Protein–RNA interactions for Protein: Q9H611

PIF1, ATP-dependent DNA helicase PIF1, humanhuman

Predictions only

Length 641 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PIF1Q9H611 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PIF1Q9H611 PGF-206ENST00000555567 1927 ntAPPRIS P3 TSL 1 (best) BASIC21.21■□□□□ 0.99
PIF1Q9H611 AC127496.7-201ENST00000625110 1798 ntBASIC21.21■□□□□ 0.99
PIF1Q9H611 TSPY13P-201ENST00000338964 914 ntBASIC21.21■□□□□ 0.99
PIF1Q9H611 AC011551.1-201ENST00000614101 683 ntBASIC21.21■□□□□ 0.99
PIF1Q9H611 AC074183.2-201ENST00000623112 922 ntBASIC21.21■□□□□ 0.99
PIF1Q9H611 GAK-223ENST00000628912 497 ntTSL 5 BASIC21.21■□□□□ 0.99
PIF1Q9H611 NPHS2-201ENST00000367615 1855 ntAPPRIS P1 TSL 1 (best) BASIC21.21■□□□□ 0.99
PIF1Q9H611 TCP1-202ENST00000392168 1878 ntTSL 5 BASIC21.21■□□□□ 0.99
PIF1Q9H611 UBE3C-209ENST00000611269 1866 ntTSL 2 BASIC21.21■□□□□ 0.99
PIF1Q9H611 RASGRP2-210ENST00000394430 2174 ntTSL 2 BASIC21.21■□□□□ 0.99
PIF1Q9H611 ILDR2-205ENST00000526687 2299 ntTSL 5 BASIC21.21■□□□□ 0.99
PIF1Q9H611 TMEM151B-202ENST00000451188 4895 ntAPPRIS P2 TSL 5 BASIC21.21■□□□□ 0.99
PIF1Q9H611 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC21.2■□□□□ 0.99
PIF1Q9H611 SPHK1-201ENST00000323374 2138 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
PIF1Q9H611 ZSCAN1-202ENST00000391700 952 ntTSL 1 (best) BASIC21.2■□□□□ 0.98
PIF1Q9H611 AL121899.1-202ENST00000411839 536 ntTSL 5 BASIC21.2■□□□□ 0.98
PIF1Q9H611 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC21.2■□□□□ 0.98
PIF1Q9H611 AC004987.1-201ENST00000428627 508 ntBASIC21.2■□□□□ 0.98
PIF1Q9H611 SMKR1-201ENST00000462322 1035 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PIF1Q9H611 RAB4B-203ENST00000594800 1173 ntAPPRIS P1 TSL 5 BASIC21.2■□□□□ 0.98
PIF1Q9H611 TEAD1-206ENST00000527636 2544 ntAPPRIS ALT2 TSL 1 (best) BASIC21.2■□□□□ 0.98
PIF1Q9H611 ICAM5-201ENST00000221980 3000 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PIF1Q9H611 HNRNPUL2-201ENST00000301785 5106 ntAPPRIS P1 TSL 1 (best) BASIC21.2■□□□□ 0.98
PIF1Q9H611 RNF39-202ENST00000376751 1970 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
PIF1Q9H611 KCNIP1-201ENST00000328939 2014 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PIF1Q9H611 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC21.19■□□□□ 0.98
PIF1Q9H611 IRF3-228ENST00000601291 1556 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
PIF1Q9H611 BSN-AS2-201ENST00000421598 2603 ntTSL 2 BASIC21.19■□□□□ 0.98
PIF1Q9H611 SYT6-209ENST00000610222 1707 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
PIF1Q9H611 VGLL2-201ENST00000326274 2212 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PIF1Q9H611 DNM2-205ENST00000585892 2774 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
PIF1Q9H611 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PIF1Q9H611 MMP25-AS1-209ENST00000576250 779 ntTSL 5 BASIC21.19■□□□□ 0.98
PIF1Q9H611 HOMER3-207ENST00000594794 903 ntTSL 5 BASIC21.19■□□□□ 0.98
PIF1Q9H611 KLF16-204ENST00000617223 1133 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PIF1Q9H611 NAE1-202ENST00000359087 1825 ntTSL 2 BASIC21.19■□□□□ 0.98
PIF1Q9H611 AC109460.3-201ENST00000569969 5296 ntTSL 2 BASIC21.19■□□□□ 0.98
PIF1Q9H611 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC21.19■□□□□ 0.98
PIF1Q9H611 CREB1-205ENST00000430624 2005 ntAPPRIS P1 TSL 5 BASIC21.19■□□□□ 0.98
PIF1Q9H611 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC21.19■□□□□ 0.98
PIF1Q9H611 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC21.19■□□□□ 0.98
PIF1Q9H611 LHPP-201ENST00000368839 1522 ntTSL 1 (best) BASIC21.19■□□□□ 0.98
PIF1Q9H611 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC21.19■□□□□ 0.98
PIF1Q9H611 CACNG8-201ENST00000270458 8747 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
PIF1Q9H611 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC21.18■□□□□ 0.98
PIF1Q9H611 CTCF-202ENST00000401394 2978 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
PIF1Q9H611 ANKHD1-204ENST00000394722 2035 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
PIF1Q9H611 IER2-201ENST00000292433 2085 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PIF1Q9H611 TNFRSF12A-201ENST00000326577 1033 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PIF1Q9H611 AL354928.1-201ENST00000438380 617 ntTSL 2 BASIC21.18■□□□□ 0.98
PIF1Q9H611 GPRC5B-202ENST00000535671 1215 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
PIF1Q9H611 ERFE-207ENST00000546354 1065 ntAPPRIS P2 TSL 1 (best) BASIC21.18■□□□□ 0.98
PIF1Q9H611 KCTD5-202ENST00000564195 774 ntTSL 5 BASIC21.18■□□□□ 0.98
PIF1Q9H611 AC019171.1-201ENST00000601251 1056 ntBASIC21.18■□□□□ 0.98
PIF1Q9H611 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
PIF1Q9H611 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC21.18■□□□□ 0.98
PIF1Q9H611 MTERF3-201ENST00000287025 1409 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PIF1Q9H611 RAPH1-210ENST00000453034 2394 ntAPPRIS ALT2 TSL 1 (best) BASIC21.18■□□□□ 0.98
PIF1Q9H611 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC21.18■□□□□ 0.98
PIF1Q9H611 CRHR1-202ENST00000314537 2535 ntAPPRIS P1 TSL 1 (best) BASIC21.18■□□□□ 0.98
PIF1Q9H611 RHOT1-205ENST00000545287 2516 ntAPPRIS P4 TSL 5 BASIC21.18■□□□□ 0.98
PIF1Q9H611 FAIM-201ENST00000338446 1622 ntTSL 5 BASIC21.18■□□□□ 0.98
PIF1Q9H611 AC242852.2-201ENST00000615738 1807 ntBASIC21.18■□□□□ 0.98
PIF1Q9H611 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
PIF1Q9H611 KLF3-203ENST00000514033 1871 ntTSL 1 (best) BASIC21.18■□□□□ 0.98
PIF1Q9H611 PPT2-244ENST00000324816 2053 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
PIF1Q9H611 PITX1-201ENST00000265340 2406 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PIF1Q9H611 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
PIF1Q9H611 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC21.17■□□□□ 0.98
PIF1Q9H611 PFDN2-201ENST00000368010 677 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PIF1Q9H611 DUX4L18-201ENST00000553347 1267 ntBASIC21.17■□□□□ 0.98
PIF1Q9H611 EME2-205ENST00000568449 1234 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PIF1Q9H611 AC116025.2-201ENST00000576632 443 ntTSL 3 BASIC21.17■□□□□ 0.98
PIF1Q9H611 EVX1-201ENST00000222761 1500 ntTSL 1 (best) BASIC21.17■□□□□ 0.98
PIF1Q9H611 TSNARE1-208ENST00000524325 1963 ntAPPRIS P3 TSL 2 BASIC21.17■□□□□ 0.98
PIF1Q9H611 SUMF1-201ENST00000272902 2159 ntAPPRIS P1 TSL 1 (best) BASIC21.17■□□□□ 0.98
PIF1Q9H611 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC21.17■□□□□ 0.98
PIF1Q9H611 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC21.16■□□□□ 0.98
PIF1Q9H611 FAR2P4-203ENST00000560285 1739 ntTSL 2 BASIC21.16■□□□□ 0.98
PIF1Q9H611 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PIF1Q9H611 MPP5-205ENST00000556345 1163 ntTSL 2 BASIC21.16■□□□□ 0.98
PIF1Q9H611 BAALC-205ENST00000438105 2662 ntTSL 1 (best) BASIC21.16■□□□□ 0.98
PIF1Q9H611 IRX2-201ENST00000302057 2456 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PIF1Q9H611 SOAT2-201ENST00000301466 2044 ntAPPRIS P1 TSL 1 (best) BASIC21.16■□□□□ 0.98
PIF1Q9H611 STARD3NL-201ENST00000009041 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PIF1Q9H611 GRIK4-205ENST00000527524 5861 ntAPPRIS P1 TSL 2 BASIC21.15■□□□□ 0.98
PIF1Q9H611 SAMD13-205ENST00000370673 1567 ntTSL 2 BASIC21.15■□□□□ 0.98
PIF1Q9H611 GALR2-201ENST00000329003 1364 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PIF1Q9H611 PPP3CC-202ENST00000289963 2135 ntAPPRIS ALT1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PIF1Q9H611 AQP1-202ENST00000409611 1140 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
PIF1Q9H611 MTX2-204ENST00000443241 799 ntTSL 3 BASIC21.15■□□□□ 0.98
PIF1Q9H611 ZFP69B-204ENST00000484445 1976 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
PIF1Q9H611 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC21.15■□□□□ 0.98
PIF1Q9H611 AC137767.1-201ENST00000602918 1920 ntBASIC21.15■□□□□ 0.98
PIF1Q9H611 HABP4-201ENST00000375249 2615 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PIF1Q9H611 ZNF395-210ENST00000523095 1790 ntAPPRIS P1 TSL 1 (best) BASIC21.15■□□□□ 0.98
PIF1Q9H611 CCDC38-201ENST00000344280 2277 ntAPPRIS P2 TSL 1 (best) BASIC21.15■□□□□ 0.98
PIF1Q9H611 AL591684.2-201ENST00000605970 1594 ntTSL 5 BASIC21.14■□□□□ 0.98
PIF1Q9H611 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC21.14■□□□□ 0.98
Retrieved 100 of 98,524 protein–RNA pairs in 35.4 ms