Protein–RNA interactions for Protein: Q7Z494

NPHP3, Nephrocystin-3, humanhuman

Predictions only

Length 1,330 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3Q7Z494 FAM102B-202ENST00000405454 1585 ntAPPRIS ALT2 TSL 5 BASIC30.78■■■□□ 2.52
NPHP3Q7Z494 FUT11-201ENST00000372841 2056 ntAPPRIS P1 TSL 1 (best) BASIC30.78■■■□□ 2.52
NPHP3Q7Z494 EI24-204ENST00000527235 1625 ntTSL 5 BASIC30.77■■■□□ 2.52
NPHP3Q7Z494 TMEM51-205ENST00000434578 1861 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
NPHP3Q7Z494 SDHAP3-201ENST00000436493 736 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
NPHP3Q7Z494 CROCCP5-201ENST00000436658 830 ntBASIC30.77■■■□□ 2.52
NPHP3Q7Z494 AC006970.2-201ENST00000450065 779 ntBASIC30.77■■■□□ 2.52
NPHP3Q7Z494 LINC00969-219ENST00000453324 1439 ntTSL 1 (best) BASIC30.77■■■□□ 2.52
NPHP3Q7Z494 AC064853.3-201ENST00000641801 1658 ntAPPRIS P1 BASIC30.77■■■□□ 2.52
NPHP3Q7Z494 CBWD2-201ENST00000259199 1812 ntAPPRIS P3 TSL 1 (best) BASIC30.77■■■□□ 2.52
NPHP3Q7Z494 FRAT2-201ENST00000371019 2213 ntAPPRIS P1 BASIC30.77■■■□□ 2.52
NPHP3Q7Z494 SHD-204ENST00000599689 1729 ntTSL 5 BASIC30.77■■■□□ 2.52
NPHP3Q7Z494 ATP13A2-215ENST00000617114 1723 ntTSL 5 BASIC30.77■■■□□ 2.52
NPHP3Q7Z494 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC30.77■■■□□ 2.52
NPHP3Q7Z494 HIST1H2AM-201ENST00000359611 393 ntAPPRIS P1 BASIC30.76■■■□□ 2.52
NPHP3Q7Z494 MYD88-205ENST00000424893 1279 ntAPPRIS ALT2 TSL 1 (best) BASIC30.76■■■□□ 2.52
NPHP3Q7Z494 AL137779.2-201ENST00000554859 448 ntTSL 2 BASIC30.76■■■□□ 2.52
NPHP3Q7Z494 AL109923.1-201ENST00000618799 583 ntBASIC30.76■■■□□ 2.52
NPHP3Q7Z494 HMGA2-205ENST00000425208 1444 ntTSL 1 (best) BASIC30.76■■■□□ 2.52
NPHP3Q7Z494 VIPR2-203ENST00000402066 1926 ntAPPRIS ALT2 TSL 5 BASIC30.76■■■□□ 2.51
NPHP3Q7Z494 MYO10-205ENST00000507288 1677 ntTSL 1 (best) BASIC30.76■■■□□ 2.51
NPHP3Q7Z494 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
NPHP3Q7Z494 UTF1-201ENST00000304477 1157 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
NPHP3Q7Z494 MT1M-201ENST00000379818 829 ntAPPRIS P1 TSL 1 (best) BASIC30.75■■■□□ 2.51
NPHP3Q7Z494 SEPT4-215ENST00000580809 952 ntTSL 1 (best) BASIC30.75■■■□□ 2.51
NPHP3Q7Z494 THRA-204ENST00000546243 1909 ntAPPRIS P1 TSL 2 BASIC30.75■■■□□ 2.51
NPHP3Q7Z494 ACAD8-202ENST00000374752 1797 ntTSL 2 BASIC30.75■■■□□ 2.51
NPHP3Q7Z494 RBFOX1-206ENST00000535565 1599 ntTSL 2 BASIC30.75■■■□□ 2.51
NPHP3Q7Z494 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC30.74■■■□□ 2.51
NPHP3Q7Z494 AC092368.3-201ENST00000562549 1107 ntTSL 5 BASIC30.74■■■□□ 2.51
NPHP3Q7Z494 LINC02136-201ENST00000567469 530 ntTSL 4 BASIC30.74■■■□□ 2.51
NPHP3Q7Z494 GABARAPL2-205ENST00000568455 646 ntTSL 3 BASIC30.74■■■□□ 2.51
NPHP3Q7Z494 WWOX-218ENST00000627394 894 ntTSL 5 BASIC30.74■■■□□ 2.51
NPHP3Q7Z494 DCUN1D2-208ENST00000478244 2045 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
NPHP3Q7Z494 FAM220A-206ENST00000616824 2211 ntTSL 1 (best) BASIC30.74■■■□□ 2.51
NPHP3Q7Z494 PLSCR3-202ENST00000535512 2067 ntAPPRIS P1 TSL 1 (best) BASIC30.74■■■□□ 2.51
NPHP3Q7Z494 LY6E-202ENST00000429120 1173 ntAPPRIS P2 TSL 1 (best) BASIC30.73■■■□□ 2.51
NPHP3Q7Z494 TMEM191A-211ENST00000637163 1067 ntBASIC30.73■■■□□ 2.51
NPHP3Q7Z494 AP004607.4-201ENST00000530158 1459 ntBASIC30.73■■■□□ 2.51
NPHP3Q7Z494 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
NPHP3Q7Z494 GGTA1P-203ENST00000481799 1487 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
NPHP3Q7Z494 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC30.73■■■□□ 2.51
NPHP3Q7Z494 LINC01976-201ENST00000565120 434 ntTSL 2 BASIC30.73■■■□□ 2.51
NPHP3Q7Z494 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC30.73■■■□□ 2.51
NPHP3Q7Z494 VRK2-202ENST00000412104 1916 ntTSL 1 (best) BASIC30.72■■■□□ 2.51
NPHP3Q7Z494 HLA-L-211ENST00000482052 1765 ntBASIC30.72■■■□□ 2.51
NPHP3Q7Z494 ARSB-206ENST00000565165 1772 ntTSL 1 (best) BASIC30.72■■■□□ 2.51
NPHP3Q7Z494 COX20-201ENST00000366528 568 ntTSL 2 BASIC30.72■■■□□ 2.51
NPHP3Q7Z494 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC30.72■■■□□ 2.51
NPHP3Q7Z494 C19orf24-201ENST00000409293 983 ntAPPRIS P1 TSL 2 BASIC30.72■■■□□ 2.51
NPHP3Q7Z494 NCF1B-203ENST00000435988 1254 ntBASIC30.72■■■□□ 2.51
NPHP3Q7Z494 SCTR-201ENST00000019103 1865 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
NPHP3Q7Z494 MEIOB-203ENST00000412554 1884 ntAPPRIS P1 TSL 5 BASIC30.71■■■□□ 2.51
NPHP3Q7Z494 CAPZB-203ENST00000375142 1686 ntAPPRIS ALT1 TSL 5 BASIC30.71■■■□□ 2.51
NPHP3Q7Z494 FAAH-201ENST00000243167 2094 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
NPHP3Q7Z494 SLC19A1-202ENST00000380010 1884 ntAPPRIS ALT2 TSL 1 (best) BASIC30.71■■■□□ 2.51
NPHP3Q7Z494 SETD9-201ENST00000285947 1619 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
NPHP3Q7Z494 DCXR-201ENST00000306869 887 ntAPPRIS P1 TSL 1 (best) BASIC30.71■■■□□ 2.51
NPHP3Q7Z494 DUX4L4-201ENST00000566884 1269 ntBASIC30.71■■■□□ 2.51
NPHP3Q7Z494 CEBPA-AS1-201ENST00000592982 2198 ntBASIC30.7■■■□□ 2.51
NPHP3Q7Z494 AC004854.2-201ENST00000608450 1441 ntBASIC30.7■■■□□ 2.51
NPHP3Q7Z494 MESP2-201ENST00000341735 1552 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
NPHP3Q7Z494 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.51
NPHP3Q7Z494 ARIH2OS-201ENST00000408959 1598 ntAPPRIS P1 BASIC30.7■■■□□ 2.51
NPHP3Q7Z494 ZDHHC16-203ENST00000353979 1647 ntTSL 1 (best) BASIC30.7■■■□□ 2.5
NPHP3Q7Z494 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC30.7■■■□□ 2.5
NPHP3Q7Z494 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC30.7■■■□□ 2.5
NPHP3Q7Z494 UQCR11-202ENST00000589880 504 ntAPPRIS P1 TSL 3 BASIC30.7■■■□□ 2.5
NPHP3Q7Z494 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC30.7■■■□□ 2.5
NPHP3Q7Z494 ZNF174-202ENST00000344823 1557 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
NPHP3Q7Z494 RCOR3-202ENST00000367006 2525 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
NPHP3Q7Z494 WIPI2-202ENST00000382384 1948 ntTSL 1 (best) BASIC30.69■■■□□ 2.5
NPHP3Q7Z494 SDF4-202ENST00000360001 1956 ntAPPRIS ALT2 TSL 1 (best) BASIC30.69■■■□□ 2.5
NPHP3Q7Z494 C1QL2-201ENST00000272520 2043 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
NPHP3Q7Z494 SLC22A15-201ENST00000369502 1230 ntTSL 2 BASIC30.69■■■□□ 2.5
NPHP3Q7Z494 CADM4-201ENST00000222374 2178 ntAPPRIS P1 TSL 1 (best) BASIC30.69■■■□□ 2.5
NPHP3Q7Z494 KANSL2-215ENST00000553086 1830 ntTSL 5 BASIC30.68■■■□□ 2.5
NPHP3Q7Z494 PPCS-202ENST00000372560 793 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
NPHP3Q7Z494 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC30.68■■■□□ 2.5
NPHP3Q7Z494 FP325331.1-202ENST00000623531 1380 ntBASIC30.68■■■□□ 2.5
NPHP3Q7Z494 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC30.68■■■□□ 2.5
NPHP3Q7Z494 SDC3-202ENST00000339394 1580 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
NPHP3Q7Z494 MFSD5-201ENST00000329548 1760 ntAPPRIS P1 TSL 1 (best) BASIC30.68■■■□□ 2.5
NPHP3Q7Z494 XBP1-207ENST00000611155 1794 ntTSL 5 BASIC30.68■■■□□ 2.5
NPHP3Q7Z494 ARRB2-210ENST00000572457 1660 ntTSL 5 BASIC30.67■■■□□ 2.5
NPHP3Q7Z494 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC30.67■■■□□ 2.5
NPHP3Q7Z494 BCKDHB-203ENST00000369760 743 ntTSL 3 BASIC30.67■■■□□ 2.5
NPHP3Q7Z494 METTL26-203ENST00000397664 604 ntTSL 2 BASIC30.67■■■□□ 2.5
NPHP3Q7Z494 POLR2F-203ENST00000407936 582 ntTSL 3 BASIC30.67■■■□□ 2.5
NPHP3Q7Z494 POLR2F-207ENST00000460648 518 ntTSL 4 BASIC30.67■■■□□ 2.5
NPHP3Q7Z494 UTS2R-201ENST00000313135 1357 ntAPPRIS P1 BASIC30.66■■■□□ 2.5
NPHP3Q7Z494 ARL6IP4-204ENST00000392435 1339 ntAPPRIS ALT2 TSL 1 (best) BASIC30.66■■■□□ 2.5
NPHP3Q7Z494 FNDC3B-204ENST00000421757 946 ntTSL 1 (best) BASIC30.66■■■□□ 2.5
NPHP3Q7Z494 LTBP3-212ENST00000529189 1997 ntTSL 2 BASIC30.66■■■□□ 2.5
NPHP3Q7Z494 LAYN-209ENST00000533265 1703 ntTSL 5 BASIC30.65■■■□□ 2.5
NPHP3Q7Z494 HAR1A-201ENST00000433161 1882 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
NPHP3Q7Z494 BCAP31-207ENST00000458587 1810 ntTSL 1 (best) BASIC30.65■■■□□ 2.5
NPHP3Q7Z494 HRASLS-201ENST00000264735 1066 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
NPHP3Q7Z494 FITM1-201ENST00000267426 1194 ntAPPRIS P1 TSL 1 (best) BASIC30.65■■■□□ 2.5
NPHP3Q7Z494 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC30.65■■■□□ 2.5
Retrieved 100 of 98,524 protein–RNA pairs in 14 ms