASIC21.56■■□□□ 1.04
PCDHGA1Q9Y5H4 SCN1B-206ENST00000638536 1600 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PCDHGA1Q9Y5H4 C2orf82-201ENST00000331342 465 ntAPPRIS P2 TSL 1 (best) BASIC21.56■■□□□ 1.04
PCDHGA1Q9Y5H4 MTX2-201ENST00000249442 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PCDHGA1Q9Y5H4 GPR35-204ENST00000430267 1399 ntAPPRIS ALT2 TSL 5 BASIC21.56■■□□□ 1.04
PCDHGA1Q9Y5H4 SIMC1-204ENST00000430704 1925 ntAPPRIS P3 TSL 2 BASIC21.56■■□□□ 1.04
PCDHGA1Q9Y5H4 SLC35B2-202ENST00000393812 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.56■■□□□ 1.04
PCDHGA1Q9Y5H4 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.56■■□□□ 1.04
PCDHGA1Q9Y5H4 STYXL1-204ENST00000360591 1127 ntTSL 5 BASIC21.55■■□□□ 1.04
PCDHGA1Q9Y5H4 AC092675.2-201ENST00000413274 541 ntTSL 4 BASIC21.55■■□□□ 1.04
PCDHGA1Q9Y5H4 AC006015.1-201ENST00000429970 570 ntBASIC21.55■■□□□ 1.04
PCDHGA1Q9Y5H4 AC010525.1-201ENST00000585559 441 ntBASIC21.55■■□□□ 1.04
PCDHGA1Q9Y5H4 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC21.55■■□□□ 1.04
PCDHGA1Q9Y5H4 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC21.55■■□□□ 1.04
PCDHGA1Q9Y5H4 AC091060.1-201ENST00000623524 1766 ntBASIC21.55■■□□□ 1.04
PCDHGA1Q9Y5H4 ADORA2B-201ENST00000304222 1735 ntAPPRIS P1 TSL 1 (best) BASIC21.55■■□□□ 1.04
PCDHGA1Q9Y5H4 POLD2-218ENST00000610533 1619 ntTSL 1 (best) BASIC21.55■■□□□ 1.04
PCDHGA1Q9Y5H4 SOHLH1-201ENST00000298466 1987 ntAPPRIS P3 TSL 1 (best) BASIC21.54■■□□□ 1.04
PCDHGA1Q9Y5H4 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
PCDHGA1Q9Y5H4 COMT-206ENST00000407537 1457 ntAPPRIS P3 TSL 5 BASIC21.54■■□□□ 1.04
PCDHGA1Q9Y5H4 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC21.54■■□□□ 1.04
PCDHGA1Q9Y5H4 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC21.54■■□□□ 1.04
PCDHGA1Q9Y5H4 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC21.54■■□□□ 1.04
PCDHGA1Q9Y5H4 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC21.54■■□□□ 1.04
PCDHGA1Q9Y5H4 TK2-208ENST00000545043 1120 ntTSL 2 BASIC21.54■■□□□ 1.04
PCDHGA1Q9Y5H4 DUX4L4-201ENST00000566884 1269 ntBASIC21.54■■□□□ 1.04
PCDHGA1Q9Y5H4 AC080038.1-201ENST00000611274 1154 ntBASIC21.54■■□□□ 1.04
PCDHGA1Q9Y5H4 AC105233.4-201ENST00000642045 216 ntBASIC21.54■■□□□ 1.04
PCDHGA1Q9Y5H4 RFLNA-205ENST00000546355 2354 ntAPPRIS ALT1 TSL 1 (best) BASIC21.54■■□□□ 1.04
PCDHGA1Q9Y5H4 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
PCDHGA1Q9Y5H4 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC21.54■■□□□ 1.04
PCDHGA1Q9Y5H4 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC21.54■■□□□ 1.04
PCDHGA1Q9Y5H4 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
PCDHGA1Q9Y5H4 CSNK1E-203ENST00000396832 2791 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PCDHGA1Q9Y5H4 EIF3J-202ENST00000424492 1550 ntTSL 4 BASIC21.53■■□□□ 1.04
PCDHGA1Q9Y5H4 PACS2-201ENST00000325438 3708 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PCDHGA1Q9Y5H4 OXSR1-203ENST00000446845 1908 ntTSL 5 BASIC21.53■■□□□ 1.04
PCDHGA1Q9Y5H4 GAS2L1P2-201ENST00000436355 1356 ntBASIC21.53■■□□□ 1.04
PCDHGA1Q9Y5H4 UBTD1-201ENST00000370664 1706 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PCDHGA1Q9Y5H4 PHLDA3-201ENST00000367309 896 ntAPPRIS P1 TSL 5 BASIC21.53■■□□□ 1.04
PCDHGA1Q9Y5H4 AL590128.2-201ENST00000442889 415 ntTSL 3 BASIC21.53■■□□□ 1.04
PCDHGA1Q9Y5H4 C11orf24-209ENST00000533310 980 ntAPPRIS ALT2 TSL 5 BASIC21.53■■□□□ 1.04
PCDHGA1Q9Y5H4 PSIP1-202ENST00000380716 1889 ntTSL 5 BASIC21.53■■□□□ 1.04
PCDHGA1Q9Y5H4 TMEM41B-207ENST00000611268 1440 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PCDHGA1Q9Y5H4 HAS2-AS1-201ENST00000514180 1656 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
PCDHGA1Q9Y5H4 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC21.53■■□□□ 1.04
PCDHGA1Q9Y5H4 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC21.53■■□□□ 1.04
PCDHGA1Q9Y5H4 PPP1R26-201ENST00000356818 4932 ntAPPRIS P1 TSL 1 (best) BASIC21.53■■□□□ 1.04
PCDHGA1Q9Y5H4 SETD9-211ENST00000628593 1306 ntTSL 1 (best) BASIC21.53■■□□□ 1.04
PCDHGA1Q9Y5H4 TBR1-202ENST00000410035 1454 ntTSL 2 BASIC21.52■■□□□ 1.04
PCDHGA1Q9Y5H4 REXO4-202ENST00000371942 2360 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
PCDHGA1Q9Y5H4 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC21.52■■□□□ 1.04
PCDHGA1Q9Y5H4 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC21.52■■□□□ 1.04
PCDHGA1Q9Y5H4 MPV17L-202ENST00000396385 1037 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
PCDHGA1Q9Y5H4 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC21.52■■□□□ 1.04
PCDHGA1Q9Y5H4 SNHG7-204ENST00000447221 2157 ntTSL 2 BASIC21.52■■□□□ 1.04
PCDHGA1Q9Y5H4 DNAJB11-201ENST00000265028 1688 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
PCDHGA1Q9Y5H4 FNTA-201ENST00000302279 1840 ntAPPRIS P1 TSL 1 (best) BASIC21.52■■□□□ 1.04
PCDHGA1Q9Y5H4 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC21.52■■□□□ 1.04
PCDHGA1Q9Y5H4 TLE6-201ENST00000246112 2100 ntAPPRIS ALT2 TSL 1 (best) BASIC21.52■■□□□ 1.03
PCDHGA1Q9Y5H4 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PCDHGA1Q9Y5H4 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC21.51■■□□□ 1.03
PCDHGA1Q9Y5H4 AJAP1-201ENST00000378190 2383 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
PCDHGA1Q9Y5H4 TCTEX1D4-201ENST00000339355 763 ntAPPRIS P1 BASIC21.51■■□□□ 1.03
PCDHGA1Q9Y5H4 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
PCDHGA1Q9Y5H4 MFF-208ENST00000409616 1247 ntTSL 5 BASIC21.51■■□□□ 1.03
PCDHGA1Q9Y5H4 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
PCDHGA1Q9Y5H4 AC145207.2-202ENST00000576554 565 ntTSL 5 BASIC21.51■■□□□ 1.03
PCDHGA1Q9Y5H4 NDUFA6-AS1-207ENST00000595777 833 ntTSL 5 BASIC21.51■■□□□ 1.03
PCDHGA1Q9Y5H4 TMEM182-210ENST00000639249 1025 ntTSL 5 BASIC21.51■■□□□ 1.03
PCDHGA1Q9Y5H4 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PCDHGA1Q9Y5H4 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC21.51■■□□□ 1.03
PCDHGA1Q9Y5H4 PTOV1-201ENST00000391842 1875 ntAPPRIS P1 TSL 5 BASIC21.51■■□□□ 1.03
PCDHGA1Q9Y5H4 RCAN1-201ENST00000313806 2490 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
PCDHGA1Q9Y5H4 MRPL37-202ENST00000360840 1483 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PCDHGA1Q9Y5H4 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
PCDHGA1Q9Y5H4 IRF3-207ENST00000593922 1494 ntTSL 1 (best) BASIC21.51■■□□□ 1.03
PCDHGA1Q9Y5H4 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC21.51■■□□□ 1.03
PCDHGA1Q9Y5H4 KLF15-201ENST00000296233 2574 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PCDHGA1Q9Y5H4 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC21.5■■□□□ 1.03
PCDHGA1Q9Y5H4 TGFBRAP1-202ENST00000393359 5979 ntAPPRIS P1 TSL 1 (best) BASIC21.5■■□□□ 1.03
PCDHGA1Q9Y5H4 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC21.5■■□□□ 1.03
PCDHGA1Q9Y5H4 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC21.5■■□□□ 1.03
PCDHGA1Q9Y5H4 SPANXA2-OT1-201ENST00000622372 1686 ntTSL 2 BASIC21.5■■□□□ 1.03
PCDHGA1Q9Y5H4 SHF-207ENST00000560540 2062 ntTSL 5 BASIC21.49■■□□□ 1.03
PCDHGA1Q9Y5H4 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.49■■□□□ 1.03
PCDHGA1Q9Y5H4 CACNG7-203ENST00000391767 2688 ntAPPRIS P1 TSL 5 BASIC21.49■■□□□ 1.03
PCDHGA1Q9Y5H4 MRPS7-203ENST00000579002 1638 ntTSL 2 BASIC21.49■■□□□ 1.03
PCDHGA1Q9Y5H4 TNFRSF18-203ENST00000379268 1179 ntAPPRIS ALT2 TSL 1 (best) BASIC21.49■■□□□ 1.03
PCDHGA1Q9Y5H4 AC016769.1-201ENST00000409132 1010 ntBASIC21.49■■□□□ 1.03
PCDHGA1Q9Y5H4 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC21.49■■□□□ 1.03
PCDHGA1Q9Y5H4 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC21.49■■□□□ 1.03
PCDHGA1Q9Y5H4 SPIRE2-205ENST00000563972 1823 ntTSL 1 (best) BASIC21.49■■□□□ 1.03
PCDHGA1Q9Y5H4 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC21.49■■□□□ 1.03
PCDHGA1Q9Y5H4 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC21.48■■□□□ 1.03
Retrieved 100 of 98,524 protein–RNA pairs in 42.5 ms