Protein–RNA interactions for Protein: Q8TE12

LMX1A, LIM homeobox transcription factor 1-alpha, humanhuman

Predictions only

Length 382 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
LMX1AQ8TE12 ZNF205-201ENST00000219091 1947 ntAPPRIS P1 TSL 5 BASIC21.84■■□□□ 1.09
LMX1AQ8TE12 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC21.84■■□□□ 1.09
LMX1AQ8TE12 CDK9-201ENST00000373264 2463 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
LMX1AQ8TE12 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.84■■□□□ 1.09
LMX1AQ8TE12 SLC35A2-210ENST00000616181 1614 ntTSL 2 BASIC21.84■■□□□ 1.09
LMX1AQ8TE12 PON2-202ENST00000433091 1726 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
LMX1AQ8TE12 DISC1-220ENST00000602873 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC21.83■■□□□ 1.09
LMX1AQ8TE12 AMIGO1-201ENST00000369862 2229 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.09
LMX1AQ8TE12 PTH1R-202ENST00000418619 2070 ntAPPRIS P1 TSL 5 BASIC21.83■■□□□ 1.09
LMX1AQ8TE12 NDUFAF8-201ENST00000431388 615 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.09
LMX1AQ8TE12 AP003419.1-201ENST00000535922 470 ntTSL 3 BASIC21.83■■□□□ 1.09
LMX1AQ8TE12 TUNAR-203ENST00000554321 767 ntAPPRIS P1 TSL 4 BASIC21.83■■□□□ 1.09
LMX1AQ8TE12 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC21.83■■□□□ 1.09
LMX1AQ8TE12 MCRIP1-205ENST00000572645 1038 ntTSL 1 (best) BASIC21.83■■□□□ 1.09
LMX1AQ8TE12 SRR-201ENST00000344595 2728 ntAPPRIS P1 TSL 1 (best) BASIC21.83■■□□□ 1.08
LMX1AQ8TE12 GAS2L1-201ENST00000406549 1803 ntTSL 1 (best) BASIC21.83■■□□□ 1.08
LMX1AQ8TE12 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
LMX1AQ8TE12 IL17RE-203ENST00000421412 2158 ntAPPRIS ALT2 TSL 1 (best) BASIC21.82■■□□□ 1.08
LMX1AQ8TE12 C1QTNF4-201ENST00000302514 1664 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
LMX1AQ8TE12 KRTAP5-7-201ENST00000398536 1408 ntAPPRIS P1 BASIC21.82■■□□□ 1.08
LMX1AQ8TE12 PYCARD-201ENST00000247470 990 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
LMX1AQ8TE12 AURKAIP1-204ENST00000378853 875 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
LMX1AQ8TE12 PRDX4-202ENST00000379341 1005 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
LMX1AQ8TE12 NMRAL1-202ENST00000404295 1233 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
LMX1AQ8TE12 LINC01678-201ENST00000411694 863 ntTSL 5 BASIC21.82■■□□□ 1.08
LMX1AQ8TE12 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC21.82■■□□□ 1.08
LMX1AQ8TE12 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC21.82■■□□□ 1.08
LMX1AQ8TE12 HOXB7-201ENST00000239165 1371 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
LMX1AQ8TE12 STARD3NL-202ENST00000396013 1365 ntAPPRIS P1 TSL 5 BASIC21.82■■□□□ 1.08
LMX1AQ8TE12 METTL9-202ENST00000396014 1817 ntAPPRIS ALT1 TSL 1 (best) BASIC21.82■■□□□ 1.08
LMX1AQ8TE12 POMZP3-202ENST00000310842 1490 ntAPPRIS P1 TSL 1 (best) BASIC21.82■■□□□ 1.08
LMX1AQ8TE12 RARA-204ENST00000394089 2024 ntAPPRIS P1 TSL 2 BASIC21.82■■□□□ 1.08
LMX1AQ8TE12 PLD4-201ENST00000392593 6515 ntAPPRIS P3 TSL 1 (best) BASIC21.81■■□□□ 1.08
LMX1AQ8TE12 QKI-207ENST00000453779 5685 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
LMX1AQ8TE12 PXK-202ENST00000356151 2037 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
LMX1AQ8TE12 UBE2E2-203ENST00000425792 1248 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
LMX1AQ8TE12 YBX1P1-201ENST00000445822 960 ntBASIC21.81■■□□□ 1.08
LMX1AQ8TE12 OR2I1P-207ENST00000453522 948 ntBASIC21.81■■□□□ 1.08
LMX1AQ8TE12 MLF2-206ENST00000539187 1110 ntAPPRIS P1 TSL 1 (best) BASIC21.81■■□□□ 1.08
LMX1AQ8TE12 SMIM19-203ENST00000417410 1466 ntAPPRIS P1 TSL 2 BASIC21.81■■□□□ 1.08
LMX1AQ8TE12 ANKRD53-204ENST00000457410 1671 ntTSL 5 BASIC21.81■■□□□ 1.08
LMX1AQ8TE12 PGF-203ENST00000553716 1699 ntAPPRIS ALT2 TSL 1 (best) BASIC21.81■■□□□ 1.08
LMX1AQ8TE12 CCDC151-202ENST00000586836 1867 ntTSL 2 BASIC21.81■■□□□ 1.08
LMX1AQ8TE12 PTPA-202ENST00000347048 1989 ntTSL 1 (best) BASIC21.81■■□□□ 1.08
LMX1AQ8TE12 RNASEH2B-201ENST00000336617 1629 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
LMX1AQ8TE12 SLC25A5-AS1-202ENST00000445759 1616 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
LMX1AQ8TE12 AP000802.1-201ENST00000500537 1934 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
LMX1AQ8TE12 LINC01124-201ENST00000409786 2117 ntBASIC21.8■■□□□ 1.08
LMX1AQ8TE12 USF3-203ENST00000491165 2133 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
LMX1AQ8TE12 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC21.8■■□□□ 1.08
LMX1AQ8TE12 TRAF4-205ENST00000444415 1456 ntTSL 5 BASIC21.8■■□□□ 1.08
LMX1AQ8TE12 GDNF-203ENST00000381826 778 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
LMX1AQ8TE12 MIR572-201ENST00000384983 95 ntBASIC21.8■■□□□ 1.08
LMX1AQ8TE12 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC21.8■■□□□ 1.08
LMX1AQ8TE12 GDNF-204ENST00000427982 856 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
LMX1AQ8TE12 NEBL-AS1-202ENST00000439097 661 ntTSL 2 BASIC21.8■■□□□ 1.08
LMX1AQ8TE12 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
LMX1AQ8TE12 MIR6084-201ENST00000622012 110 ntBASIC21.8■■□□□ 1.08
LMX1AQ8TE12 AL358852.1-201ENST00000623174 1268 ntBASIC21.8■■□□□ 1.08
LMX1AQ8TE12 ZSWIM6-201ENST00000252744 5501 ntAPPRIS P1 TSL 5 BASIC21.8■■□□□ 1.08
LMX1AQ8TE12 DALRD3-206ENST00000441576 1706 ntTSL 1 (best) BASIC21.8■■□□□ 1.08
LMX1AQ8TE12 NKIRAS2-204ENST00000393880 1644 ntAPPRIS P1 TSL 2 BASIC21.8■■□□□ 1.08
LMX1AQ8TE12 SH3GL1-201ENST00000269886 2516 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
LMX1AQ8TE12 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC21.79■■□□□ 1.08
LMX1AQ8TE12 RTCA-202ENST00000370126 538 ntTSL 1 (best) BASIC21.79■■□□□ 1.08
LMX1AQ8TE12 ASPDH-202ENST00000389208 1040 ntAPPRIS P1 TSL 5 BASIC21.79■■□□□ 1.08
LMX1AQ8TE12 AC034268.1-201ENST00000441047 882 ntBASIC21.79■■□□□ 1.08
LMX1AQ8TE12 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC21.79■■□□□ 1.08
LMX1AQ8TE12 SLC9A3-203ENST00000514375 2504 ntAPPRIS ALT2 TSL 1 (best) BASIC21.79■■□□□ 1.08
LMX1AQ8TE12 TTC34-202ENST00000637179 1775 ntAPPRIS P2 TSL 5 BASIC21.79■■□□□ 1.08
LMX1AQ8TE12 AMZ2P1-201ENST00000397713 2259 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
LMX1AQ8TE12 HTATIP2-201ENST00000419348 1477 ntTSL 2 BASIC21.78■■□□□ 1.08
LMX1AQ8TE12 SHD-204ENST00000599689 1729 ntTSL 5 BASIC21.78■■□□□ 1.08
LMX1AQ8TE12 AC113189.4-201ENST00000575331 5553 ntTSL 1 (best) BASIC21.78■■□□□ 1.08
LMX1AQ8TE12 NIPSNAP2-205ENST00000446778 1882 ntTSL 2 BASIC21.78■■□□□ 1.08
LMX1AQ8TE12 RTL8C-201ENST00000257013 1181 ntAPPRIS P1 BASIC21.78■■□□□ 1.08
LMX1AQ8TE12 ATP6V0E2-204ENST00000464662 513 ntAPPRIS P1 TSL 2 BASIC21.78■■□□□ 1.08
LMX1AQ8TE12 CAPNS1-207ENST00000589146 578 ntTSL 3 BASIC21.78■■□□□ 1.08
LMX1AQ8TE12 GP1BB-201ENST00000366425 1553 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
LMX1AQ8TE12 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC21.78■■□□□ 1.08
LMX1AQ8TE12 C16orf72-201ENST00000327827 5953 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
LMX1AQ8TE12 MRPL14-201ENST00000372014 959 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
LMX1AQ8TE12 AC012414.1-201ENST00000556676 535 ntBASIC21.77■■□□□ 1.08
LMX1AQ8TE12 AL031602.1-201ENST00000633169 911 ntBASIC21.77■■□□□ 1.08
LMX1AQ8TE12 FOXA3-201ENST00000302177 1989 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
LMX1AQ8TE12 C2CD4B-201ENST00000380392 1579 ntAPPRIS P1 TSL 2 BASIC21.77■■□□□ 1.08
LMX1AQ8TE12 SIRT7-201ENST00000328666 1743 ntAPPRIS P1 TSL 1 (best) BASIC21.77■■□□□ 1.08
LMX1AQ8TE12 EXOG-203ENST00000422077 1317 ntTSL 2 BASIC21.77■■□□□ 1.07
LMX1AQ8TE12 PEX11G-203ENST00000593942 1345 ntTSL 5 BASIC21.77■■□□□ 1.07
LMX1AQ8TE12 ALDH16A1-203ENST00000540132 2174 ntTSL 2 BASIC21.77■■□□□ 1.07
LMX1AQ8TE12 KIAA1456-206ENST00000528753 2392 ntTSL 2 BASIC21.76■■□□□ 1.07
LMX1AQ8TE12 SPRED3-204ENST00000587013 1539 ntTSL 5 BASIC21.76■■□□□ 1.07
LMX1AQ8TE12 LINC00543-201ENST00000567234 1845 ntBASIC21.76■■□□□ 1.07
LMX1AQ8TE12 ACBD4-214ENST00000591859 1998 ntTSL 1 (best) BASIC21.76■■□□□ 1.07
LMX1AQ8TE12 KRT10-201ENST00000269576 2124 ntAPPRIS P1 TSL 1 (best) BASIC21.76■■□□□ 1.07
LMX1AQ8TE12 HES6-202ENST00000409002 1286 ntAPPRIS ALT2 TSL 1 (best) BASIC21.76■■□□□ 1.07
LMX1AQ8TE12 SPOCK2-203ENST00000412663 1284 ntTSL 5 BASIC21.76■■□□□ 1.07
LMX1AQ8TE12 STOML2-202ENST00000452248 1296 ntTSL 2 BASIC21.76■■□□□ 1.07
LMX1AQ8TE12 RAB6A-204ENST00000536566 1267 ntTSL 5 BASIC21.76■■□□□ 1.07
LMX1AQ8TE12 STOML2-205ENST00000619795 1293 ntTSL 3 BASIC21.76■■□□□ 1.07
Retrieved 100 of 98,524 protein–RNA pairs in 30.2 ms