Protein–RNA interactions for Protein: Q9NZR4

VSX1, Visual system homeobox 1, humanhuman

Predicted RBP Predictions only

Length 365 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VSX1Q9NZR4 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC19.88■□□□□ 0.77
VSX1Q9NZR4 ZC3H14-223ENST00000557607 1983 ntTSL 5 BASIC19.88■□□□□ 0.77
VSX1Q9NZR4 PARD3-213ENST00000545260 5740 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
VSX1Q9NZR4 SMARCD2-201ENST00000225742 1800 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VSX1Q9NZR4 CLDN5-203ENST00000413119 1760 ntTSL 2 BASIC19.88■□□□□ 0.77
VSX1Q9NZR4 ST3GAL4-202ENST00000356132 1745 ntTSL 5 BASIC19.88■□□□□ 0.77
VSX1Q9NZR4 TMEM230-205ENST00000379279 1636 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
VSX1Q9NZR4 PLPP1-202ENST00000307259 1597 ntAPPRIS ALT1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VSX1Q9NZR4 GNB1-210ENST00000615252 3048 ntTSL 5 BASIC19.88■□□□□ 0.77
VSX1Q9NZR4 LINC01116-201ENST00000295549 1407 ntTSL 2 BASIC19.88■□□□□ 0.77
VSX1Q9NZR4 HMX3-201ENST00000357878 1173 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
VSX1Q9NZR4 HMGA2-202ENST00000393577 611 ntTSL 3 BASIC19.88■□□□□ 0.77
VSX1Q9NZR4 MDK-203ENST00000395566 828 ntAPPRIS P2 TSL 1 (best) BASIC19.88■□□□□ 0.77
VSX1Q9NZR4 WBP1-203ENST00000409737 1110 ntAPPRIS ALT1 TSL 5 BASIC19.88■□□□□ 0.77
VSX1Q9NZR4 CHAC1-201ENST00000444189 1204 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VSX1Q9NZR4 RARRES2P1-201ENST00000474487 481 ntBASIC19.88■□□□□ 0.77
VSX1Q9NZR4 EN1-201ENST00000295206 2457 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
VSX1Q9NZR4 SLC30A2-201ENST00000374276 2494 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
VSX1Q9NZR4 KAT5-201ENST00000341318 2296 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VSX1Q9NZR4 SLC35C1-202ENST00000442528 1756 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
VSX1Q9NZR4 FNDC4-201ENST00000264703 1657 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VSX1Q9NZR4 SNUPN-207ENST00000567134 1641 ntAPPRIS P1 TSL 5 BASIC19.87■□□□□ 0.77
VSX1Q9NZR4 AC112229.4-201ENST00000488671 1528 ntTSL 2 BASIC19.87■□□□□ 0.77
VSX1Q9NZR4 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
VSX1Q9NZR4 OSCAR-203ENST00000356532 1355 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
VSX1Q9NZR4 OSCAR-204ENST00000358375 1389 ntAPPRIS ALT2 TSL 1 (best) BASIC19.87■□□□□ 0.77
VSX1Q9NZR4 MIR222HG-201ENST00000602461 1379 ntTSL 5 BASIC19.87■□□□□ 0.77
VSX1Q9NZR4 OSCAR-210ENST00000616447 1358 ntAPPRIS ALT2 TSL 5 BASIC19.87■□□□□ 0.77
VSX1Q9NZR4 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC19.87■□□□□ 0.77
VSX1Q9NZR4 ASPSCR1-208ENST00000580534 1776 ntTSL 2 BASIC19.87■□□□□ 0.77
VSX1Q9NZR4 AC012645.1-201ENST00000515455 1650 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
VSX1Q9NZR4 BLOC1S4-201ENST00000320776 1617 ntAPPRIS P1 BASIC19.87■□□□□ 0.77
VSX1Q9NZR4 GRAMD1A-201ENST00000317991 2695 ntAPPRIS P3 TSL 1 (best) BASIC19.87■□□□□ 0.77
VSX1Q9NZR4 MTNR1B-201ENST00000257068 1565 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
VSX1Q9NZR4 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC19.86■□□□□ 0.77
VSX1Q9NZR4 FAM107A-203ENST00000447756 1432 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
VSX1Q9NZR4 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC19.86■□□□□ 0.77
VSX1Q9NZR4 CORO1A-201ENST00000219150 1803 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VSX1Q9NZR4 KAT2B-201ENST00000263754 4833 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VSX1Q9NZR4 COG8-201ENST00000562081 1731 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
VSX1Q9NZR4 TPST2-203ENST00000403880 2084 ntAPPRIS P1 TSL 5 BASIC19.86■□□□□ 0.77
VSX1Q9NZR4 LTB4R-201ENST00000345363 1616 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
VSX1Q9NZR4 ESRRAP2-201ENST00000418437 1549 ntBASIC19.86■□□□□ 0.77
VSX1Q9NZR4 COMT-203ENST00000403184 2217 ntTSL 2 BASIC19.86■□□□□ 0.77
VSX1Q9NZR4 SOHLH1-202ENST00000425225 1411 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
VSX1Q9NZR4 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC19.85■□□□□ 0.77
VSX1Q9NZR4 MYBL1-201ENST00000517885 1714 ntTSL 5 BASIC19.85■□□□□ 0.77
VSX1Q9NZR4 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC19.85■□□□□ 0.77
VSX1Q9NZR4 JAGN1-201ENST00000307768 1693 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VSX1Q9NZR4 TGIF1-206ENST00000405385 1689 ntTSL 2 BASIC19.85■□□□□ 0.77
VSX1Q9NZR4 NAA30-203ENST00000555166 1294 ntAPPRIS ALT2 TSL 2 BASIC19.85■□□□□ 0.77
VSX1Q9NZR4 AC011448.1-201ENST00000555938 1100 ntAPPRIS P1 TSL 2 BASIC19.85■□□□□ 0.77
VSX1Q9NZR4 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VSX1Q9NZR4 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VSX1Q9NZR4 ASCC1-204ENST00000394915 1510 ntTSL 5 BASIC19.85■□□□□ 0.77
VSX1Q9NZR4 ITM2C-202ENST00000326427 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VSX1Q9NZR4 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC19.85■□□□□ 0.77
VSX1Q9NZR4 UBL7-202ENST00000395081 1427 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VSX1Q9NZR4 ASRGL1-202ENST00000415229 2270 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.77
VSX1Q9NZR4 UBE2S-201ENST00000264552 2548 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VSX1Q9NZR4 PRELID2-201ENST00000334744 2140 ntTSL 2 BASIC19.84■□□□□ 0.77
VSX1Q9NZR4 SCRT2-201ENST00000246104 3577 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VSX1Q9NZR4 CTAG1B-201ENST00000328435 748 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VSX1Q9NZR4 LRP11-202ENST00000367368 1042 ntTSL 2 BASIC19.84■□□□□ 0.77
VSX1Q9NZR4 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC19.84■□□□□ 0.77
VSX1Q9NZR4 CTAG1A-202ENST00000599837 748 ntAPPRIS P1 TSL 1 (best) BASIC19.84■□□□□ 0.77
VSX1Q9NZR4 MIR4787-201ENST00000607364 84 ntBASIC19.84■□□□□ 0.77
VSX1Q9NZR4 GDF6-202ENST00000620978 973 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
VSX1Q9NZR4 CCDC7-201ENST00000277657 1899 ntAPPRIS P2 TSL 1 (best) BASIC19.84■□□□□ 0.77
VSX1Q9NZR4 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC19.84■□□□□ 0.77
VSX1Q9NZR4 FP325331.1-202ENST00000623531 1380 ntBASIC19.83■□□□□ 0.77
VSX1Q9NZR4 HADH-209ENST00000603302 2032 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
VSX1Q9NZR4 TMEM259-201ENST00000333175 2581 ntAPPRIS P3 TSL 1 (best) BASIC19.83■□□□□ 0.77
VSX1Q9NZR4 TRIM7-202ENST00000334421 1228 ntTSL 1 (best) BASIC19.83■□□□□ 0.77
VSX1Q9NZR4 HAS1-202ENST00000540069 2110 ntAPPRIS ALT2 TSL 1 (best) BASIC19.83■□□□□ 0.77
VSX1Q9NZR4 LRRC61-205ENST00000493307 1456 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
VSX1Q9NZR4 NKX2-4-201ENST00000351817 2238 ntAPPRIS P1 TSL 5 BASIC19.83■□□□□ 0.76
VSX1Q9NZR4 HTRA2-201ENST00000258080 2370 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
VSX1Q9NZR4 PPP2R3B-202ENST00000390665 2151 ntAPPRIS P1 TSL 1 (best) BASIC19.83■□□□□ 0.76
VSX1Q9NZR4 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC19.83■□□□□ 0.76
VSX1Q9NZR4 SLC25A11-201ENST00000225665 1897 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VSX1Q9NZR4 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC19.82■□□□□ 0.76
VSX1Q9NZR4 SYCE1-204ENST00000432597 1254 ntAPPRIS ALT2 TSL 1 (best) BASIC19.82■□□□□ 0.76
VSX1Q9NZR4 AC138207.2-201ENST00000583377 492 ntTSL 2 BASIC19.82■□□□□ 0.76
VSX1Q9NZR4 MTDHP2-201ENST00000601468 714 ntBASIC19.82■□□□□ 0.76
VSX1Q9NZR4 ADARB1-205ENST00000437626 5032 ntTSL 1 (best) BASIC19.82■□□□□ 0.76
VSX1Q9NZR4 SH3YL1-201ENST00000356150 1763 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VSX1Q9NZR4 LINC01529-204ENST00000636474 1715 ntBASIC19.82■□□□□ 0.76
VSX1Q9NZR4 C20orf27-202ENST00000379772 1886 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VSX1Q9NZR4 CDR2-201ENST00000268383 2702 ntAPPRIS P1 TSL 1 (best) BASIC19.82■□□□□ 0.76
VSX1Q9NZR4 GUSBP5-202ENST00000510805 1989 ntBASIC19.81■□□□□ 0.76
VSX1Q9NZR4 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC19.81■□□□□ 0.76
VSX1Q9NZR4 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC19.81■□□□□ 0.76
VSX1Q9NZR4 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
VSX1Q9NZR4 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC19.81■□□□□ 0.76
VSX1Q9NZR4 EVA1B-201ENST00000270824 1054 ntAPPRIS P1 TSL 2 BASIC19.81■□□□□ 0.76
VSX1Q9NZR4 FEZ1-202ENST00000366139 1053 ntTSL 2 BASIC19.81■□□□□ 0.76
VSX1Q9NZR4 AC239859.2-201ENST00000444165 318 ntBASIC19.81■□□□□ 0.76
VSX1Q9NZR4 LYSMD2-202ENST00000454181 1228 ntTSL 1 (best) BASIC19.81■□□□□ 0.76
VSX1Q9NZR4 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC19.81■□□□□ 0.76
Retrieved 100 of 98,524 protein–RNA pairs in 14.9 ms