Protein–RNA interactions for Protein: Q8NCR9

CLRN3, Clarin-3, humanhuman

Predictions only

Length 226 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN3Q8NCR9 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC17.82■□□□□ 0.44
CLRN3Q8NCR9 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC17.82■□□□□ 0.44
CLRN3Q8NCR9 AC097358.2-201ENST00000607541 1159 ntBASIC17.82■□□□□ 0.44
CLRN3Q8NCR9 FBXL15-202ENST00000369956 2344 ntAPPRIS ALT1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CLRN3Q8NCR9 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CLRN3Q8NCR9 PTX3-201ENST00000295927 1940 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CLRN3Q8NCR9 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CLRN3Q8NCR9 SUDS3-204ENST00000543473 4897 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CLRN3Q8NCR9 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC17.82■□□□□ 0.44
CLRN3Q8NCR9 COMT-203ENST00000403184 2217 ntTSL 2 BASIC17.82■□□□□ 0.44
CLRN3Q8NCR9 PLEKHO1-202ENST00000369126 1809 ntTSL 1 (best) BASIC17.82■□□□□ 0.44
CLRN3Q8NCR9 SPON2-222ENST00000617421 2156 ntAPPRIS P1 TSL 5 BASIC17.81■□□□□ 0.44
CLRN3Q8NCR9 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CLRN3Q8NCR9 GPSM1-204ENST00000429455 2057 ntTSL 3 BASIC17.81■□□□□ 0.44
CLRN3Q8NCR9 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CLRN3Q8NCR9 TXNL4A-208ENST00000588162 752 ntTSL 2 BASIC17.81■□□□□ 0.44
CLRN3Q8NCR9 BACE2-201ENST00000328735 2824 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CLRN3Q8NCR9 AC005229.4-201ENST00000610085 2198 ntBASIC17.81■□□□□ 0.44
CLRN3Q8NCR9 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC17.81■□□□□ 0.44
CLRN3Q8NCR9 TLX1-203ENST00000467928 1838 ntTSL 1 (best) BASIC17.81■□□□□ 0.44
CLRN3Q8NCR9 AQP10-201ENST00000324978 1791 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CLRN3Q8NCR9 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CLRN3Q8NCR9 BOP1-205ENST00000569669 2303 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CLRN3Q8NCR9 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CLRN3Q8NCR9 LONRF3-202ENST00000371628 2550 ntAPPRIS P1 TSL 1 (best) BASIC17.81■□□□□ 0.44
CLRN3Q8NCR9 HMCES-204ENST00000502878 1952 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CLRN3Q8NCR9 CASP9-210ENST00000546424 4463 ntAPPRIS ALT2 TSL 5 BASIC17.8■□□□□ 0.44
CLRN3Q8NCR9 PTGER3-204ENST00000356595 1943 ntAPPRIS P4 TSL 1 (best) BASIC17.8■□□□□ 0.44
CLRN3Q8NCR9 PTGER3-207ENST00000370931 1914 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CLRN3Q8NCR9 ANKRD16-203ENST00000380094 2738 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
CLRN3Q8NCR9 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC17.8■□□□□ 0.44
CLRN3Q8NCR9 USP48-201ENST00000308271 4595 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CLRN3Q8NCR9 FAM136A-201ENST00000037869 1810 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CLRN3Q8NCR9 AC092053.2-201ENST00000640557 1818 ntBASIC17.8■□□□□ 0.44
CLRN3Q8NCR9 FNDC10-201ENST00000422725 2085 ntAPPRIS P1 BASIC17.8■□□□□ 0.44
CLRN3Q8NCR9 DENR-202ENST00000455982 1052 ntTSL 5 BASIC17.8■□□□□ 0.44
CLRN3Q8NCR9 CCR10-201ENST00000332438 1773 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CLRN3Q8NCR9 MATK-204ENST00000585778 1994 ntAPPRIS ALT2 TSL 1 (best) BASIC17.8■□□□□ 0.44
CLRN3Q8NCR9 GATAD1-201ENST00000287957 3361 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CLRN3Q8NCR9 FAM19A5-202ENST00000358295 2638 ntAPPRIS P1 TSL 2 BASIC17.8■□□□□ 0.44
CLRN3Q8NCR9 AC254629.1-202ENST00000618276 2112 ntTSL 2 BASIC17.8■□□□□ 0.44
CLRN3Q8NCR9 LRCH4-201ENST00000310300 2552 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CLRN3Q8NCR9 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC17.8■□□□□ 0.44
CLRN3Q8NCR9 ATP6AP1-201ENST00000369762 2099 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CLRN3Q8NCR9 RAB5A-201ENST00000273047 2536 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CLRN3Q8NCR9 SLC35D2-203ENST00000375259 1361 ntTSL 1 (best) BASIC17.79■□□□□ 0.44
CLRN3Q8NCR9 AKT1S1-206ENST00000391834 1849 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
CLRN3Q8NCR9 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CLRN3Q8NCR9 ADORA2A-214ENST00000611543 2412 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
CLRN3Q8NCR9 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC17.79■□□□□ 0.44
CLRN3Q8NCR9 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CLRN3Q8NCR9 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CLRN3Q8NCR9 AC006486.1-201ENST00000594664 634 ntAPPRIS P1 TSL 3 BASIC17.79■□□□□ 0.44
CLRN3Q8NCR9 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC17.79■□□□□ 0.44
CLRN3Q8NCR9 MNX1-207ENST00000543409 1620 ntAPPRIS ALT2 TSL 1 (best) BASIC17.79■□□□□ 0.44
CLRN3Q8NCR9 CNN3-202ENST00000394202 1974 ntTSL 2 BASIC17.79■□□□□ 0.44
CLRN3Q8NCR9 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLRN3Q8NCR9 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC17.78■□□□□ 0.44
CLRN3Q8NCR9 EP300-201ENST00000263253 9587 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLRN3Q8NCR9 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC17.78■□□□□ 0.44
CLRN3Q8NCR9 AL109917.1-201ENST00000412228 906 ntTSL 2 BASIC17.78■□□□□ 0.44
CLRN3Q8NCR9 AC026471.1-201ENST00000564629 3026 ntBASIC17.78■□□□□ 0.44
CLRN3Q8NCR9 TRIM14-203ENST00000375098 1792 ntAPPRIS P1 TSL 2 BASIC17.78■□□□□ 0.44
CLRN3Q8NCR9 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC17.78■□□□□ 0.44
CLRN3Q8NCR9 MBD3-207ENST00000590550 2782 ntTSL 2 BASIC17.78■□□□□ 0.44
CLRN3Q8NCR9 CPEB1-218ENST00000620182 2422 ntTSL 2 BASIC17.78■□□□□ 0.44
CLRN3Q8NCR9 LAYN-201ENST00000375614 2066 ntAPPRIS P3 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLRN3Q8NCR9 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC17.78■□□□□ 0.44
CLRN3Q8NCR9 C15orf59-201ENST00000379822 1342 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CLRN3Q8NCR9 ZAR1-201ENST00000327939 1460 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.44
CLRN3Q8NCR9 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC17.77■□□□□ 0.44
CLRN3Q8NCR9 PEX7-203ENST00000541292 945 ntTSL 5 BASIC17.77■□□□□ 0.44
CLRN3Q8NCR9 AC068152.1-210ENST00000574741 836 ntTSL 3 BASIC17.77■□□□□ 0.44
CLRN3Q8NCR9 KMT5C-201ENST00000255613 2308 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CLRN3Q8NCR9 PITX2-201ENST00000306732 2320 ntAPPRIS P4 TSL 1 (best) BASIC17.77■□□□□ 0.43
CLRN3Q8NCR9 C18orf25-204ENST00000615553 2329 ntTSL 5 BASIC17.77■□□□□ 0.43
CLRN3Q8NCR9 MTCH2-201ENST00000302503 2587 ntAPPRIS P1 TSL 1 (best) BASIC17.77■□□□□ 0.43
CLRN3Q8NCR9 POLE2-202ENST00000539565 1792 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CLRN3Q8NCR9 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC17.76■□□□□ 0.43
CLRN3Q8NCR9 SLC19A1-212ENST00000567670 2029 ntAPPRIS ALT2 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLRN3Q8NCR9 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLRN3Q8NCR9 C16orf70-201ENST00000219139 2865 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLRN3Q8NCR9 FOLH1-203ENST00000343844 2258 ntTSL 2 BASIC17.76■□□□□ 0.43
CLRN3Q8NCR9 EFCAB1-202ENST00000433756 2286 ntTSL 2 BASIC17.76■□□□□ 0.43
CLRN3Q8NCR9 AC096541.1-201ENST00000445070 1807 ntTSL 2 BASIC17.76■□□□□ 0.43
CLRN3Q8NCR9 BSCL2-205ENST00000403550 1693 ntAPPRIS P3 TSL 5 BASIC17.76■□□□□ 0.43
CLRN3Q8NCR9 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC17.76■□□□□ 0.43
CLRN3Q8NCR9 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC17.76■□□□□ 0.43
CLRN3Q8NCR9 C12orf75-201ENST00000443585 1366 ntAPPRIS P1 TSL 2 BASIC17.76■□□□□ 0.43
CLRN3Q8NCR9 KCNA3-201ENST00000369769 2569 ntAPPRIS P1 BASIC17.76■□□□□ 0.43
CLRN3Q8NCR9 FAM83H-201ENST00000388913 5654 ntAPPRIS P1 TSL 5 BASIC17.76■□□□□ 0.43
CLRN3Q8NCR9 RAB1B-201ENST00000311481 2007 ntAPPRIS P1 TSL 1 (best) BASIC17.76■□□□□ 0.43
CLRN3Q8NCR9 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CLRN3Q8NCR9 NUTM2D-201ENST00000381697 3290 ntAPPRIS P5 TSL 1 (best) BASIC17.75■□□□□ 0.43
CLRN3Q8NCR9 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CLRN3Q8NCR9 USP21-203ENST00000368002 2342 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CLRN3Q8NCR9 ZBTB33-202ENST00000557385 2346 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CLRN3Q8NCR9 FLOT1-201ENST00000376389 1912 ntAPPRIS P1 TSL 1 (best) BASIC17.75■□□□□ 0.43
CLRN3Q8NCR9 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC17.75■□□□□ 0.43
CLRN3Q8NCR9 NMB-202ENST00000394588 1017 ntTSL 1 (best) BASIC17.75■□□□□ 0.43
Retrieved 100 of 98,524 protein–RNA pairs in 16.8 ms